Wall clock time and date at job start Tue Mar 31 2020 10:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47364 * 2 1 4 4 H 1.08996 * 109.47434 * 305.65205 * 3 2 1 5 5 C 1.50694 * 109.47063 * 185.64927 * 3 2 1 6 6 H 1.08002 * 119.99890 * 240.00075 * 5 3 2 7 7 C 1.37877 * 120.00406 * 60.00471 * 5 3 2 8 8 N 1.31521 * 119.99407 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00599 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47295 * 119.99820 * 9 7 5 12 12 H 1.48503 * 109.47290 * 240.00018 * 9 7 5 13 13 N 1.46902 * 109.46999 * 65.64910 * 3 2 1 14 14 C 1.46898 * 111.00359 * 205.83366 * 13 3 2 15 15 H 1.09004 * 110.88262 * 322.03689 * 14 13 3 16 16 C 1.54908 * 111.00196 * 85.91165 * 14 13 3 17 17 N 1.47428 * 104.83190 * 155.08764 * 16 14 13 18 18 C 1.34772 * 125.64964 * 155.91073 * 17 16 14 19 19 O 1.21507 * 119.99930 * 359.97438 * 18 17 16 20 20 O 1.34642 * 119.99696 * 180.02562 * 18 17 16 21 21 C 1.45201 * 116.99706 * 179.97438 * 20 18 17 22 22 C 1.52999 * 109.47512 * 59.99563 * 21 20 18 23 23 C 1.52996 * 109.47073 * 180.02562 * 21 20 18 24 24 C 1.53003 * 109.46990 * 299.99846 * 21 20 18 25 25 C 1.47031 * 108.70042 * 335.87022 * 17 16 14 26 26 C 1.54322 * 107.26905 * 1.06217 * 25 17 16 27 27 H 1.09004 * 110.72254 * 263.82386 * 26 25 17 28 28 C 1.53001 * 110.71836 * 140.55547 * 26 25 17 29 29 H 1.08994 * 109.47400 * 174.44577 * 1 2 3 30 30 H 1.09002 * 109.47086 * 54.44515 * 1 2 3 31 31 H 1.09005 * 109.46778 * 294.44610 * 1 2 3 32 32 H 1.09000 * 109.47056 * 120.00366 * 2 1 3 33 33 H 1.09002 * 109.46607 * 240.00328 * 2 1 3 34 34 H 0.97000 * 119.99752 * 180.02562 * 8 7 5 35 35 H 1.00906 * 110.99954 * 329.79499 * 13 3 2 36 36 H 1.08995 * 110.36746 * 273.92454 * 16 14 13 37 37 H 1.09003 * 110.36878 * 36.25083 * 16 14 13 38 38 H 1.09006 * 109.46712 * 59.99876 * 22 21 20 39 39 H 1.08993 * 109.47704 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.47270 * 300.00686 * 22 21 20 41 41 H 1.09001 * 109.47379 * 59.99664 * 23 21 20 42 42 H 1.08999 * 109.47286 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.46680 * 299.99414 * 23 21 20 44 44 H 1.08993 * 109.47271 * 60.00035 * 24 21 20 45 45 H 1.09003 * 109.47106 * 180.02562 * 24 21 20 46 46 H 1.09001 * 109.46987 * 300.00045 * 24 21 20 47 47 H 1.08994 * 109.87666 * 120.47538 * 25 17 16 48 48 H 1.08999 * 109.88340 * 241.48946 * 25 17 16 49 49 H 1.09001 * 109.47419 * 306.47676 * 28 26 25 50 50 H 1.09000 * 109.47053 * 66.47339 * 28 26 25 51 51 H 1.09001 * 109.46980 * 186.47061 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1399 6 1 4.1541 1.8863 0.6315 7 6 4.1301 0.8830 -1.2525 8 7 3.3829 0.3449 -2.1916 9 14 5.9900 0.8851 -1.4256 10 1 6.5965 1.5457 -0.2419 11 1 6.4802 -0.5137 -1.5177 12 1 6.3720 1.6255 -2.6549 13 7 1.6649 2.0944 1.2618 14 6 1.5650 3.5503 1.0928 15 1 2.3429 3.9180 0.4235 16 6 0.1586 3.9551 0.5851 17 7 -0.0171 5.3490 1.0320 18 6 -0.8383 6.2569 0.4683 19 8 -1.5136 5.9504 -0.4943 20 8 -0.9096 7.5038 0.9712 21 6 -1.8147 8.4291 0.3132 22 6 -3.2409 7.8786 0.3753 23 6 -1.7597 9.7853 1.0194 24 6 -1.3967 8.5987 -1.1488 25 6 0.8511 5.5842 2.1950 26 6 1.6217 4.2745 2.4638 27 1 1.1230 3.6843 3.2326 28 6 3.0696 4.5700 2.8604 29 1 -0.3634 -1.0228 -0.0995 30 1 -0.3633 0.5976 -0.8361 31 1 -0.3633 0.4253 0.9356 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.7976 -0.0506 -2.9742 35 1 0.8041 1.7125 1.6242 36 1 0.1168 3.8973 -0.5025 37 1 -0.6038 3.3153 1.0295 38 1 -3.5386 7.7578 1.4169 39 1 -3.9203 8.5730 -0.1190 40 1 -3.2797 6.9125 -0.1280 41 1 -0.7436 10.1773 0.9748 42 1 -2.4395 10.4798 0.5258 43 1 -2.0573 9.6648 2.0611 44 1 -1.4355 7.6328 -1.6521 45 1 -2.0759 9.2937 -1.6426 46 1 -0.3807 8.9909 -1.1930 47 1 1.5528 6.3891 1.9768 48 1 0.2455 5.8455 3.0628 49 1 3.5300 5.2080 2.1060 50 1 3.0856 5.0780 3.8247 51 1 3.6245 3.6347 2.9332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152256.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:19 Heat of formation + Delta-G solvation = -105.900720 kcal Electronic energy + Delta-G solvation = -27860.369195 eV Core-core repulsion = 24179.723069 eV Total energy + Delta-G solvation = -3680.646126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.92742 -40.22211 -38.03947 -37.25533 -35.19688 -34.27543 -33.57749 -32.35475 -29.54072 -28.38254 -28.29668 -27.87136 -27.34272 -24.95186 -23.80880 -22.33691 -21.64113 -21.09813 -20.38384 -18.94327 -18.27237 -17.85701 -17.48802 -16.90543 -16.43708 -16.11497 -15.91074 -15.45075 -15.23506 -14.88093 -14.67769 -14.48485 -14.28071 -14.15187 -13.83565 -13.52219 -13.39993 -13.33072 -13.13031 -13.05529 -12.94420 -12.88848 -12.85964 -12.78360 -12.49979 -12.46865 -12.36720 -12.08586 -12.01132 -11.95538 -11.71436 -11.51698 -11.41200 -11.16766 -11.11334 -11.01535 -10.41598 -9.84940 -9.03055 -8.04526 -6.15677 1.00470 1.41259 1.44052 1.54956 1.68724 2.45544 2.84341 3.21556 3.44429 3.60677 3.74104 3.75197 3.79219 3.94186 4.09000 4.18871 4.32102 4.46504 4.51408 4.52916 4.57981 4.60036 4.66002 4.70892 4.72284 4.75038 4.79712 4.82581 4.87369 4.87725 4.97027 5.03106 5.11503 5.14612 5.19197 5.25579 5.27049 5.33468 5.36061 5.38344 5.43820 5.55028 5.64394 5.78292 5.92330 6.37143 6.39100 6.48866 6.95781 6.99225 7.20547 7.53181 8.98963 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003374 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.727113 B = 8295.627658 C = 8469.218783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.226 3.774 4 H -0.032 1.032 5 C -0.505 4.505 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.659 5.659 14 C 0.094 3.906 15 H 0.067 0.933 16 C 0.104 3.896 17 N -0.602 5.602 18 C 0.660 3.340 19 O -0.598 6.598 20 O -0.361 6.361 21 C 0.121 3.879 22 C -0.178 4.178 23 C -0.132 4.132 24 C -0.182 4.182 25 C 0.112 3.888 26 C -0.081 4.081 27 H 0.101 0.899 28 C -0.128 4.128 29 H 0.056 0.944 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.258 0.742 35 H 0.332 0.668 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.046 0.954 50 H 0.080 0.920 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 16.269 10.604 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.543 4.543 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.213 1.213 13 N -0.290 5.290 14 C -0.018 4.018 15 H 0.085 0.915 16 C -0.020 4.020 17 N -0.343 5.343 18 C 0.416 3.584 19 O -0.490 6.490 20 O -0.275 6.275 21 C 0.085 3.915 22 C -0.236 4.236 23 C -0.189 4.189 24 C -0.239 4.239 25 C -0.010 4.010 26 C -0.101 4.101 27 H 0.119 0.881 28 C -0.186 4.186 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.335 16.239 10.355 21.403 hybrid contribution 0.114 -0.431 -1.532 1.596 sum -9.220 15.808 8.823 20.316 Atomic orbital electron populations 1.21765 0.96519 1.01061 1.00413 1.21602 0.93954 0.99067 1.01406 1.18941 0.94115 0.90556 0.84624 1.01413 1.21514 0.92723 1.36084 1.04016 0.92592 1.25678 1.02017 0.95581 0.95774 1.70023 1.36064 1.40170 1.09929 0.85588 0.81194 0.77559 0.77773 1.19032 1.20815 1.21339 1.60686 1.36946 1.01246 1.30127 1.22698 0.92658 0.89648 0.96785 0.91467 1.23033 0.99535 0.80073 0.99351 1.47167 1.42762 1.10777 1.33557 1.17711 0.79356 0.80713 0.80662 1.90888 1.47745 1.80653 1.29684 1.86319 1.63427 1.19658 1.58113 1.22488 0.87905 0.88267 0.92821 1.22461 0.95135 1.02970 1.02997 1.21866 1.04115 0.91516 1.01383 1.22488 1.02508 1.03382 0.95496 1.22338 0.92754 0.98521 0.87362 1.22188 0.97550 0.93915 0.96410 0.88123 1.21605 0.93716 1.01684 1.01594 0.92535 0.94999 0.92088 0.93969 0.91597 0.93291 0.84819 0.93573 0.90626 0.91612 0.88792 0.92622 0.91253 0.87736 0.90842 0.92780 0.88676 0.92163 0.90561 0.89105 0.93451 0.90156 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.65 71.98 0.69 -4.49 16 2 C -0.12 -5.59 5.35 30.59 0.16 -5.43 16 3 C 0.23 10.91 1.91 44.17 0.08 10.99 16 4 H -0.03 -1.75 7.73 -2.39 -0.02 -1.77 16 5 C -0.50 -27.26 8.58 25.60 0.22 -27.04 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.40 5.29 84.65 0.45 0.85 16 8 N -0.92 -53.13 11.29 21.45 0.24 -52.89 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 N -0.66 -25.45 6.17 -466.24 -2.88 -28.33 16 14 C 0.09 3.29 2.55 46.31 0.12 3.41 16 15 H 0.07 2.80 7.71 -2.38 -0.02 2.79 16 16 C 0.10 3.58 6.36 86.85 0.55 4.14 16 17 N -0.60 -18.72 3.33 -942.09 -3.13 -21.85 16 18 C 0.66 21.85 7.93 129.79 1.03 22.88 16 19 O -0.60 -23.05 12.14 19.82 0.24 -22.80 16 20 O -0.36 -9.86 9.49 -55.51 -0.53 -10.38 16 21 C 0.12 2.61 1.13 -10.79 -0.01 2.60 16 22 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 23 C -0.13 -1.78 8.85 71.98 0.64 -1.14 16 24 C -0.18 -4.11 8.37 71.98 0.60 -3.50 16 25 C 0.11 2.70 6.49 86.73 0.56 3.26 16 26 C -0.08 -2.09 3.24 -9.61 -0.03 -2.12 16 27 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 28 C -0.13 -3.14 9.16 71.98 0.66 -2.48 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.92 6.65 -2.38 -0.02 1.90 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 3.51 5.94 -2.39 -0.01 3.50 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.33 11.39 6.17 -89.69 -0.55 10.83 16 36 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 37 H 0.08 2.42 7.81 -2.39 -0.02 2.40 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.63 5.88 -2.39 -0.01 1.61 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.08 1.75 7.76 -2.39 -0.02 1.73 16 48 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.05 1.20 8.06 -2.39 -0.02 1.18 16 50 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.58 394.23 2.63 -62.95 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.33 Total: 28.54 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 6.33 Total: -1.20 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.77 Total: -103.07 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.29 Total: -33.19 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.58 2.63 -62.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152256.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.955 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds