Wall clock time and date at job start Tue Mar 31 2020 10:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46648 * 2 1 4 4 H 1.08995 * 109.46868 * 55.04515 * 3 2 1 5 5 C 1.50695 * 109.46912 * 175.04573 * 3 2 1 6 6 H 1.08004 * 120.00000 * 120.00304 * 5 3 2 7 7 C 1.37880 * 120.00272 * 299.99893 * 5 3 2 8 8 N 1.31512 * 119.99635 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47144 * 89.99950 * 9 7 5 11 11 H 1.48500 * 109.47125 * 210.00500 * 9 7 5 12 12 H 1.48508 * 109.46841 * 330.00086 * 9 7 5 13 13 N 1.46897 * 109.47175 * 295.04815 * 3 2 1 14 14 C 1.46901 * 111.00252 * 154.79914 * 13 3 2 15 15 H 1.08993 * 110.91669 * 41.13235 * 14 13 3 16 16 C 1.54908 * 110.99861 * 277.23541 * 14 13 3 17 17 N 1.47429 * 104.82942 * 204.91663 * 16 14 13 18 18 C 1.34775 * 125.64659 * 204.09280 * 17 16 14 19 19 O 1.21513 * 120.00361 * 359.72257 * 18 17 16 20 20 O 1.34643 * 120.00064 * 179.97438 * 18 17 16 21 21 C 1.45195 * 117.00313 * 179.72761 * 20 18 17 22 22 C 1.53003 * 109.47248 * 59.99441 * 21 20 18 23 23 C 1.52992 * 109.47215 * 179.97438 * 21 20 18 24 24 C 1.53004 * 109.47004 * 299.99757 * 21 20 18 25 25 C 1.47019 * 108.70422 * 24.35458 * 17 16 14 26 26 C 1.54334 * 107.26279 * 358.58776 * 25 17 16 27 27 H 1.09006 * 110.99920 * 219.60147 * 26 25 17 28 28 C 1.52995 * 110.51318 * 96.45486 * 26 25 17 29 29 H 1.09001 * 109.46997 * 295.89824 * 1 2 3 30 30 H 1.08990 * 109.47581 * 55.90124 * 1 2 3 31 31 H 1.09002 * 109.46708 * 175.90272 * 1 2 3 32 32 H 1.08998 * 109.46809 * 240.00205 * 2 1 3 33 33 H 1.08992 * 109.47141 * 119.99709 * 2 1 3 34 34 H 0.97003 * 120.00074 * 180.02562 * 8 7 5 35 35 H 1.00900 * 110.99697 * 278.75068 * 13 3 2 36 36 H 1.09002 * 110.37111 * 86.08129 * 16 14 13 37 37 H 1.08998 * 110.46608 * 323.79707 * 16 14 13 38 38 H 1.09004 * 109.46899 * 60.00877 * 22 21 20 39 39 H 1.08999 * 109.47154 * 180.02562 * 22 21 20 40 40 H 1.08995 * 109.47544 * 300.00481 * 22 21 20 41 41 H 1.09000 * 109.47421 * 59.99648 * 23 21 20 42 42 H 1.09008 * 109.46969 * 179.97438 * 23 21 20 43 43 H 1.09004 * 109.47518 * 299.99482 * 23 21 20 44 44 H 1.09005 * 109.46856 * 60.00059 * 24 21 20 45 45 H 1.08999 * 109.47145 * 180.02562 * 24 21 20 46 46 H 1.08998 * 109.47124 * 300.00356 * 24 21 20 47 47 H 1.09001 * 109.88423 * 118.13344 * 25 17 16 48 48 H 1.09007 * 109.88078 * 239.29796 * 25 17 16 49 49 H 1.09000 * 109.47178 * 306.49194 * 28 26 25 50 50 H 1.08997 * 109.47863 * 66.50012 * 28 26 25 51 51 H 1.09006 * 109.47215 * 186.49726 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9813 0.8422 5 6 3.5419 1.4444 0.1227 6 1 4.1466 1.8893 -0.6538 7 6 4.1442 0.8783 1.2262 8 7 3.4079 0.3362 2.1715 9 14 6.0060 0.8799 1.3780 10 1 6.4443 2.1127 2.0804 11 1 6.4407 -0.3114 2.1507 12 1 6.6131 0.8398 0.0232 13 7 1.6503 2.0997 -1.2547 14 6 1.5669 3.5562 -1.0824 15 1 2.3911 3.9235 -0.4711 16 6 0.2011 3.9662 -0.4774 17 7 -0.0019 5.3597 -0.9140 18 6 -0.7785 6.2713 -0.2957 19 8 -1.3892 5.9673 0.7100 20 8 -0.8818 7.5174 -0.7951 21 6 -1.7406 8.4449 -0.0807 22 6 -1.2270 8.6167 1.3503 23 6 -1.7311 9.7996 -0.7915 24 6 -3.1683 7.8957 -0.0475 25 6 0.7781 5.5883 -2.1390 26 6 1.5283 4.2773 -2.4556 27 1 2.5379 4.4814 -2.8125 28 6 0.7512 3.4489 -3.4806 29 1 -0.3633 0.4489 0.9245 30 1 -0.3634 0.5761 -0.8509 31 1 -0.3633 -1.0251 -0.0734 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 3.8315 -0.0618 2.9481 35 1 2.2856 1.8597 -2.0010 36 1 0.2361 3.9109 0.6107 37 1 -0.5938 3.3282 -0.8635 38 1 -0.2099 9.0080 1.3267 39 1 -1.8720 9.3126 1.8867 40 1 -1.2334 7.6517 1.8570 41 1 -2.0968 9.6775 -1.8111 42 1 -2.3763 10.4957 -0.2554 43 1 -0.7140 10.1907 -0.8147 44 1 -3.1747 6.9306 0.4592 45 1 -3.8132 8.5922 0.4884 46 1 -3.5342 7.7732 -1.0669 47 1 0.1100 5.8434 -2.9617 48 1 1.4947 6.3937 -1.9773 49 1 -0.2708 3.3035 -3.1305 50 1 0.7368 3.9733 -4.4360 51 1 1.2338 2.4795 -3.6055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:16 Heat of formation + Delta-G solvation = -104.572334 kcal Electronic energy + Delta-G solvation = -27946.913369 eV Core-core repulsion = 24266.324846 eV Total energy + Delta-G solvation = -3680.588523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91028 -40.23740 -37.99365 -37.17929 -35.19502 -34.28617 -33.40789 -32.10250 -29.58341 -28.36985 -28.28288 -27.81433 -27.44071 -25.01911 -23.94344 -22.44496 -21.33995 -20.65021 -20.33104 -19.04040 -18.51008 -17.68475 -17.54076 -16.82251 -16.46739 -16.19823 -15.52527 -15.42655 -15.37100 -14.95727 -14.73360 -14.47480 -14.26461 -13.98111 -13.72971 -13.55416 -13.34225 -13.21112 -13.11562 -13.02155 -12.96717 -12.86716 -12.85597 -12.78690 -12.55205 -12.46394 -12.31853 -12.15049 -11.95228 -11.74118 -11.58930 -11.44281 -11.39508 -11.19313 -11.10757 -10.94741 -10.43881 -9.79417 -9.10036 -8.04269 -6.26061 1.03149 1.38584 1.40783 1.49220 1.71820 2.40891 2.87813 3.16747 3.50043 3.63970 3.68174 3.76882 3.80347 3.95352 4.12984 4.28887 4.47397 4.49292 4.57162 4.61187 4.63861 4.67974 4.71133 4.76121 4.80058 4.81480 4.83985 4.88705 4.93206 4.96054 5.04810 5.06799 5.14589 5.18087 5.26452 5.28474 5.32123 5.36218 5.45226 5.45954 5.55504 5.61762 5.66065 5.81152 6.13179 6.21825 6.37869 6.42672 6.82977 7.04241 7.23684 7.45798 8.92601 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003426 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.433295 B = 8170.853116 C = 8453.956875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.006 1.006 5 C -0.556 4.556 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.657 5.657 14 C 0.087 3.913 15 H 0.032 0.968 16 C 0.148 3.852 17 N -0.603 5.603 18 C 0.661 3.339 19 O -0.598 6.598 20 O -0.361 6.361 21 C 0.122 3.878 22 C -0.182 4.182 23 C -0.132 4.132 24 C -0.179 4.179 25 C 0.114 3.886 26 C -0.093 4.093 27 H 0.104 0.896 28 C -0.125 4.125 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.260 0.740 35 H 0.342 0.658 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.074 0.926 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 16.176 -11.071 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.139 4.139 3 C 0.115 3.885 4 H 0.012 0.988 5 C -0.596 4.596 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.288 5.288 14 C -0.025 4.025 15 H 0.050 0.950 16 C 0.026 3.974 17 N -0.344 5.344 18 C 0.416 3.584 19 O -0.490 6.490 20 O -0.275 6.275 21 C 0.085 3.915 22 C -0.239 4.239 23 C -0.188 4.188 24 C -0.236 4.236 25 C -0.008 4.008 26 C -0.112 4.112 27 H 0.122 0.878 28 C -0.182 4.182 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.093 0.907 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.680 16.027 -10.464 21.450 hybrid contribution 2.002 -0.214 1.167 2.328 sum -7.678 15.813 -9.297 19.886 Atomic orbital electron populations 1.21584 0.96702 0.99872 1.00232 1.21334 0.94088 0.98363 1.00156 1.18910 0.91518 0.91498 0.86610 0.98788 1.22197 0.94025 1.37763 1.05581 0.92587 1.25675 1.01939 0.94924 0.95642 1.70023 1.36384 1.38901 1.09809 0.85705 0.81303 0.77201 0.78291 1.20899 1.21171 1.18923 1.60714 1.55036 1.04747 1.08302 1.22342 0.93689 0.90111 0.96327 0.94970 1.21989 0.98390 0.78936 0.98093 1.47179 1.47394 1.10904 1.28902 1.17656 0.78944 0.80672 0.81097 1.90892 1.50041 1.80747 1.27306 1.86310 1.66027 1.19669 1.55536 1.22481 0.88700 0.88213 0.92068 1.22488 1.02117 1.03387 0.95878 1.21863 1.04047 0.91525 1.01406 1.22463 0.95068 1.02973 1.03083 1.22275 0.94620 0.98217 0.85724 1.22359 1.00846 0.93546 0.94470 0.87791 1.21594 0.99466 0.99923 0.97201 0.95851 0.91900 0.93697 0.94723 0.92451 0.93076 0.83933 0.94208 0.90589 0.92148 0.88692 0.92795 0.90848 0.87749 0.91247 0.92642 0.88797 0.91631 0.89151 0.90582 0.93566 0.90744 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.85 71.98 0.71 -4.38 16 2 C -0.10 -4.72 5.45 30.60 0.17 -4.55 16 3 C 0.22 10.72 1.86 44.17 0.08 10.80 16 4 H -0.01 -0.33 7.56 -2.39 -0.02 -0.35 16 5 C -0.56 -29.11 8.31 25.60 0.21 -28.89 16 6 H 0.06 2.84 7.74 -2.91 -0.02 2.81 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 13 N -0.66 -24.71 4.57 -466.24 -2.13 -26.84 16 14 C 0.09 3.01 2.91 46.30 0.13 3.15 16 15 H 0.03 1.32 7.82 -2.39 -0.02 1.30 16 16 C 0.15 5.37 5.94 86.85 0.52 5.89 16 17 N -0.60 -19.22 3.33 -942.06 -3.13 -22.36 16 18 C 0.66 22.36 7.93 129.79 1.03 23.39 16 19 O -0.60 -23.66 12.14 19.80 0.24 -23.42 16 20 O -0.36 -10.02 9.49 -55.52 -0.53 -10.54 16 21 C 0.12 2.67 1.13 -10.79 -0.01 2.66 16 22 C -0.18 -4.18 8.37 71.98 0.60 -3.58 16 23 C -0.13 -1.80 8.85 71.98 0.64 -1.17 16 24 C -0.18 -3.84 8.37 71.98 0.60 -3.24 16 25 C 0.11 2.73 6.47 86.73 0.56 3.29 16 26 C -0.09 -2.28 3.43 -9.61 -0.03 -2.31 16 27 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 28 C -0.12 -2.68 8.57 71.98 0.62 -2.06 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 2.35 7.64 -2.39 -0.02 2.33 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 3.09 5.95 -2.39 -0.01 3.08 16 34 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.34 12.19 7.27 -89.69 -0.65 11.54 16 36 H 0.04 1.71 7.98 -2.39 -0.02 1.69 16 37 H 0.08 2.75 7.81 -2.39 -0.02 2.73 16 38 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.65 5.88 -2.39 -0.01 1.64 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.05 1.60 5.88 -2.38 -0.01 1.59 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.09 1.82 7.84 -2.39 -0.02 1.80 16 48 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 49 H 0.05 1.11 7.58 -2.39 -0.02 1.09 16 50 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.06 1.48 6.81 -2.38 -0.02 1.47 16 Total: -1.00 -64.22 392.31 3.23 -60.99 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.23 Total: 28.85 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.27 Total: 0.43 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -5.02 Total: -101.27 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.29 Total: -33.96 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -64.22 3.23 -60.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.580 kcal (2) G-P(sol) polarization free energy of solvation -64.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds