Wall clock time and date at job start Tue Mar 31 2020 11:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34520 * 124.45776 * 269.70092 * 11 10 9 13 13 O 1.21454 * 125.71053 * 359.97438 * 12 11 10 14 14 C 1.47765 * 108.57839 * 179.84432 * 12 11 10 15 15 C 1.38569 * 134.26757 * 180.11764 * 14 12 11 16 16 C 1.38698 * 119.72754 * 180.31654 * 15 14 12 17 17 Cl 1.73604 * 119.79159 * 180.02562 * 16 15 14 18 18 C 1.38500 * 120.42006 * 0.02562 * 16 15 14 19 19 Cl 1.73602 * 119.79296 * 180.02562 * 18 16 15 20 20 C 1.38703 * 120.41597 * 359.97438 * 18 16 15 21 21 C 1.38563 * 119.72863 * 0.02562 * 20 18 16 22 22 C 1.34527 * 124.45385 * 89.99754 * 11 10 9 23 23 O 1.21449 * 125.70798 * 0.02562 * 22 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.08003 * 120.13678 * 0.29207 * 15 14 12 30 30 H 1.08002 * 120.13407 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1374 -5.5926 1.1106 13 8 1.3494 -5.2386 2.2529 14 6 0.4216 -6.8206 0.7070 15 6 -0.1792 -7.8611 1.3972 16 6 -0.7775 -8.8971 0.6955 17 17 -1.5312 -10.2013 1.5586 18 6 -0.7775 -8.8978 -0.6895 19 17 -1.5317 -10.2025 -1.5514 20 6 -0.1796 -7.8622 -1.3923 21 6 0.4215 -6.8213 -0.7030 22 6 1.1316 -5.5903 -1.1078 23 8 1.3377 -5.2339 -2.2504 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 -0.1811 -7.8656 2.4773 30 1 -0.1826 -7.8671 -2.4723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098070119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:53 Heat of formation + Delta-G solvation = -35.752585 kcal Electronic energy + Delta-G solvation = -20309.002035 eV Core-core repulsion = 16735.931955 eV Total energy + Delta-G solvation = -3573.070080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.006 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.32029 -39.14012 -38.49233 -37.08252 -36.95940 -35.76507 -33.71383 -32.03378 -31.62248 -29.60478 -25.82959 -25.24515 -23.63274 -22.40229 -21.48046 -19.85485 -18.12449 -17.47445 -17.11462 -16.54284 -16.13594 -15.49403 -15.46167 -14.65074 -14.56085 -14.54191 -14.36136 -13.86826 -13.68960 -13.09556 -12.64228 -12.48761 -12.38404 -11.90221 -11.76237 -11.59977 -11.44629 -11.00118 -10.95442 -10.54920 -10.40157 -10.17974 -10.06184 -9.64250 -9.39618 -9.34862 -9.02216 -8.45260 -6.09972 -4.14741 -0.39133 0.33311 1.22732 1.53208 1.60599 2.51588 3.03021 3.05550 3.30252 3.34511 3.36868 3.49171 4.03093 4.11672 4.33585 4.39557 4.51271 5.10661 5.11145 5.21040 5.26722 5.37990 5.66833 5.77151 5.79163 6.14859 6.50813 6.84375 7.28136 7.47472 7.56717 7.75213 7.87508 8.21424 8.89841 9.49969 11.01565 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.003102 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.254029 B = 9024.609672 C = 9490.197676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.112 3.888 11 N -0.563 5.563 12 C 0.573 3.427 13 O -0.450 6.450 14 C -0.116 4.116 15 C -0.029 4.029 16 C -0.017 4.017 17 Cl -0.029 7.029 18 C -0.017 4.017 19 Cl -0.029 7.029 20 C -0.029 4.029 21 C -0.117 4.117 22 C 0.573 3.427 23 O -0.450 6.450 24 H 0.264 0.736 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.162 0.838 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -22.501 0.007 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.006 4.006 11 N -0.304 5.304 12 C 0.360 3.640 13 O -0.320 6.320 14 C -0.121 4.121 15 C -0.049 4.049 16 C -0.045 4.045 17 Cl 0.000 7.000 18 C -0.045 4.045 19 Cl 0.000 7.000 20 C -0.049 4.049 21 C -0.121 4.121 22 C 0.360 3.640 23 O -0.320 6.320 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.180 0.820 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.577 -22.124 0.006 22.273 hybrid contribution 0.159 0.726 -0.001 0.743 sum -2.418 -21.398 0.006 21.534 Atomic orbital electron populations 1.69955 1.06168 1.27087 1.49698 1.24995 0.94890 0.99445 0.94803 0.86547 0.79511 0.82571 0.78745 1.20056 1.21186 1.20049 1.20931 0.93082 0.90184 1.52245 0.92178 1.19435 0.94242 0.90741 0.98260 1.22376 0.95792 0.78889 1.03513 1.46910 1.52366 1.24164 1.06949 1.18055 0.78244 0.82843 0.84863 1.90827 1.51906 1.70052 1.19261 1.20766 1.00471 0.96537 0.94300 1.20517 0.93393 0.89436 1.01544 1.20817 1.00288 0.92894 0.90504 1.98423 1.79589 1.46007 1.75959 1.20818 1.00286 0.92891 0.90509 1.98423 1.79559 1.45971 1.76022 1.20516 0.93370 0.89459 1.01543 1.20765 1.00507 0.96506 0.94302 1.18056 0.78209 0.82872 0.84869 1.90825 1.51911 1.70057 1.19234 0.92683 0.95786 0.95792 0.89366 0.89362 0.82032 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 10 C 0.11 2.27 5.68 -4.04 -0.02 2.25 16 11 N -0.56 -10.07 2.62 -117.66 -0.31 -10.38 16 12 C 0.57 9.50 8.02 -12.48 -0.10 9.40 16 13 O -0.45 -8.51 17.67 5.41 0.10 -8.42 16 14 C -0.12 -1.50 6.40 -104.84 -0.67 -2.17 16 15 C -0.03 -0.30 9.87 -39.29 -0.39 -0.69 16 16 C -0.02 -0.16 6.33 -39.31 -0.25 -0.41 16 17 Cl -0.03 -0.24 27.91 -51.86 -1.45 -1.69 16 18 C -0.02 -0.16 6.33 -39.31 -0.25 -0.41 16 19 Cl -0.03 -0.24 27.91 -51.86 -1.45 -1.69 16 20 C -0.03 -0.30 9.87 -39.29 -0.39 -0.69 16 21 C -0.12 -1.50 6.40 -104.84 -0.67 -2.17 16 22 C 0.57 9.51 8.02 -12.48 -0.10 9.41 16 23 O -0.45 -8.51 17.68 5.41 0.10 -8.42 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 1.72 7.97 -51.93 -0.41 1.31 16 28 H 0.09 1.72 7.96 -51.93 -0.41 1.31 16 29 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -31.05 309.10 -8.09 -39.14 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -2.06 Total: -5.15 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.40 Total: 1.43 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.43 Total: -36.20 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.19 Total: -16.83 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -2.89 Total: -3.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.05 -8.09 -39.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098070119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.391 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds