Wall clock time and date at job start Tue Mar 31 2020 11:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34520 * 124.45776 * 269.70092 * 11 10 9 13 13 O 1.21454 * 125.71053 * 359.97438 * 12 11 10 14 14 C 1.47765 * 108.57839 * 179.84432 * 12 11 10 15 15 C 1.38569 * 134.26757 * 180.11764 * 14 12 11 16 16 C 1.38698 * 119.72754 * 180.31654 * 15 14 12 17 17 Cl 1.73604 * 119.79159 * 180.02562 * 16 15 14 18 18 C 1.38500 * 120.42006 * 0.02562 * 16 15 14 19 19 Cl 1.73602 * 119.79296 * 180.02562 * 18 16 15 20 20 C 1.38703 * 120.41597 * 359.97438 * 18 16 15 21 21 C 1.38563 * 119.72863 * 0.02562 * 20 18 16 22 22 C 1.34527 * 124.45385 * 89.99754 * 11 10 9 23 23 O 1.21449 * 125.70798 * 0.02562 * 22 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.08003 * 120.13678 * 0.29207 * 15 14 12 30 30 H 1.08002 * 120.13407 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.1374 -5.5926 1.1106 13 8 1.3494 -5.2386 2.2529 14 6 0.4216 -6.8206 0.7070 15 6 -0.1792 -7.8611 1.3972 16 6 -0.7775 -8.8971 0.6955 17 17 -1.5312 -10.2013 1.5586 18 6 -0.7775 -8.8978 -0.6895 19 17 -1.5317 -10.2025 -1.5514 20 6 -0.1796 -7.8622 -1.3923 21 6 0.4215 -6.8213 -0.7030 22 6 1.1316 -5.5903 -1.1078 23 8 1.3377 -5.2339 -2.2504 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 -0.1811 -7.8656 2.4773 30 1 -0.1826 -7.8671 -2.4723 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098070119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:53 Heat of formation + Delta-G solvation = -53.737810 kcal Electronic energy + Delta-G solvation = -20309.781933 eV Core-core repulsion = 16735.931955 eV Total energy + Delta-G solvation = -3573.849978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.006 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.56318 -40.11684 -39.87474 -37.82549 -37.81450 -37.21059 -35.59194 -33.61249 -32.51131 -31.17868 -27.51889 -26.43106 -25.04456 -23.53006 -23.13624 -21.14047 -19.25009 -18.96593 -18.46519 -17.75999 -17.71778 -16.71475 -16.58436 -16.48030 -15.98641 -15.44004 -15.29702 -15.27746 -15.00155 -14.57445 -14.42332 -13.76788 -13.46674 -13.09405 -12.87312 -12.85348 -12.66657 -12.53524 -12.20416 -12.13148 -12.11793 -11.83273 -11.57297 -11.41337 -10.79249 -10.62531 -10.49570 -10.16406 -8.26670 -6.40024 -1.43268 -0.53235 0.45023 0.51131 0.72629 1.18889 1.41307 1.44564 1.52403 1.73822 2.04615 2.38976 2.42487 2.94915 3.07977 3.17508 3.42826 3.61697 4.06068 4.17444 4.28131 4.28443 4.38350 4.44260 4.44744 4.65841 4.88376 5.25466 5.32257 5.63457 5.69177 5.98157 6.04248 6.42727 6.74593 7.30202 8.85886 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.003102 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.254029 B = 9024.609672 C = 9490.197676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.021 3.979 10 C 0.126 3.874 11 N -0.576 5.576 12 C 0.572 3.428 13 O -0.482 6.482 14 C -0.123 4.123 15 C -0.015 4.015 16 C -0.009 4.009 17 Cl -0.011 7.011 18 C -0.009 4.009 19 Cl -0.011 7.011 20 C -0.015 4.015 21 C -0.123 4.123 22 C 0.572 3.428 23 O -0.482 6.482 24 H 0.266 0.734 25 H -0.008 1.008 26 H -0.008 1.008 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.182 0.818 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -24.196 0.009 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.091 0.909 9 C -0.017 4.017 10 C 0.007 3.993 11 N -0.317 5.317 12 C 0.362 3.638 13 O -0.354 6.354 14 C -0.128 4.128 15 C -0.034 4.034 16 C -0.037 4.037 17 Cl 0.019 6.981 18 C -0.037 4.037 19 Cl 0.019 6.981 20 C -0.034 4.034 21 C -0.128 4.128 22 C 0.362 3.638 23 O -0.354 6.354 24 H 0.074 0.926 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.199 0.801 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.504 -23.864 0.009 23.995 hybrid contribution 0.027 1.080 -0.001 1.080 sum -2.477 -22.784 0.007 22.918 Atomic orbital electron populations 1.70103 1.08056 1.28185 1.50785 1.26029 0.95791 1.03695 0.94152 0.85377 0.78166 0.77352 0.79429 1.18846 1.20898 1.18832 1.21435 0.93994 0.91198 1.51882 0.90861 1.19216 0.94471 0.92896 0.95113 1.21923 0.94546 0.78620 1.04213 1.46892 1.52765 1.23662 1.08332 1.18537 0.77610 0.83664 0.83989 1.90798 1.53271 1.71162 1.20190 1.20379 1.02024 0.96095 0.94257 1.20681 0.91901 0.88314 1.02483 1.20859 0.99383 0.92854 0.90633 1.98442 1.79083 1.44980 1.75624 1.20860 0.99381 0.92852 0.90637 1.98442 1.79052 1.44943 1.75688 1.20681 0.91877 0.88336 1.02484 1.20377 1.02070 0.96051 0.94254 1.18540 0.77564 0.83704 0.83997 1.90797 1.53284 1.71165 1.20169 0.92557 0.98935 0.98945 0.88622 0.88623 0.80095 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.12 5.30 29.85 0.16 1.28 16 10 C 0.13 5.31 5.68 86.38 0.49 5.80 16 11 N -0.58 -21.35 2.62 -763.07 -2.00 -23.35 16 12 C 0.57 19.43 8.02 86.80 0.70 20.12 16 13 O -0.48 -18.72 17.67 -3.57 -0.06 -18.78 16 14 C -0.12 -3.09 6.40 -20.00 -0.13 -3.22 16 15 C -0.01 -0.26 9.87 22.46 0.22 -0.04 16 16 C -0.01 -0.14 6.33 22.44 0.14 0.00 16 17 Cl -0.01 -0.15 27.91 -2.72 -0.08 -0.22 16 18 C -0.01 -0.14 6.33 22.44 0.14 0.00 16 19 Cl -0.01 -0.15 27.91 -2.72 -0.08 -0.22 16 20 C -0.01 -0.26 9.87 22.46 0.22 -0.04 16 21 C -0.12 -3.09 6.40 -20.00 -0.13 -3.22 16 22 C 0.57 19.44 8.02 86.80 0.70 20.13 16 23 O -0.48 -18.74 17.68 -3.56 -0.06 -18.80 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.10 3.85 7.97 -2.39 -0.02 3.83 16 28 H 0.10 3.85 7.96 -2.39 -0.02 3.83 16 29 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -69.06 309.10 4.44 -64.62 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: 1.20 Total: -3.07 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 3.21 Total: 10.68 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.72 Total: -80.22 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.13 Total: -37.58 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.15 Total: -0.45 kcal Total: -69.06 4.44 -64.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098070119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.880 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds