Wall clock time and date at job start Tue Mar 31 2020 11:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47253 * 2 1 4 4 C 1.42905 * 114.00071 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46874 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47137 * 185.16234 * 5 4 3 7 7 C 1.53003 * 112.84749 * 296.34047 * 6 5 4 8 8 N 1.46495 * 109.47312 * 296.26499 * 7 6 5 9 9 C 1.34773 * 120.00491 * 175.13336 * 8 7 6 10 10 O 1.21292 * 119.99648 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00393 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47148 * 40.00349 * 11 9 8 13 13 N 1.46902 * 109.47173 * 160.00251 * 11 9 8 14 14 C 1.53001 * 109.47162 * 279.99983 * 11 9 8 15 15 C 1.52997 * 109.46925 * 174.99494 * 14 11 9 16 16 C 1.50703 * 109.46830 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00124 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99806 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00299 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46981 * 90.00273 * 20 18 16 22 22 H 1.48502 * 109.47180 * 210.00054 * 20 18 16 23 23 H 1.48495 * 109.47165 * 330.00229 * 20 18 16 24 24 C 1.53786 * 113.61285 * 67.53340 * 6 5 4 25 25 C 1.53947 * 87.01698 * 89.23440 * 24 6 5 26 26 C 1.53774 * 113.61748 * 165.14163 * 6 5 4 27 27 H 1.09000 * 109.47241 * 300.00421 * 1 2 3 28 28 H 1.09004 * 109.47215 * 60.00675 * 1 2 3 29 29 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47241 * 239.99579 * 2 1 3 31 31 H 1.09002 * 109.46959 * 119.99806 * 2 1 3 32 32 H 1.08996 * 109.47125 * 59.99588 * 4 3 2 33 33 H 1.08999 * 109.46505 * 299.99484 * 4 3 2 34 34 H 1.08997 * 109.47388 * 65.15773 * 5 4 3 35 35 H 1.09002 * 109.46876 * 305.15582 * 5 4 3 36 36 H 1.09002 * 109.47271 * 176.25905 * 7 6 5 37 37 H 1.08999 * 109.47073 * 56.26732 * 7 6 5 38 38 H 0.97002 * 119.99850 * 355.13869 * 8 7 6 39 39 H 1.00909 * 110.99602 * 296.04410 * 13 11 9 40 40 H 1.00891 * 111.00380 * 59.99888 * 13 11 9 41 41 H 1.09000 * 109.47157 * 295.00097 * 14 11 9 42 42 H 1.09000 * 109.47017 * 55.00232 * 14 11 9 43 43 H 1.09000 * 109.47696 * 300.00274 * 15 14 11 44 44 H 1.09008 * 109.47184 * 60.00820 * 15 14 11 45 45 H 0.96997 * 120.00491 * 179.97438 * 19 18 16 46 46 H 1.09002 * 113.61225 * 203.75068 * 24 6 5 47 47 H 1.09000 * 113.61833 * 334.65152 * 24 6 5 48 48 H 1.09002 * 113.53764 * 270.81135 * 25 24 6 49 49 H 1.09006 * 113.74429 * 139.94650 * 25 24 6 50 50 H 1.09000 * 113.61572 * 25.35155 * 26 6 5 51 51 H 1.09004 * 113.61638 * 156.16407 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 6 5.3448 3.0607 -0.1316 7 6 6.0938 2.4558 1.0576 8 7 5.7620 3.2014 2.2742 9 6 6.2302 2.7864 3.4678 10 8 6.9260 1.7951 3.5349 11 6 5.8893 3.5537 4.7192 12 1 4.8494 3.8772 4.6751 13 7 6.0842 2.6902 5.8915 14 6 6.8001 4.7780 4.8307 15 6 6.3728 5.6238 6.0319 16 6 7.2703 6.8294 6.1421 17 1 8.0656 6.9777 5.4267 18 6 7.0760 7.7431 7.1562 19 7 6.1078 7.5623 8.0277 20 14 8.1880 9.2379 7.2924 21 1 7.6092 10.3585 6.5085 22 1 8.3054 9.6393 8.7173 23 1 9.5334 8.9042 6.7597 24 6 5.8847 2.6032 -1.4969 25 6 5.6759 4.0516 -1.9747 26 6 5.8194 4.4754 -0.5034 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.8333 0.9766 -0.8907 33 1 3.8339 0.9765 0.8892 34 1 3.5023 3.4011 0.9313 35 1 3.3469 3.4417 -0.8414 36 1 7.1674 2.5128 0.8779 37 1 5.8007 1.4131 1.1792 38 1 5.2052 3.9939 2.2206 39 1 5.4477 1.9073 5.8737 40 1 7.0411 2.3768 5.9548 41 1 7.8318 4.4525 4.9641 42 1 6.7217 5.3733 3.9210 43 1 5.3411 5.9494 5.8985 44 1 6.4512 5.0286 6.9417 45 1 5.9713 8.2048 8.7414 46 1 6.9309 2.2980 -1.4728 47 1 5.2433 1.8796 -2.0000 48 1 4.6837 4.2352 -2.3871 49 1 6.4759 4.4220 -2.6158 50 1 5.1251 5.2611 -0.2056 51 1 6.8471 4.6835 -0.2058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424148708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:10 Heat of formation + Delta-G solvation = -117.263695 kcal Electronic energy + Delta-G solvation = -26588.570488 eV Core-core repulsion = 22907.431627 eV Total energy + Delta-G solvation = -3681.138862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47476 -40.39544 -38.79117 -36.81677 -35.52483 -34.80247 -33.18870 -31.92549 -31.17981 -29.24243 -27.69120 -26.75356 -25.41754 -24.38080 -23.69603 -22.84022 -22.21057 -21.17567 -19.22297 -18.63115 -18.07354 -17.71196 -17.53923 -17.18216 -16.86030 -16.46214 -16.16592 -16.08857 -15.49163 -15.43084 -15.26972 -14.86176 -14.72522 -14.27561 -14.18155 -13.81704 -13.45657 -13.42901 -13.35464 -13.16539 -12.87146 -12.79239 -12.68320 -12.51446 -12.28717 -12.25946 -12.09948 -11.97002 -11.75848 -11.65088 -11.40759 -11.26895 -11.14781 -11.01521 -10.96589 -10.55700 -10.48373 -10.10376 -9.61419 -8.13256 -6.23520 1.41791 1.43330 1.51879 1.54520 2.17922 2.45069 2.64601 3.19732 3.50098 3.52820 3.59523 3.73940 3.87826 3.95494 4.00736 4.11223 4.11275 4.19042 4.22485 4.32429 4.39467 4.42736 4.46842 4.47927 4.69435 4.72264 4.78712 4.82055 4.88009 4.90417 4.95212 4.98278 5.00843 5.07506 5.14643 5.19547 5.25303 5.26040 5.34382 5.44718 5.55817 5.57800 5.85157 5.99273 6.09922 6.24107 6.30995 6.45288 6.53547 6.95238 7.14821 7.44559 8.98033 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.002744 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.880365 B =10203.415225 C =10942.651892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.063 3.937 5 C -0.089 4.089 6 C -0.086 4.086 7 C 0.133 3.867 8 N -0.711 5.711 9 C 0.488 3.512 10 O -0.584 6.584 11 C 0.084 3.916 12 H 0.107 0.893 13 N -0.819 5.819 14 C -0.080 4.080 15 C 0.039 3.961 16 C -0.543 4.543 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.267 1.267 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.134 4.134 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.346 0.654 40 H 0.345 0.655 41 H 0.042 0.958 42 H 0.067 0.933 43 H -0.006 1.006 44 H 0.005 0.995 45 H 0.262 0.738 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.376 -13.385 -23.599 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.330 6.330 4 C -0.013 4.013 5 C -0.126 4.126 6 C -0.087 4.087 7 C 0.010 3.990 8 N -0.363 5.363 9 C 0.274 3.726 10 O -0.465 6.465 11 C -0.031 4.031 12 H 0.125 0.875 13 N -0.348 5.348 14 C -0.119 4.119 15 C 0.002 3.998 16 C -0.581 4.581 17 H 0.074 0.926 18 C -0.197 4.197 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.162 4.162 25 C -0.170 4.170 26 C -0.171 4.171 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.012 0.988 44 H 0.023 0.977 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.299 -13.224 -22.974 27.495 hybrid contribution 0.690 0.073 -0.056 0.696 sum -6.609 -13.151 -23.030 27.331 Atomic orbital electron populations 1.21764 0.92891 1.03344 1.02707 1.22629 0.96395 0.83051 1.00577 1.87845 1.21844 1.27806 1.95550 1.22521 0.80663 0.97756 1.00341 1.21197 0.92820 0.95102 1.03511 1.21996 0.94190 0.98361 0.94127 1.21398 0.98956 0.95502 0.83179 1.46006 1.52952 1.31124 1.06173 1.22311 0.78736 0.84781 0.86811 1.90633 1.39771 1.28597 1.87491 1.21632 1.02204 0.93813 0.85487 0.87476 1.58973 1.11167 1.25353 1.39270 1.21373 0.97119 0.93470 0.99892 1.18827 0.94627 0.92931 0.93401 1.21729 1.15848 1.08217 1.12271 0.92603 1.25909 0.96936 1.01393 0.95432 1.70106 1.32868 1.37531 1.16554 0.85535 0.79319 0.79422 0.77274 1.19599 1.20978 1.19111 1.23011 1.01776 0.97731 0.93643 1.22815 1.02745 0.95631 0.95820 1.22999 1.01789 0.95125 0.97196 0.92659 0.91896 0.89263 0.92264 0.93555 0.91931 0.94357 0.91496 0.89704 0.92295 0.92231 0.75246 0.84127 0.84154 0.93962 0.91413 0.98803 0.97676 0.92937 0.89452 0.90255 0.89364 0.90695 0.90771 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.15 10.34 -148.98 -1.54 -9.69 16 4 C 0.06 1.07 5.52 71.98 0.40 1.46 16 5 C -0.09 -1.38 4.84 30.59 0.15 -1.23 16 6 C -0.09 -1.27 0.48 -51.66 -0.02 -1.29 16 7 C 0.13 2.71 4.78 86.38 0.41 3.13 16 8 N -0.71 -16.80 5.22 -463.06 -2.42 -19.21 16 9 C 0.49 15.06 7.07 87.66 0.62 15.68 16 10 O -0.58 -21.40 16.25 -3.07 -0.05 -21.45 16 11 C 0.08 2.84 3.15 44.17 0.14 2.97 16 12 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.82 -28.26 8.44 -171.80 -1.45 -29.71 16 14 C -0.08 -3.24 4.78 30.59 0.15 -3.10 16 15 C 0.04 2.06 4.86 29.85 0.15 2.20 16 16 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 17 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 20 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 C -0.12 -1.47 7.05 31.18 0.22 -1.25 16 25 C -0.13 -1.52 7.74 31.18 0.24 -1.28 16 26 C -0.13 -1.92 7.04 31.12 0.22 -1.70 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.87 6.74 -2.39 -0.02 0.85 16 33 H 0.04 0.72 6.99 -2.39 -0.02 0.71 16 34 H 0.07 1.17 7.41 -2.39 -0.02 1.15 16 35 H 0.08 1.22 7.31 -2.39 -0.02 1.21 16 36 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.06 1.31 6.82 -2.39 -0.02 1.30 16 38 H 0.41 8.45 7.79 -92.71 -0.72 7.73 16 39 H 0.35 10.30 9.06 -89.69 -0.81 9.48 16 40 H 0.34 12.17 8.58 -89.70 -0.77 11.40 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.00 0.28 7.75 -2.38 -0.02 0.26 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.09 1.03 8.07 -2.39 -0.02 1.01 16 47 H 0.08 0.83 6.83 -2.39 -0.02 0.81 16 48 H 0.09 0.91 7.60 -2.39 -0.02 0.90 16 49 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 50 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 51 H 0.08 1.30 8.10 -2.38 -0.02 1.28 16 Total: -1.00 -70.11 405.95 0.05 -70.07 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.39 Total: 34.65 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.58 Total: -14.50 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.58 Total: -105.70 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.59 Total: -31.14 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -70.11 0.05 -70.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424148708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.197 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds