Wall clock time and date at job start Tue Mar 31 2020 10:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99919 * 2 1 4 4 C 1.46906 * 110.99464 * 123.94948 * 2 1 3 5 5 C 1.53004 * 109.46668 * 170.00024 * 4 2 1 6 6 C 1.52995 * 109.46932 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47236 * 180.02562 * 6 5 4 8 8 C 1.46505 * 119.99862 * 269.99988 * 7 6 5 9 9 C 1.50703 * 109.46766 * 269.99465 * 8 7 6 10 10 H 1.07998 * 119.99986 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99628 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99480 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99981 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.46727 * 89.99941 * 13 11 9 15 15 H 1.48496 * 109.46820 * 209.99712 * 13 11 9 16 16 H 1.48496 * 109.47296 * 329.99761 * 13 11 9 17 17 C 1.34778 * 120.00313 * 89.99560 * 7 6 5 18 18 O 1.21275 * 119.99638 * 359.97438 * 17 7 6 19 19 C 1.50705 * 120.00078 * 180.02562 * 17 7 6 20 20 C 1.53000 * 109.46871 * 179.97438 * 19 17 7 21 21 H 1.09000 * 109.49255 * 54.96968 * 20 19 17 22 22 C 1.53091 * 109.47862 * 175.00014 * 20 19 17 23 23 C 1.53176 * 109.21206 * 177.62293 * 22 20 19 24 24 C 1.53174 * 109.04061 * 302.98570 * 23 22 20 25 25 C 1.53097 * 109.16185 * 56.97999 * 24 23 22 26 26 O 1.42902 * 109.41493 * 302.39739 * 25 24 23 27 27 H 1.09004 * 109.46997 * 296.04971 * 1 2 3 28 28 H 1.09001 * 109.47139 * 56.04691 * 1 2 3 29 29 H 1.08995 * 109.47286 * 176.05265 * 1 2 3 30 30 H 1.08999 * 109.46576 * 183.95196 * 3 2 1 31 31 H 1.09001 * 109.47206 * 303.94848 * 3 2 1 32 32 H 1.08998 * 109.47562 * 63.95191 * 3 2 1 33 33 H 1.08997 * 109.46801 * 50.00253 * 4 2 1 34 34 H 1.08998 * 109.47208 * 289.99897 * 4 2 1 35 35 H 1.08997 * 109.46844 * 59.99727 * 5 4 2 36 36 H 1.09000 * 109.46706 * 299.99731 * 5 4 2 37 37 H 1.09004 * 109.47525 * 59.99815 * 6 5 4 38 38 H 1.08998 * 109.46828 * 299.99802 * 6 5 4 39 39 H 1.08997 * 109.47047 * 29.99325 * 8 7 6 40 40 H 1.08999 * 109.47203 * 149.99821 * 8 7 6 41 41 H 0.97008 * 119.99476 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.46997 * 60.00021 * 19 17 7 43 43 H 1.08998 * 109.46491 * 299.99793 * 19 17 7 44 44 H 1.09002 * 109.52401 * 57.68445 * 22 20 19 45 45 H 1.09004 * 109.52068 * 297.56090 * 22 20 19 46 46 H 1.08995 * 109.54674 * 62.85906 * 23 22 20 47 47 H 1.08999 * 109.54128 * 183.11874 * 23 22 20 48 48 H 1.08995 * 109.52612 * 176.89131 * 24 23 22 49 49 H 1.09004 * 109.52214 * 297.01676 * 24 23 22 50 50 H 1.08997 * 109.47580 * 62.37620 * 25 24 23 51 51 H 1.08994 * 109.47934 * 182.41016 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5044 -0.9553 0.9705 6 6 4.0525 -1.7536 2.1550 7 7 5.4975 -1.9344 1.9953 8 6 6.0148 -3.1051 1.2824 9 6 6.2367 -4.2307 2.2596 10 1 6.0142 -4.0884 3.3068 11 6 6.7227 -5.4425 1.8165 12 7 6.9158 -6.4249 2.6693 13 14 7.1069 -5.6888 0.0051 14 1 8.5180 -5.3083 -0.2578 15 1 6.9036 -7.1152 -0.3545 16 1 6.2044 -4.8388 -0.8124 17 6 6.3510 -1.0238 2.5041 18 8 5.9227 -0.0545 3.0937 19 6 7.8374 -1.2096 2.3392 20 6 8.5737 -0.0441 3.0028 21 1 8.2587 0.0402 4.0429 22 6 10.0829 -0.2945 2.9451 23 6 10.8163 0.9028 3.5574 24 6 10.4103 2.1747 2.8066 25 6 8.8887 2.3313 2.8695 26 8 8.2683 1.1708 2.3123 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0707 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 1.5088 -1.7406 1.1757 34 1 1.7974 -0.2247 2.0629 35 1 3.9908 0.0193 0.9324 36 1 3.7023 -1.4967 0.0453 37 1 3.5660 -2.7283 2.1927 38 1 3.8546 -1.2126 3.0804 39 1 5.2948 -3.4173 0.5260 40 1 6.9592 -2.8499 0.8018 41 1 7.2582 -7.2774 2.3576 42 1 8.0845 -1.2381 1.2780 43 1 8.1407 -2.1457 2.8082 44 1 10.3921 -0.4192 1.9073 45 1 10.3243 -1.1963 3.5079 46 1 10.5451 0.9977 4.6088 47 1 11.8926 0.7551 3.4691 48 1 10.8850 3.0390 3.2710 49 1 10.7271 2.1004 1.7662 50 1 8.5778 2.4466 3.9078 51 1 8.5901 3.2117 2.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087192578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:36 Heat of formation + Delta-G solvation = -112.454834 kcal Electronic energy + Delta-G solvation = -27413.398031 eV Core-core repulsion = 23732.467698 eV Total energy + Delta-G solvation = -3680.930334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10589 -39.90482 -38.62461 -36.84295 -34.77176 -34.48111 -33.93189 -32.86973 -29.79522 -29.43160 -28.50497 -27.03765 -25.29258 -24.45362 -24.08035 -22.91580 -21.78593 -21.14572 -19.81252 -19.04826 -17.94127 -17.43384 -17.36523 -16.70042 -16.52425 -16.36223 -16.06148 -15.81704 -15.43302 -15.36924 -15.26766 -14.94111 -14.79285 -14.38975 -13.92205 -13.72334 -13.54106 -13.48573 -13.29637 -13.23162 -12.92126 -12.90811 -12.82325 -12.61425 -12.47231 -12.37354 -12.22185 -12.14361 -11.97571 -11.92676 -11.68720 -11.61265 -11.51250 -11.22180 -10.78832 -10.63189 -10.26927 -9.40572 -9.34527 -8.28105 -6.35426 1.42006 1.44477 1.53675 1.81107 2.26672 2.36558 2.88406 3.02786 3.06451 3.62337 3.81922 3.92991 3.96251 4.02283 4.09606 4.18850 4.20813 4.22182 4.31455 4.40424 4.44556 4.49551 4.50436 4.61378 4.64567 4.65173 4.71177 4.75537 4.76642 4.79178 4.84542 4.91554 4.92608 4.98292 4.99552 5.00362 5.09380 5.13462 5.15106 5.22044 5.26785 5.40911 5.46764 5.74490 6.02299 6.10051 6.20995 6.38897 6.64092 6.72132 7.27133 7.40346 8.88025 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.005362 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.706237 B = 5221.161422 C = 8467.960718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.064 3.936 5 C -0.112 4.112 6 C 0.122 3.878 7 N -0.599 5.599 8 C 0.218 3.782 9 C -0.539 4.539 10 H 0.030 0.970 11 C 0.023 3.977 12 N -0.941 5.941 13 Si 0.937 3.063 14 H -0.259 1.259 15 H -0.286 1.286 16 H -0.242 1.242 17 C 0.515 3.485 18 O -0.583 6.583 19 C -0.129 4.129 20 C 0.113 3.887 21 H 0.043 0.957 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.149 4.149 25 C 0.054 3.946 26 O -0.393 6.393 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.268 0.732 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 15.480 -4.990 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.286 5.286 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.151 4.151 6 C -0.002 4.002 7 N -0.329 5.329 8 C 0.096 3.904 9 C -0.578 4.578 10 H 0.049 0.951 11 C -0.176 4.176 12 N -0.581 5.581 13 Si 0.760 3.240 14 H -0.183 1.183 15 H -0.212 1.212 16 H -0.165 1.165 17 C 0.305 3.695 18 O -0.464 6.464 19 C -0.169 4.169 20 C 0.055 3.945 21 H 0.061 0.939 22 C -0.187 4.187 23 C -0.158 4.158 24 C -0.186 4.186 25 C -0.022 4.022 26 O -0.312 6.312 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.134 15.566 -5.269 16.434 hybrid contribution -0.041 -0.438 0.778 0.893 sum -0.175 15.129 -4.491 15.782 Atomic orbital electron populations 1.22436 0.85906 1.02934 1.01054 1.61980 1.09160 1.14360 1.43077 1.22423 1.00660 0.88521 1.00871 1.21977 0.94336 0.98749 0.91341 1.21749 0.95300 0.99802 0.98267 1.21276 0.80318 1.00304 0.98306 1.47964 1.06309 1.23237 1.55346 1.19634 0.95783 0.82843 0.92141 1.21496 1.44342 0.97089 0.94853 0.95119 1.25736 0.94378 0.95060 1.02458 1.70052 1.46384 1.04526 1.37123 0.85864 0.80337 0.78064 0.79758 1.18321 1.21197 1.16510 1.20814 0.89806 0.81412 0.77517 1.90571 1.79989 1.31449 1.44410 1.21749 0.91060 0.99662 1.04393 1.21721 0.94134 0.83938 0.94686 0.93920 1.22210 0.93657 0.99911 1.02885 1.21601 1.00949 0.93812 0.99408 1.22168 0.95658 0.99000 1.01823 1.22699 0.92987 0.88074 0.98468 1.87951 1.72112 1.15552 1.55624 0.95441 0.90119 0.90810 0.92343 0.89890 0.95733 0.89798 0.94934 0.93045 0.91521 0.90496 0.92052 0.93870 0.93555 0.92266 0.87641 0.87256 0.90520 0.90299 0.91917 0.89586 0.88904 0.90986 0.94026 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.57 127.69 1.22 1.68 16 2 N -0.56 -13.85 5.02 -948.83 -4.76 -18.61 16 3 C 0.02 0.54 9.32 127.69 1.19 1.73 16 4 C 0.06 1.73 4.96 86.30 0.43 2.16 16 5 C -0.11 -3.60 5.46 30.59 0.17 -3.43 16 6 C 0.12 4.54 5.41 86.38 0.47 5.01 16 7 N -0.60 -25.07 2.46 -826.15 -2.03 -27.10 16 8 C 0.22 9.49 4.03 85.63 0.35 9.84 16 9 C -0.54 -28.58 9.84 25.60 0.25 -28.33 16 10 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 11 C 0.02 1.22 5.47 84.66 0.46 1.68 16 12 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 13 Si 0.94 39.69 27.47 68.60 1.88 41.57 16 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 15 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 17 C 0.51 21.86 7.55 87.66 0.66 22.52 16 18 O -0.58 -27.03 15.00 10.60 0.16 -26.87 16 19 C -0.13 -4.71 3.97 29.85 0.12 -4.60 16 20 C 0.11 3.69 2.19 30.62 0.07 3.76 16 21 H 0.04 1.53 7.96 -2.39 -0.02 1.51 16 22 C -0.15 -3.75 5.41 30.68 0.17 -3.59 16 23 C -0.12 -2.42 6.03 30.71 0.19 -2.24 16 24 C -0.15 -2.85 6.14 30.69 0.19 -2.66 16 25 C 0.05 1.35 6.84 72.01 0.49 1.84 16 26 O -0.39 -13.17 9.66 -135.37 -1.31 -14.48 16 27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 29 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 30 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 31 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 32 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 34 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.05 1.79 6.55 -2.39 -0.02 1.77 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.85 8.07 -2.38 -0.02 2.83 16 38 H 0.06 2.40 7.42 -2.39 -0.02 2.38 16 39 H 0.04 1.82 7.13 -2.39 -0.02 1.81 16 40 H 0.05 1.89 5.87 -2.39 -0.01 1.87 16 41 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.11 3.55 7.40 -2.39 -0.02 3.53 16 43 H 0.11 4.18 8.00 -2.39 -0.02 4.16 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -66.85 397.86 1.46 -65.39 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.81 Total: 29.74 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.42 Total: 5.39 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -6.49 Total: -100.73 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.15 Total: -41.35 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 1.88 Total: 41.57 kcal Total: -66.85 1.46 -65.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087192578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.066 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds