Wall clock time and date at job start Tue Mar 31 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47253 * 2 1 4 4 C 1.42905 * 114.00071 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47137 * 185.16234 * 5 4 3 7 7 C 1.53003 * 112.84749 * 296.34047 * 6 5 4 8 8 N 1.46495 * 109.47312 * 296.26499 * 7 6 5 9 9 C 1.34773 * 120.00491 * 175.13336 * 8 7 6 10 10 O 1.21292 * 119.99648 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00393 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47148 * 40.00349 * 11 9 8 13 13 N 1.46902 * 109.47173 * 160.00251 * 11 9 8 14 14 C 1.53001 * 109.47162 * 279.99983 * 11 9 8 15 15 C 1.52997 * 109.46925 * 174.99494 * 14 11 9 16 16 C 1.50703 * 109.46830 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00124 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99806 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00299 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46981 * 90.00273 * 20 18 16 22 22 H 1.48502 * 109.47180 * 210.00054 * 20 18 16 23 23 H 1.48495 * 109.47165 * 330.00229 * 20 18 16 24 24 C 1.53786 * 113.61285 * 67.53340 * 6 5 4 25 25 C 1.53947 * 87.01698 * 89.23440 * 24 6 5 26 26 C 1.53774 * 113.61748 * 165.14163 * 6 5 4 27 27 H 1.09000 * 109.47241 * 300.00421 * 1 2 3 28 28 H 1.09004 * 109.47215 * 60.00675 * 1 2 3 29 29 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47241 * 239.99579 * 2 1 3 31 31 H 1.09002 * 109.46959 * 119.99806 * 2 1 3 32 32 H 1.08996 * 109.47125 * 59.99588 * 4 3 2 33 33 H 1.08999 * 109.46505 * 299.99484 * 4 3 2 34 34 H 1.08997 * 109.47388 * 65.15773 * 5 4 3 35 35 H 1.09002 * 109.46876 * 305.15582 * 5 4 3 36 36 H 1.09002 * 109.47271 * 176.25905 * 7 6 5 37 37 H 1.08999 * 109.47073 * 56.26732 * 7 6 5 38 38 H 0.97002 * 119.99850 * 355.13869 * 8 7 6 39 39 H 1.00909 * 110.99602 * 296.04410 * 13 11 9 40 40 H 1.00891 * 111.00380 * 59.99888 * 13 11 9 41 41 H 1.09000 * 109.47157 * 295.00097 * 14 11 9 42 42 H 1.09000 * 109.47017 * 55.00232 * 14 11 9 43 43 H 1.09000 * 109.47696 * 300.00274 * 15 14 11 44 44 H 1.09008 * 109.47184 * 60.00820 * 15 14 11 45 45 H 0.96997 * 120.00491 * 179.97438 * 19 18 16 46 46 H 1.09002 * 113.61225 * 203.75068 * 24 6 5 47 47 H 1.09000 * 113.61833 * 334.65152 * 24 6 5 48 48 H 1.09002 * 113.53764 * 270.81135 * 25 24 6 49 49 H 1.09006 * 113.74429 * 139.94650 * 25 24 6 50 50 H 1.09000 * 113.61572 * 25.35155 * 26 6 5 51 51 H 1.09004 * 113.61638 * 156.16407 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3448 3.0607 -0.1316 7 6 6.0938 2.4558 1.0576 8 7 5.7620 3.2014 2.2742 9 6 6.2302 2.7864 3.4678 10 8 6.9260 1.7951 3.5349 11 6 5.8893 3.5537 4.7192 12 1 4.8494 3.8772 4.6751 13 7 6.0842 2.6902 5.8915 14 6 6.8001 4.7780 4.8307 15 6 6.3728 5.6238 6.0319 16 6 7.2703 6.8294 6.1421 17 1 8.0656 6.9777 5.4267 18 6 7.0760 7.7431 7.1562 19 7 6.1078 7.5623 8.0277 20 14 8.1880 9.2379 7.2924 21 1 7.6092 10.3585 6.5085 22 1 8.3054 9.6393 8.7173 23 1 9.5334 8.9042 6.7597 24 6 5.8847 2.6032 -1.4969 25 6 5.6759 4.0516 -1.9747 26 6 5.8194 4.4754 -0.5034 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.8333 0.9766 -0.8907 33 1 3.8339 0.9765 0.8892 34 1 3.5023 3.4011 0.9313 35 1 3.3469 3.4417 -0.8414 36 1 7.1674 2.5128 0.8779 37 1 5.8007 1.4131 1.1792 38 1 5.2052 3.9939 2.2206 39 1 5.4477 1.9073 5.8737 40 1 7.0411 2.3768 5.9548 41 1 7.8318 4.4525 4.9641 42 1 6.7217 5.3733 3.9210 43 1 5.3411 5.9494 5.8985 44 1 6.4512 5.0286 6.9417 45 1 5.9713 8.2048 8.7414 46 1 6.9309 2.2980 -1.4728 47 1 5.2433 1.8796 -2.0000 48 1 4.6837 4.2352 -2.3871 49 1 6.4759 4.4220 -2.6158 50 1 5.1251 5.2611 -0.2056 51 1 6.8471 4.6835 -0.2058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424148708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:11 Heat of formation + Delta-G solvation = -94.799688 kcal Electronic energy + Delta-G solvation = -26587.596376 eV Core-core repulsion = 22907.431627 eV Total energy + Delta-G solvation = -3680.164749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58808 -39.29877 -38.09458 -35.22522 -34.42467 -32.77624 -32.54300 -30.50986 -30.07046 -28.17473 -26.15748 -26.04727 -24.12314 -23.25672 -23.09151 -22.01187 -20.60244 -19.80229 -18.45486 -17.28583 -17.02651 -16.62725 -16.32160 -16.07426 -15.53911 -15.39527 -15.07695 -14.76780 -14.51204 -14.41740 -14.13859 -13.89293 -13.37572 -13.26821 -12.82384 -12.78743 -12.54576 -12.30595 -12.23471 -12.03219 -11.93742 -11.65634 -11.51167 -11.46647 -11.32615 -10.88616 -10.79270 -10.66853 -10.53996 -10.51616 -10.34481 -10.08570 -9.85980 -9.78017 -9.35483 -9.01598 -8.96874 -8.33141 -8.18241 -5.92548 -3.94654 2.81927 3.20831 3.35208 3.36127 3.41761 3.45202 4.20043 4.21079 4.40295 4.51064 4.52464 4.67991 4.71868 4.81274 4.88258 4.93864 5.01378 5.05039 5.10858 5.16872 5.18997 5.35250 5.40498 5.42933 5.47287 5.48059 5.55991 5.56685 5.59265 5.63133 5.70592 5.76222 5.78263 5.86284 5.88107 6.02190 6.15773 6.43868 6.50184 6.67659 6.90575 7.10820 7.40821 7.63830 7.77700 7.82329 7.97993 8.14735 8.35806 8.49895 9.13424 9.68391 11.18375 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.002744 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.880365 B =10203.415225 C =10942.651892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.390 6.390 4 C 0.063 3.937 5 C -0.093 4.093 6 C -0.094 4.094 7 C 0.133 3.867 8 N -0.726 5.726 9 C 0.483 3.517 10 O -0.557 6.557 11 C 0.078 3.922 12 H 0.097 0.903 13 N -0.807 5.807 14 C -0.094 4.094 15 C 0.031 3.969 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.130 4.130 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.333 0.667 40 H 0.347 0.653 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.522 -13.652 -21.607 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.309 6.309 4 C -0.013 4.013 5 C -0.130 4.130 6 C -0.094 4.094 7 C 0.008 3.992 8 N -0.379 5.379 9 C 0.268 3.732 10 O -0.435 6.435 11 C -0.038 4.038 12 H 0.115 0.885 13 N -0.335 5.335 14 C -0.133 4.133 15 C -0.006 4.006 16 C -0.560 4.560 17 H 0.070 0.930 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.166 4.166 25 C -0.177 4.177 26 C -0.167 4.167 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.237 0.763 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.103 0.897 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.424 -13.497 -20.942 25.997 hybrid contribution 0.777 0.192 -0.672 1.045 sum -6.647 -13.305 -21.614 26.237 Atomic orbital electron populations 1.21744 0.93690 1.02235 1.03210 1.22445 0.95642 0.83830 1.00006 1.87870 1.21217 1.26419 1.95443 1.22500 0.81060 0.97514 1.00276 1.21235 0.92791 0.95317 1.03704 1.22062 0.94638 0.98091 0.94652 1.21292 0.98929 0.95740 0.83194 1.46106 1.54069 1.31184 1.06531 1.22739 0.78826 0.85233 0.86372 1.90641 1.38357 1.27383 1.87112 1.21832 1.02537 0.94868 0.84553 0.88517 1.59000 1.10947 1.24642 1.38867 1.21645 0.97224 0.92657 1.01737 1.19017 0.95995 0.93189 0.92402 1.21280 1.15420 1.07220 1.12087 0.93013 1.24993 0.95444 0.98085 0.95827 1.69973 1.31125 1.36223 1.15873 0.86656 0.81186 0.83328 0.77163 1.20782 1.21267 1.19999 1.23006 1.01522 0.97259 0.94836 1.22833 1.02096 0.96119 0.96644 1.22982 1.02252 0.95407 0.96082 0.91705 0.91896 0.91136 0.93582 0.93411 0.93273 0.93193 0.90533 0.90434 0.91689 0.91715 0.76259 0.85529 0.83874 0.92909 0.92860 0.96886 0.94684 0.93106 0.89661 0.91161 0.90072 0.91291 0.90822 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.15 0.38 -0.66 16 2 C 0.06 0.47 6.66 37.15 0.25 0.71 16 3 O -0.39 -4.07 10.34 -35.23 -0.36 -4.43 16 4 C 0.06 0.57 5.52 37.16 0.21 0.77 16 5 C -0.09 -0.79 4.84 -26.73 -0.13 -0.92 16 6 C -0.09 -0.76 0.48 -153.70 -0.07 -0.84 16 7 C 0.13 1.42 4.78 -4.04 -0.02 1.40 16 8 N -0.73 -8.93 5.22 -60.30 -0.31 -9.24 16 9 C 0.48 7.59 7.07 -10.99 -0.08 7.51 16 10 O -0.56 -10.30 16.25 5.55 0.09 -10.21 16 11 C 0.08 1.32 3.15 -68.87 -0.22 1.10 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.81 8.44 -5.66 -0.05 -13.86 16 14 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 15 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.13 -0.90 7.05 -25.83 -0.18 -1.09 16 25 C -0.14 -0.96 7.74 -25.83 -0.20 -1.16 16 26 C -0.13 -1.04 7.04 -25.92 -0.18 -1.23 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 6.74 -51.93 -0.35 0.04 16 33 H 0.05 0.49 6.99 -51.93 -0.36 0.13 16 34 H 0.08 0.71 7.41 -51.93 -0.38 0.33 16 35 H 0.08 0.64 7.31 -51.93 -0.38 0.26 16 36 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.06 0.74 6.82 -51.93 -0.35 0.39 16 38 H 0.40 4.39 7.79 -40.82 -0.32 4.07 16 39 H 0.33 4.97 9.06 -39.29 -0.36 4.62 16 40 H 0.35 6.04 8.58 -39.30 -0.34 5.70 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.98 7.75 -51.92 -0.40 0.57 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 47 H 0.07 0.46 6.83 -51.93 -0.35 0.11 16 48 H 0.08 0.53 7.60 -51.93 -0.39 0.13 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 51 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -32.79 405.95 -9.17 -41.96 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -9.44 Total: 8.48 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -0.92 Total: -9.31 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.37 Total: -49.40 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.27 Total: -14.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.79 -9.17 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424148708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.841 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds