Wall clock time and date at job start Tue Mar 31 2020 10:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.08996 * 109.47434 * 305.65205 * 3 2 1 5 5 C 1.50694 * 109.47063 * 185.64927 * 3 2 1 6 6 H 1.08002 * 119.99890 * 240.00075 * 5 3 2 7 7 C 1.37877 * 120.00406 * 60.00471 * 5 3 2 8 8 N 1.31521 * 119.99407 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00599 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47295 * 119.99820 * 9 7 5 12 12 H 1.48503 * 109.47290 * 240.00018 * 9 7 5 13 13 N 1.46902 * 109.46999 * 65.64910 * 3 2 1 14 14 C 1.46898 * 111.00359 * 205.83366 * 13 3 2 15 15 H 1.09004 * 110.88262 * 322.03689 * 14 13 3 16 16 C 1.54908 * 111.00196 * 85.91165 * 14 13 3 17 17 N 1.47428 * 104.83190 * 155.08764 * 16 14 13 18 18 C 1.34772 * 125.64964 * 155.91073 * 17 16 14 19 19 O 1.21507 * 119.99930 * 359.97438 * 18 17 16 20 20 O 1.34642 * 119.99696 * 180.02562 * 18 17 16 21 21 C 1.45201 * 116.99706 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47512 * 59.99563 * 21 20 18 23 23 C 1.52996 * 109.47073 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.46990 * 299.99846 * 21 20 18 25 25 C 1.47031 * 108.70042 * 335.87022 * 17 16 14 26 26 C 1.54322 * 107.26905 * 1.06217 * 25 17 16 27 27 H 1.09004 * 110.72254 * 263.82386 * 26 25 17 28 28 C 1.53001 * 110.71836 * 140.55547 * 26 25 17 29 29 H 1.08994 * 109.47400 * 174.44577 * 1 2 3 30 30 H 1.09002 * 109.47086 * 54.44515 * 1 2 3 31 31 H 1.09005 * 109.46778 * 294.44610 * 1 2 3 32 32 H 1.09000 * 109.47056 * 120.00366 * 2 1 3 33 33 H 1.09002 * 109.46607 * 240.00328 * 2 1 3 34 34 H 0.97000 * 119.99752 * 180.02562 * 8 7 5 35 35 H 1.00906 * 110.99954 * 329.79499 * 13 3 2 36 36 H 1.08995 * 110.36746 * 273.92454 * 16 14 13 37 37 H 1.09003 * 110.36878 * 36.25083 * 16 14 13 38 38 H 1.09006 * 109.46712 * 59.99876 * 22 21 20 39 39 H 1.08993 * 109.47704 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47270 * 300.00686 * 22 21 20 41 41 H 1.09001 * 109.47379 * 59.99664 * 23 21 20 42 42 H 1.08999 * 109.47286 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.46680 * 299.99414 * 23 21 20 44 44 H 1.08993 * 109.47271 * 60.00035 * 24 21 20 45 45 H 1.09003 * 109.47106 * 180.02562 * 24 21 20 46 46 H 1.09001 * 109.46987 * 300.00045 * 24 21 20 47 47 H 1.08994 * 109.87666 * 120.47538 * 25 17 16 48 48 H 1.08999 * 109.88340 * 241.48946 * 25 17 16 49 49 H 1.09001 * 109.47419 * 306.47676 * 28 26 25 50 50 H 1.09000 * 109.47053 * 66.47339 * 28 26 25 51 51 H 1.09001 * 109.46980 * 186.47061 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1399 6 1 4.1541 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3449 -2.1916 9 14 5.9900 0.8851 -1.4256 10 1 6.5965 1.5457 -0.2419 11 1 6.4802 -0.5137 -1.5177 12 1 6.3720 1.6255 -2.6549 13 7 1.6649 2.0944 1.2618 14 6 1.5650 3.5503 1.0928 15 1 2.3429 3.9180 0.4235 16 6 0.1586 3.9551 0.5851 17 7 -0.0171 5.3490 1.0320 18 6 -0.8383 6.2569 0.4683 19 8 -1.5136 5.9504 -0.4943 20 8 -0.9096 7.5038 0.9712 21 6 -1.8147 8.4291 0.3132 22 6 -3.2409 7.8786 0.3753 23 6 -1.7597 9.7853 1.0194 24 6 -1.3967 8.5987 -1.1488 25 6 0.8511 5.5842 2.1950 26 6 1.6217 4.2745 2.4638 27 1 1.1230 3.6843 3.2326 28 6 3.0696 4.5700 2.8604 29 1 -0.3634 -1.0228 -0.0995 30 1 -0.3633 0.5976 -0.8361 31 1 -0.3633 0.4253 0.9356 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7976 -0.0506 -2.9742 35 1 0.8041 1.7125 1.6242 36 1 0.1168 3.8973 -0.5025 37 1 -0.6038 3.3153 1.0295 38 1 -3.5386 7.7578 1.4169 39 1 -3.9203 8.5730 -0.1190 40 1 -3.2797 6.9125 -0.1280 41 1 -0.7436 10.1773 0.9748 42 1 -2.4395 10.4798 0.5258 43 1 -2.0573 9.6648 2.0611 44 1 -1.4355 7.6328 -1.6521 45 1 -2.0759 9.2937 -1.6426 46 1 -0.3807 8.9909 -1.1930 47 1 1.5528 6.3891 1.9768 48 1 0.2455 5.8455 3.0628 49 1 3.5300 5.2080 2.1060 50 1 3.0856 5.0780 3.8247 51 1 3.6245 3.6347 2.9332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:20 Heat of formation + Delta-G solvation = -88.892813 kcal Electronic energy + Delta-G solvation = -27859.631677 eV Core-core repulsion = 24179.723069 eV Total energy + Delta-G solvation = -3679.908608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73920 -38.95726 -36.73605 -35.67085 -34.11879 -32.71122 -31.99609 -30.82866 -27.97015 -27.55925 -27.47909 -26.22692 -26.06849 -23.30638 -22.36648 -21.17346 -20.11485 -19.56651 -19.21344 -17.72693 -16.67682 -16.39168 -16.16977 -15.52274 -14.90954 -14.73901 -14.50150 -14.36061 -13.78656 -13.62244 -13.42845 -13.12258 -12.92764 -12.74115 -12.64573 -12.37882 -12.29888 -12.08438 -12.00400 -11.92123 -11.88324 -11.67465 -11.43083 -11.35708 -11.21465 -10.95586 -10.86535 -10.69089 -10.60541 -10.42222 -10.36721 -9.98426 -9.93774 -9.70539 -9.54656 -9.13157 -8.58516 -8.36702 -7.34506 -5.98367 -4.02693 2.16783 2.95476 3.30649 3.39101 3.43189 3.94036 4.43224 4.59666 4.63355 4.73178 4.77920 4.88665 5.04681 5.28931 5.30455 5.37449 5.39190 5.44783 5.53539 5.54499 5.61680 5.62937 5.70338 5.74075 5.80561 5.82611 5.98097 6.06567 6.13790 6.15404 6.16496 6.19205 6.26027 6.30001 6.34544 6.41340 6.50374 6.57351 6.69767 6.82498 7.05101 7.13148 7.45045 7.62761 7.74815 7.89061 8.20986 8.35168 8.44819 8.67004 9.05174 9.62465 11.07031 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003374 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.727113 B = 8295.627658 C = 8469.218783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.217 3.783 4 H 0.005 0.995 5 C -0.493 4.493 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.666 5.666 14 C 0.094 3.906 15 H 0.101 0.899 16 C 0.095 3.905 17 N -0.598 5.598 18 C 0.664 3.336 19 O -0.570 6.570 20 O -0.363 6.363 21 C 0.135 3.865 22 C -0.183 4.183 23 C -0.139 4.139 24 C -0.184 4.184 25 C 0.109 3.891 26 C -0.095 4.095 27 H 0.084 0.916 28 C -0.132 4.132 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.259 0.741 35 H 0.320 0.680 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.047 0.953 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 14.453 8.247 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.110 3.890 4 H 0.023 0.977 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.296 5.296 14 C -0.018 4.018 15 H 0.119 0.881 16 C -0.029 4.029 17 N -0.339 5.339 18 C 0.419 3.581 19 O -0.460 6.460 20 O -0.278 6.278 21 C 0.098 3.902 22 C -0.240 4.240 23 C -0.196 4.196 24 C -0.241 4.241 25 C -0.014 4.014 26 C -0.114 4.114 27 H 0.103 0.897 28 C -0.190 4.190 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.814 14.396 7.963 18.664 hybrid contribution -0.007 0.068 -0.774 0.777 sum -8.821 14.464 7.189 18.404 Atomic orbital electron populations 1.21896 0.99560 0.99852 0.99538 1.21780 0.91223 1.00294 1.03184 1.19226 0.95656 0.90032 0.84073 0.97698 1.21225 0.91117 1.36605 1.04262 0.91882 1.24960 0.98053 0.95645 0.95884 1.69883 1.34593 1.39391 1.09556 0.86512 0.85852 0.77586 0.77863 1.19754 1.21178 1.21297 1.60796 1.36122 1.00182 1.32501 1.22806 0.93521 0.90708 0.94806 0.88129 1.23302 0.99517 0.78705 1.01366 1.47130 1.42474 1.11372 1.32905 1.17554 0.79588 0.79978 0.80959 1.90892 1.46627 1.80000 1.28466 1.86305 1.62768 1.20643 1.58067 1.22028 0.88240 0.87324 0.92605 1.22510 0.94701 1.04074 1.02709 1.21841 1.03160 0.93533 1.01086 1.22520 1.01670 1.04738 0.95181 1.22204 0.92754 0.98897 0.87544 1.22236 0.96597 0.93977 0.98615 0.89748 1.21641 0.94781 1.02527 1.00053 0.94337 0.93786 0.94693 0.93986 0.88168 0.93117 0.86137 0.90172 0.91739 0.92315 0.91303 0.89322 0.91495 0.90289 0.91587 0.89260 0.91314 0.92177 0.91293 0.91727 0.92826 0.93385 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.65 37.16 0.36 -2.47 16 2 C -0.13 -2.85 5.35 -26.73 -0.14 -2.99 16 3 C 0.22 5.07 1.91 -68.87 -0.13 4.94 16 4 H 0.01 0.14 7.73 -51.93 -0.40 -0.26 16 5 C -0.49 -12.95 8.58 -34.44 -0.30 -13.25 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.89 -24.93 11.29 55.43 0.63 -24.30 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.67 -12.78 6.17 -98.72 -0.61 -13.39 16 14 C 0.09 1.62 2.55 -65.57 -0.17 1.45 16 15 H 0.10 2.00 7.71 -51.93 -0.40 1.60 16 16 C 0.09 1.59 6.36 -2.53 -0.02 1.57 16 17 N -0.60 -9.40 3.33 -176.30 -0.59 -9.99 16 18 C 0.66 10.97 7.93 54.05 0.43 11.39 16 19 O -0.57 -10.59 12.14 -19.28 -0.23 -10.82 16 20 O -0.36 -5.17 9.49 -40.33 -0.38 -5.56 16 21 C 0.13 1.56 1.13 -90.62 -0.10 1.46 16 22 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 23 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 24 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 25 C 0.11 1.43 6.49 -3.06 -0.02 1.41 16 26 C -0.09 -1.30 3.24 -88.79 -0.29 -1.59 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 C -0.13 -1.74 9.16 37.16 0.34 -1.40 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.32 5.65 6.17 -39.29 -0.24 5.40 16 36 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 37 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.87 7.76 -51.93 -0.40 0.47 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -28.67 394.23 -8.86 -37.53 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -9.42 Total: 7.03 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 0.82 Total: -2.47 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.57 Total: -47.68 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.62 Total: -16.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.67 -8.86 -37.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.359 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds