Wall clock time and date at job start Tue Mar 31 2020 10:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99919 * 2 1 4 4 C 1.46906 * 110.99464 * 123.94948 * 2 1 3 5 5 C 1.53004 * 109.46668 * 170.00024 * 4 2 1 6 6 C 1.52995 * 109.46932 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47236 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99862 * 269.99988 * 7 6 5 9 9 C 1.50703 * 109.46766 * 269.99465 * 8 7 6 10 10 H 1.07998 * 119.99986 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99628 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99480 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99981 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46727 * 89.99941 * 13 11 9 15 15 H 1.48496 * 109.46820 * 209.99712 * 13 11 9 16 16 H 1.48496 * 109.47296 * 329.99761 * 13 11 9 17 17 C 1.34778 * 120.00313 * 89.99560 * 7 6 5 18 18 O 1.21275 * 119.99638 * 359.97438 * 17 7 6 19 19 C 1.50705 * 120.00078 * 180.02562 * 17 7 6 20 20 C 1.53000 * 109.46871 * 179.97438 * 19 17 7 21 21 H 1.09000 * 109.49255 * 54.96968 * 20 19 17 22 22 C 1.53091 * 109.47862 * 175.00014 * 20 19 17 23 23 C 1.53176 * 109.21206 * 177.62293 * 22 20 19 24 24 C 1.53174 * 109.04061 * 302.98570 * 23 22 20 25 25 C 1.53097 * 109.16185 * 56.97999 * 24 23 22 26 26 O 1.42902 * 109.41493 * 302.39739 * 25 24 23 27 27 H 1.09004 * 109.46997 * 296.04971 * 1 2 3 28 28 H 1.09001 * 109.47139 * 56.04691 * 1 2 3 29 29 H 1.08995 * 109.47286 * 176.05265 * 1 2 3 30 30 H 1.08999 * 109.46576 * 183.95196 * 3 2 1 31 31 H 1.09001 * 109.47206 * 303.94848 * 3 2 1 32 32 H 1.08998 * 109.47562 * 63.95191 * 3 2 1 33 33 H 1.08997 * 109.46801 * 50.00253 * 4 2 1 34 34 H 1.08998 * 109.47208 * 289.99897 * 4 2 1 35 35 H 1.08997 * 109.46844 * 59.99727 * 5 4 2 36 36 H 1.09000 * 109.46706 * 299.99731 * 5 4 2 37 37 H 1.09004 * 109.47525 * 59.99815 * 6 5 4 38 38 H 1.08998 * 109.46828 * 299.99802 * 6 5 4 39 39 H 1.08997 * 109.47047 * 29.99325 * 8 7 6 40 40 H 1.08999 * 109.47203 * 149.99821 * 8 7 6 41 41 H 0.97008 * 119.99476 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.46997 * 60.00021 * 19 17 7 43 43 H 1.08998 * 109.46491 * 299.99793 * 19 17 7 44 44 H 1.09002 * 109.52401 * 57.68445 * 22 20 19 45 45 H 1.09004 * 109.52068 * 297.56090 * 22 20 19 46 46 H 1.08995 * 109.54674 * 62.85906 * 23 22 20 47 47 H 1.08999 * 109.54128 * 183.11874 * 23 22 20 48 48 H 1.08995 * 109.52612 * 176.89131 * 24 23 22 49 49 H 1.09004 * 109.52214 * 297.01676 * 24 23 22 50 50 H 1.08997 * 109.47580 * 62.37620 * 25 24 23 51 51 H 1.08994 * 109.47934 * 182.41016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 6 4.0525 -1.7536 2.1550 7 7 5.4975 -1.9344 1.9953 8 6 6.0148 -3.1051 1.2824 9 6 6.2367 -4.2307 2.2596 10 1 6.0142 -4.0884 3.3068 11 6 6.7227 -5.4425 1.8165 12 7 6.9158 -6.4249 2.6693 13 14 7.1069 -5.6888 0.0051 14 1 8.5180 -5.3083 -0.2578 15 1 6.9036 -7.1152 -0.3545 16 1 6.2044 -4.8388 -0.8124 17 6 6.3510 -1.0238 2.5041 18 8 5.9227 -0.0545 3.0937 19 6 7.8374 -1.2096 2.3392 20 6 8.5737 -0.0441 3.0028 21 1 8.2587 0.0402 4.0429 22 6 10.0829 -0.2945 2.9451 23 6 10.8163 0.9028 3.5574 24 6 10.4103 2.1747 2.8066 25 6 8.8887 2.3313 2.8695 26 8 8.2683 1.1708 2.3123 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0707 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 1.5088 -1.7406 1.1757 34 1 1.7974 -0.2247 2.0629 35 1 3.9908 0.0193 0.9324 36 1 3.7023 -1.4967 0.0453 37 1 3.5660 -2.7283 2.1927 38 1 3.8546 -1.2126 3.0804 39 1 5.2948 -3.4173 0.5260 40 1 6.9592 -2.8499 0.8018 41 1 7.2582 -7.2774 2.3576 42 1 8.0845 -1.2381 1.2780 43 1 8.1407 -2.1457 2.8082 44 1 10.3921 -0.4192 1.9073 45 1 10.3243 -1.1963 3.5079 46 1 10.5451 0.9977 4.6088 47 1 11.8926 0.7551 3.4691 48 1 10.8850 3.0390 3.2710 49 1 10.7271 2.1004 1.7662 50 1 8.5778 2.4466 3.9078 51 1 8.5901 3.2117 2.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087192578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:37 Heat of formation + Delta-G solvation = -94.107358 kcal Electronic energy + Delta-G solvation = -27412.602425 eV Core-core repulsion = 23732.467698 eV Total energy + Delta-G solvation = -3680.134727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.64390 -38.59740 -37.53106 -35.16924 -33.43070 -33.02466 -32.42849 -31.48132 -28.22680 -27.93239 -27.59045 -25.76897 -24.21180 -22.93727 -22.57332 -21.67033 -20.60443 -20.09662 -18.16712 -17.04276 -16.37654 -16.15997 -15.91652 -15.58406 -15.38372 -15.03862 -14.70463 -14.44342 -14.37149 -14.19504 -13.82266 -13.74297 -13.34379 -12.71546 -12.54162 -12.45448 -12.30734 -12.23792 -12.08334 -11.95180 -11.76517 -11.56936 -11.47013 -11.27907 -11.21167 -11.07016 -10.94189 -10.76070 -10.71803 -10.54589 -10.27076 -10.16631 -10.08184 -9.61056 -9.18934 -8.93816 -8.71026 -8.35188 -7.67668 -6.21300 -4.22788 3.18588 3.27563 3.29259 3.47336 3.77896 4.05629 4.09855 4.27731 4.83239 4.86216 4.93146 5.03408 5.09624 5.10711 5.15033 5.28367 5.34721 5.37729 5.45621 5.47077 5.57126 5.59681 5.64065 5.70710 5.73647 5.78371 5.80092 5.83152 5.90243 5.91780 5.98033 6.02547 6.03597 6.12564 6.14729 6.19127 6.35706 6.43039 6.49589 6.54104 6.63243 6.74367 7.03661 7.06373 7.41203 7.47545 7.55262 8.18789 8.45093 8.83966 9.04543 9.38908 10.91257 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.005362 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.706237 B = 5221.161422 C = 8467.960718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.593 5.593 8 C 0.208 3.792 9 C -0.540 4.540 10 H 0.078 0.922 11 C 0.077 3.923 12 N -0.892 5.892 13 Si 0.870 3.130 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.263 1.263 17 C 0.523 3.477 18 O -0.561 6.561 19 C -0.132 4.132 20 C 0.109 3.891 21 H 0.063 0.937 22 C -0.153 4.153 23 C -0.121 4.121 24 C -0.157 4.157 25 C 0.064 3.936 26 O -0.367 6.367 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.266 0.734 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.046 0.954 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 14.267 -2.827 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.323 5.323 8 C 0.087 3.913 9 C -0.579 4.579 10 H 0.096 0.904 11 C -0.127 4.127 12 N -0.529 5.529 13 Si 0.696 3.304 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.187 1.187 17 C 0.312 3.688 18 O -0.441 6.441 19 C -0.171 4.171 20 C 0.051 3.949 21 H 0.080 0.920 22 C -0.191 4.191 23 C -0.158 4.158 24 C -0.194 4.194 25 C -0.013 4.013 26 O -0.285 6.285 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.065 0.935 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.697 14.323 -3.106 14.673 hybrid contribution 0.214 -0.101 -0.010 0.237 sum -0.484 14.222 -3.116 14.568 Atomic orbital electron populations 1.22368 0.87682 1.02153 1.00138 1.61984 1.07482 1.14002 1.43752 1.22424 1.01517 0.88672 0.99989 1.22085 0.96020 0.98006 0.90858 1.21956 0.93742 1.01268 0.99863 1.21180 0.81212 1.00100 0.97550 1.47861 1.05302 1.23678 1.55467 1.19801 0.94754 0.83762 0.93005 1.21405 1.44756 0.95489 0.96232 0.90407 1.24875 0.94724 0.95662 0.97432 1.69897 1.44793 1.03749 1.34486 0.86943 0.79513 0.78061 0.85874 1.19836 1.20934 1.18746 1.20296 0.88642 0.81807 0.78102 1.90595 1.79382 1.30559 1.43557 1.21738 0.92793 0.99055 1.03559 1.21824 0.92358 0.84440 0.96245 0.91950 1.22243 0.95903 0.98657 1.02251 1.21568 1.00024 0.94673 0.99574 1.22215 0.97590 0.98215 1.01409 1.22443 0.91265 0.88985 0.98640 1.88008 1.70890 1.14583 1.55057 0.95880 0.91653 0.91363 0.90820 0.91812 0.95756 0.90616 0.94758 0.91706 0.91158 0.90386 0.91055 0.94831 0.95266 0.92396 0.88830 0.86282 0.91021 0.90494 0.91909 0.91719 0.91415 0.91272 0.93534 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.18 5.02 -251.25 -1.26 -8.44 16 3 C 0.02 0.27 9.32 60.06 0.56 0.83 16 4 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 5 C -0.13 -2.08 5.46 -26.73 -0.15 -2.23 16 6 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 7 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 8 C 0.21 4.59 4.03 -5.19 -0.02 4.57 16 9 C -0.54 -14.04 9.84 -34.44 -0.34 -14.38 16 10 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 11 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 13 Si 0.87 19.71 27.47 -169.99 -4.67 15.04 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 17 C 0.52 10.87 7.55 -10.98 -0.08 10.78 16 18 O -0.56 -12.65 15.00 -8.67 -0.13 -12.78 16 19 C -0.13 -2.39 3.97 -27.88 -0.11 -2.50 16 20 C 0.11 1.77 2.19 -26.68 -0.06 1.72 16 21 H 0.06 1.08 7.96 -51.93 -0.41 0.66 16 22 C -0.15 -2.01 5.41 -26.59 -0.14 -2.16 16 23 C -0.12 -1.35 6.03 -26.55 -0.16 -1.51 16 24 C -0.16 -1.69 6.14 -26.59 -0.16 -1.85 16 25 C 0.06 0.83 6.84 37.21 0.25 1.09 16 26 O -0.37 -6.20 9.66 -49.47 -0.48 -6.68 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.99 8.06 -51.93 -0.42 0.58 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 39 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 40 H 0.03 0.62 5.87 -51.93 -0.30 0.32 16 41 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.09 1.61 7.40 -51.93 -0.38 1.23 16 43 H 0.12 2.22 8.00 -51.93 -0.42 1.80 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -30.42 397.86 -9.89 -40.31 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -9.71 Total: 3.89 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.03 Total: 0.19 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.92 Total: -45.97 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.61 Total: -19.45 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.67 Total: 15.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.42 -9.89 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087192578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.797 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds