Wall clock time and date at job start Tue Mar 31 2020 11:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46755 * 2 1 4 4 O 1.42894 * 109.47167 * 120.00076 * 2 1 3 5 5 C 1.35898 * 117.00015 * 275.07301 * 4 2 1 6 6 C 1.38766 * 120.04877 * 185.49128 * 5 4 2 7 7 C 1.38125 * 119.96203 * 179.97438 * 6 5 4 8 8 C 1.38270 * 120.06952 * 0.02562 * 7 6 5 9 9 C 1.38338 * 120.09707 * 359.97438 * 8 7 6 10 10 Br 1.89101 * 119.98155 * 180.27931 * 9 8 7 11 11 C 1.38254 * 120.03910 * 0.02562 * 9 8 7 12 12 C 1.50699 * 109.46862 * 240.00602 * 2 1 3 13 13 O 1.21299 * 119.99432 * 244.99631 * 12 2 1 14 14 N 1.34776 * 120.00423 * 64.99594 * 12 2 1 15 15 C 1.37103 * 119.99887 * 180.02562 * 14 12 2 16 16 H 1.07997 * 120.00113 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99570 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00268 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99855 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46830 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46944 * 120.00322 * 19 17 15 22 22 H 1.48495 * 109.47178 * 239.99970 * 19 17 15 23 23 H 1.08997 * 109.47731 * 60.00117 * 1 2 3 24 24 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47264 * 299.99527 * 1 2 3 26 26 H 1.08003 * 120.01758 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.96800 * 180.02562 * 7 6 5 28 28 H 1.07996 * 119.95086 * 180.02562 * 8 7 6 29 29 H 1.08002 * 120.03376 * 179.97438 * 11 9 8 30 30 H 0.97000 * 119.99527 * 359.97438 * 14 12 2 31 31 H 0.97004 * 120.00084 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1111 0.0622 2.3044 6 6 2.6729 -0.4961 3.4438 7 6 2.7789 0.2535 4.5991 8 6 2.3253 1.5595 4.6215 9 6 1.7648 2.1188 3.4872 10 35 1.1527 3.9077 3.5193 11 6 1.6565 1.3723 2.3286 12 6 2.0323 -0.7103 -1.2305 13 8 2.6530 -1.7467 -1.1216 14 7 1.7918 -0.1940 -2.4521 15 6 2.2483 -0.8406 -3.5715 16 1 2.8010 -1.7634 -3.4745 17 6 1.9999 -0.3086 -4.8309 18 7 1.3278 0.8145 -4.9488 19 14 2.6225 -1.1891 -6.3562 20 1 3.3454 -2.4227 -5.9551 21 1 1.4724 -1.5497 -7.2237 22 1 3.5441 -0.2952 -7.1023 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 3.0278 -1.5160 3.4270 27 1 3.2166 -0.1808 5.4858 28 1 2.4096 2.1441 5.5257 29 1 1.2185 1.8089 1.4432 30 1 1.2950 0.6346 -2.5391 31 1 1.1547 1.1861 -5.8280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173373797.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:40 Heat of formation + Delta-G solvation = -48.624667 kcal Electronic energy + Delta-G solvation = -17622.781870 eV Core-core repulsion = 14529.849859 eV Total energy + Delta-G solvation = -3092.932011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35497 -38.47658 -37.04627 -34.03536 -32.65421 -31.82582 -30.80541 -30.16993 -29.00502 -25.44077 -24.01697 -22.56839 -22.00121 -19.39956 -18.29310 -17.99054 -16.36001 -16.13120 -15.47324 -15.30279 -14.70830 -14.38155 -14.01340 -13.73939 -13.54285 -13.28431 -12.75777 -12.70592 -12.18110 -11.78829 -11.68602 -11.55787 -11.28432 -11.11238 -10.80659 -10.52975 -10.43262 -10.39882 -10.31620 -9.63115 -8.97981 -8.53148 -8.18678 -8.09338 -6.51868 -3.93581 0.97996 1.25903 1.46931 3.10482 3.12562 3.23632 3.32244 3.53761 3.71180 4.12684 4.65036 4.77733 4.83864 5.00014 5.08594 5.11626 5.24334 5.38387 5.46006 5.54157 5.73138 5.85659 5.99723 6.07344 6.20582 6.22771 6.34254 6.54641 7.45836 7.46610 7.93171 8.47170 9.06025 9.37950 9.88070 10.65412 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.003443 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.691394 B = 8131.101223 C = 9074.186000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.275 6.275 5 C 0.149 3.851 6 C -0.139 4.139 7 C -0.075 4.075 8 C -0.140 4.140 9 C -0.049 4.049 10 Br -0.054 7.054 11 C -0.189 4.189 12 C 0.443 3.557 13 O -0.573 6.573 14 N -0.552 5.552 15 C -0.302 4.302 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.898 5.898 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.142 0.858 30 H 0.394 0.606 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 7.148 18.331 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.102 0.898 4 O -0.186 6.186 5 C 0.101 3.899 6 C -0.158 4.158 7 C -0.094 4.094 8 C -0.160 4.160 9 C -0.128 4.128 10 Br 0.032 6.968 11 C -0.210 4.210 12 C 0.228 3.772 13 O -0.457 6.457 14 N -0.189 5.189 15 C -0.431 4.431 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.227 0.773 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.904 7.016 18.182 19.581 hybrid contribution -0.034 0.068 -0.954 0.957 sum -1.939 7.084 17.228 18.728 Atomic orbital electron populations 1.22330 0.93515 1.04101 1.03140 1.22302 0.95131 0.96655 0.84645 0.89755 1.86281 1.80120 1.36654 1.15561 1.19116 0.93522 0.89605 0.87670 1.20646 1.02414 1.01757 0.91026 1.20937 0.97831 0.93173 0.97465 1.20951 1.01557 0.96123 0.97332 1.21505 1.03302 0.91515 0.96511 1.96712 1.87933 1.13039 1.99140 1.21320 1.06359 0.94415 0.98880 1.19265 0.86500 0.87852 0.83615 1.90565 1.44483 1.24793 1.85854 1.41730 1.49226 1.24028 1.03879 1.19784 1.32772 1.07656 0.82893 0.87601 1.25292 0.96822 0.96227 0.99332 1.69617 1.39691 1.19149 1.25369 0.85759 0.78491 0.79372 0.80513 1.19085 1.20605 1.20607 0.89949 0.90825 0.91798 0.84367 0.84556 0.85124 0.84054 0.77265 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 9.12 37.16 0.34 -2.33 16 2 C 0.07 1.33 2.64 -27.88 -0.07 1.26 16 3 H 0.08 1.39 6.32 -51.93 -0.33 1.06 16 4 O -0.27 -5.14 9.34 -39.28 -0.37 -5.50 16 5 C 0.15 2.28 6.60 -39.22 -0.26 2.02 16 6 C -0.14 -1.80 9.99 -39.43 -0.39 -2.19 16 7 C -0.08 -0.78 10.04 -39.61 -0.40 -1.17 16 8 C -0.14 -1.49 9.78 -39.53 -0.39 -1.88 16 9 C -0.05 -0.60 6.22 -39.54 -0.25 -0.85 16 10 Br -0.05 -0.59 33.70 -68.01 -2.29 -2.89 16 11 C -0.19 -2.61 7.98 -39.41 -0.31 -2.93 16 12 C 0.44 10.62 7.13 -10.99 -0.08 10.55 16 13 O -0.57 -16.11 16.08 -14.32 -0.23 -16.34 16 14 N -0.55 -13.72 5.25 -10.96 -0.06 -13.78 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 3.05 7.16 -52.49 -0.38 2.68 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -23.72 13.05 55.50 0.72 -23.00 16 19 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.83 6.90 -51.92 -0.36 0.47 16 26 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.14 1.89 5.43 -52.49 -0.28 1.60 16 30 H 0.39 9.21 7.68 -40.82 -0.31 8.89 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -30.77 295.01 -7.75 -38.52 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -2.90 Total: 8.36 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.05 Total: -5.37 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.67 Total: -36.78 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.60 Total: -21.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.77 -7.75 -38.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173373797.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.105 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds