Wall clock time and date at job start Tue Mar 31 2020 10:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47189 * 2 1 4 4 H 1.09000 * 109.47069 * 305.88973 * 3 2 1 5 5 C 1.50697 * 109.47199 * 185.88904 * 3 2 1 6 6 H 1.08001 * 120.00287 * 240.00550 * 5 3 2 7 7 C 1.37884 * 120.00095 * 59.99908 * 5 3 2 8 8 N 1.31509 * 119.99906 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99901 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47147 * 90.00222 * 9 7 5 11 11 H 1.48496 * 109.47033 * 209.99911 * 9 7 5 12 12 H 1.48502 * 109.47303 * 330.00303 * 9 7 5 13 13 N 1.46899 * 109.46821 * 65.89027 * 3 2 1 14 14 C 1.46902 * 110.99649 * 260.18281 * 13 3 2 15 15 H 1.09000 * 110.64000 * 34.07828 * 14 13 3 16 16 C 1.54321 * 110.71966 * 270.73872 * 14 13 3 17 17 N 1.47022 * 107.27287 * 219.44296 * 16 14 13 18 18 C 1.34770 * 125.65203 * 178.97688 * 17 16 14 19 19 O 1.21516 * 119.99908 * 0.02562 * 18 17 16 20 20 O 1.34639 * 120.00406 * 180.02562 * 18 17 16 21 21 C 1.45199 * 117.00300 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.46767 * 60.00084 * 21 20 18 23 23 C 1.52995 * 109.47031 * 179.97438 * 21 20 18 24 24 C 1.53004 * 109.47173 * 300.00362 * 21 20 18 25 25 C 1.47475 * 108.72182 * 358.98183 * 17 16 14 26 26 C 1.54910 * 104.81109 * 24.06457 * 25 17 16 27 27 H 1.09004 * 111.00272 * 204.95222 * 26 25 17 28 28 C 1.52999 * 111.00456 * 81.13919 * 26 25 17 29 29 H 1.08999 * 109.47081 * 56.77358 * 1 2 3 30 30 H 1.08997 * 109.47043 * 176.77173 * 1 2 3 31 31 H 1.08998 * 109.46845 * 296.77296 * 1 2 3 32 32 H 1.09005 * 109.47325 * 240.00428 * 2 1 3 33 33 H 1.09000 * 109.47455 * 120.00476 * 2 1 3 34 34 H 0.96995 * 119.99963 * 179.97438 * 8 7 5 35 35 H 1.00899 * 111.00063 * 136.23135 * 13 3 2 36 36 H 1.08993 * 109.88498 * 338.86457 * 16 14 13 37 37 H 1.09000 * 109.88094 * 99.87489 * 16 14 13 38 38 H 1.09003 * 109.46659 * 60.00221 * 22 21 20 39 39 H 1.09000 * 109.46884 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.47272 * 299.99749 * 22 21 20 41 41 H 1.09005 * 109.46959 * 60.00757 * 23 21 20 42 42 H 1.09010 * 109.47128 * 180.02562 * 23 21 20 43 43 H 1.08997 * 109.47873 * 300.00171 * 23 21 20 44 44 H 1.08995 * 109.47025 * 60.00213 * 24 21 20 45 45 H 1.09000 * 109.46777 * 180.02562 * 24 21 20 46 46 H 1.08996 * 109.47096 * 299.99544 * 24 21 20 47 47 H 1.09004 * 110.34362 * 265.25290 * 25 17 16 48 48 H 1.08994 * 110.40724 * 142.91278 * 25 17 16 49 49 H 1.09005 * 109.47211 * 304.58463 * 28 26 25 50 50 H 1.09005 * 109.47197 * 64.57756 * 28 26 25 51 51 H 1.08998 * 109.47296 * 184.58388 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5931 1.9859 -0.8326 5 6 3.5399 1.4450 -0.1458 6 1 4.1566 1.8855 0.6237 7 6 4.1251 0.8848 -1.2615 8 7 3.3743 0.3488 -2.1988 9 14 5.9843 0.8873 -1.4418 10 1 6.5422 -0.3479 -0.8350 11 1 6.3419 0.9361 -2.8823 12 1 6.5470 2.0756 -0.7515 13 7 1.6698 2.0927 1.2642 14 6 0.4777 2.9341 1.0940 15 1 -0.2023 2.4940 0.3647 16 6 0.8752 4.3668 0.6807 17 7 -0.0149 5.2910 1.3984 18 6 0.0236 6.6361 1.3234 19 8 0.8464 7.1817 0.6149 20 8 -0.8494 7.3753 2.0333 21 6 -0.7493 8.8181 1.9043 22 6 -0.9670 9.2157 0.4430 23 6 -1.8151 9.4833 2.7775 24 6 0.6392 9.2755 2.3559 25 6 -0.9572 4.5029 2.2143 26 6 -0.2397 3.1508 2.4526 27 1 -0.9595 2.3552 2.6456 28 6 0.7716 3.2605 3.5954 29 1 -0.3633 0.5631 -0.8596 30 1 -0.3633 -1.0260 -0.0579 31 1 -0.3633 0.4629 0.9175 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7859 -0.0449 -2.9838 35 1 2.4405 2.6283 1.6346 36 1 1.9113 4.5590 0.9589 37 1 0.7515 4.4900 -0.3953 38 1 -1.9563 8.8899 0.1213 39 1 -0.8924 10.2989 0.3462 40 1 -0.2081 8.7418 -0.1795 41 1 -1.6603 9.2001 3.8187 42 1 -1.7403 10.5665 2.6803 43 1 -2.8041 9.1575 2.4555 44 1 1.3980 8.8016 1.7334 45 1 0.7140 10.3586 2.2594 46 1 0.7942 8.9922 3.3969 47 1 -1.8897 4.3470 1.6718 48 1 -1.1486 5.0032 3.1636 49 1 1.4713 4.0695 3.3851 50 1 0.2457 3.4683 4.5273 51 1 1.3184 2.3222 3.6882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152257.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:22 Heat of formation + Delta-G solvation = -87.094255 kcal Electronic energy + Delta-G solvation = -27976.051405 eV Core-core repulsion = 24296.220789 eV Total energy + Delta-G solvation = -3679.830616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75798 -39.09374 -36.74587 -35.57309 -34.10712 -32.69020 -31.70264 -30.64953 -28.16623 -27.56404 -27.48491 -26.54069 -25.95421 -23.39402 -22.50468 -21.28926 -19.67882 -19.37363 -19.22491 -17.83523 -16.69521 -16.46888 -16.41625 -15.34411 -15.08486 -14.78251 -14.34626 -14.02347 -13.91712 -13.77813 -13.40226 -13.13462 -12.76533 -12.65386 -12.54283 -12.52738 -12.23717 -12.07681 -12.01453 -11.93106 -11.82930 -11.61883 -11.47019 -11.35787 -11.17322 -11.01001 -10.93226 -10.67251 -10.61477 -10.45208 -10.38752 -10.12776 -9.93450 -9.67660 -9.44933 -8.87359 -8.57065 -8.46231 -7.37728 -6.05594 -4.13535 2.17450 2.96934 3.28475 3.35495 3.38405 3.94535 4.38030 4.59264 4.62777 4.71944 4.77298 4.83746 5.05294 5.25159 5.29694 5.33887 5.38468 5.45350 5.51945 5.53191 5.60612 5.63719 5.65582 5.73571 5.81619 5.82904 5.97153 6.03561 6.13860 6.19172 6.23536 6.30952 6.32331 6.36806 6.39594 6.46051 6.53199 6.58974 6.66076 7.01044 7.09745 7.39586 7.50526 7.63630 7.74224 7.89200 8.20348 8.31748 8.46000 8.58434 8.96986 9.52928 10.99118 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.003476 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.472661 B = 8052.683099 C = 8944.783015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.011 0.989 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.086 3.914 15 H 0.092 0.908 16 C 0.101 3.899 17 N -0.596 5.596 18 C 0.663 3.337 19 O -0.570 6.570 20 O -0.364 6.364 21 C 0.135 3.865 22 C -0.183 4.183 23 C -0.139 4.139 24 C -0.183 4.183 25 C 0.106 3.894 26 C -0.096 4.096 27 H 0.090 0.910 28 C -0.133 4.133 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.336 0.664 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.047 0.953 50 H 0.045 0.955 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 12.841 9.966 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.028 0.972 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.298 5.298 14 C -0.027 4.027 15 H 0.111 0.889 16 C -0.022 4.022 17 N -0.337 5.337 18 C 0.418 3.582 19 O -0.459 6.459 20 O -0.279 6.279 21 C 0.098 3.902 22 C -0.241 4.241 23 C -0.196 4.196 24 C -0.240 4.240 25 C -0.017 4.017 26 C -0.115 4.115 27 H 0.109 0.891 28 C -0.191 4.191 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.535 12.516 9.792 19.636 hybrid contribution 1.356 0.832 -0.797 1.780 sum -10.179 13.348 8.995 19.045 Atomic orbital electron populations 1.21839 0.99671 0.98873 0.99702 1.21537 0.91445 0.99491 1.01941 1.19189 0.94435 0.91246 0.84298 0.97154 1.21400 0.91481 1.38668 1.05080 0.92349 1.24895 0.98130 0.95006 0.95659 1.69875 1.34802 1.38429 1.09268 0.86571 0.85633 0.78451 0.77197 1.20629 1.21276 1.19941 1.60882 1.06147 1.31522 1.31286 1.22789 0.95477 0.88932 0.95477 0.88949 1.22989 0.93548 0.89126 0.96572 1.47168 1.36884 1.01472 1.48214 1.17543 0.80023 0.81551 0.79074 1.90902 1.40520 1.70588 1.43905 1.86292 1.55623 1.20594 1.65360 1.22019 0.96627 0.75012 0.96495 1.22517 1.03457 1.02286 0.95802 1.21842 0.97980 1.00039 0.99750 1.22514 0.97134 1.02070 1.02331 1.22480 0.92225 0.91962 0.95046 1.22402 0.97786 0.95043 0.96309 0.89133 1.21583 0.98625 1.02925 0.95948 0.94564 0.95278 0.93719 0.89259 0.94413 0.92863 0.84497 0.90996 0.91425 0.92278 0.91323 0.89275 0.91551 0.90301 0.91562 0.89269 0.91332 0.92259 0.91519 0.90526 0.93356 0.93632 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.68 37.16 0.32 -2.42 16 2 C -0.11 -2.42 5.45 -26.73 -0.15 -2.56 16 3 C 0.22 5.02 2.12 -68.86 -0.15 4.87 16 4 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 5 C -0.53 -13.78 8.60 -34.44 -0.30 -14.07 16 6 H 0.06 1.51 7.42 -52.49 -0.39 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -12.68 4.94 -99.03 -0.49 -13.17 16 14 C 0.09 1.39 1.98 -65.88 -0.13 1.26 16 15 H 0.09 1.57 6.22 -51.93 -0.32 1.25 16 16 C 0.10 1.71 6.22 -3.07 -0.02 1.69 16 17 N -0.60 -9.16 3.31 -176.27 -0.58 -9.74 16 18 C 0.66 10.81 7.93 54.05 0.43 11.24 16 19 O -0.57 -10.62 12.21 -19.28 -0.24 -10.86 16 20 O -0.36 -5.08 9.42 -40.32 -0.38 -5.46 16 21 C 0.14 1.55 1.13 -90.62 -0.10 1.44 16 22 C -0.18 -2.08 8.37 37.16 0.31 -1.76 16 23 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 24 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 25 C 0.11 1.32 6.39 -2.50 -0.02 1.30 16 26 C -0.10 -1.24 3.63 -88.47 -0.32 -1.57 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 C -0.13 -1.71 8.40 37.16 0.31 -1.40 16 29 H 0.04 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.78 6.83 -51.93 -0.35 0.43 16 32 H 0.09 2.32 5.94 -51.93 -0.31 2.01 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.34 6.50 6.81 -39.29 -0.27 6.23 16 36 H 0.07 1.32 7.53 -51.93 -0.39 0.93 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.88 7.95 -51.93 -0.41 0.46 16 49 H 0.05 0.67 7.86 -51.93 -0.41 0.26 16 50 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 1.07 7.57 -51.93 -0.39 0.68 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -28.32 389.07 -8.78 -37.10 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -9.30 Total: 7.13 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.74 Total: -2.89 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.45 Total: -46.83 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.62 Total: -16.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.32 -8.78 -37.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152257.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.995 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds