Wall clock time and date at job start Tue Mar 31 2020 10:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.46795 * 2 1 4 4 C 1.42906 * 113.99702 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84801 * 338.30172 * 4 3 2 6 6 C 1.53771 * 113.61488 * 109.50606 * 4 3 2 7 7 C 1.53778 * 87.08633 * 89.11546 * 6 4 3 8 8 H 1.08998 * 113.61653 * 140.06230 * 7 6 4 9 9 N 1.46498 * 113.61344 * 270.88244 * 7 6 4 10 10 C 1.46504 * 119.99922 * 0.05031 * 9 7 6 11 11 C 1.34778 * 120.00468 * 180.02562 * 9 7 6 12 12 O 1.21593 * 119.99271 * 359.97438 * 11 9 7 13 13 N 1.34771 * 120.00506 * 180.02562 * 11 9 7 14 14 C 1.46497 * 120.00206 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47104 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47237 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47297 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47095 * 90.00325 * 21 19 17 23 23 H 1.48504 * 109.47407 * 210.00037 * 21 19 17 24 24 H 1.48499 * 109.47086 * 330.00329 * 21 19 17 25 25 C 1.53784 * 87.08108 * 25.42943 * 7 6 4 26 26 C 1.53001 * 113.61138 * 89.11960 * 25 7 6 27 27 C 1.53001 * 113.61669 * 220.02247 * 25 7 6 28 28 H 1.09002 * 109.47011 * 60.00614 * 1 2 3 29 29 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47267 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47267 * 239.99865 * 2 1 3 32 32 H 1.08999 * 109.46662 * 119.99768 * 2 1 3 33 33 H 1.08996 * 113.61690 * 334.56168 * 6 4 3 34 34 H 1.09004 * 113.68861 * 203.67327 * 6 4 3 35 35 H 1.09002 * 109.46960 * 264.46903 * 10 9 7 36 36 H 1.09001 * 109.46970 * 24.46759 * 10 9 7 37 37 H 1.08998 * 109.47157 * 144.46846 * 10 9 7 38 38 H 0.97004 * 119.99593 * 359.97438 * 13 11 9 39 39 H 1.09004 * 109.46943 * 299.99585 * 14 13 11 40 40 H 1.08996 * 109.47493 * 59.99666 * 14 13 11 41 41 H 1.08995 * 109.47485 * 300.00153 * 15 14 13 42 42 H 1.09010 * 109.47201 * 60.00114 * 15 14 13 43 43 H 1.09004 * 109.47062 * 300.00342 * 16 15 14 44 44 H 1.09003 * 109.47390 * 59.99965 * 16 15 14 45 45 H 0.97002 * 120.00280 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.47355 * 59.99999 * 26 25 7 47 47 H 1.09003 * 109.46829 * 180.02562 * 26 25 7 48 48 H 1.09002 * 109.47193 * 299.99621 * 26 25 7 49 49 H 1.08994 * 109.46928 * 59.99849 * 27 25 7 50 50 H 1.09000 * 109.47049 * 179.97438 * 27 25 7 51 51 H 1.09005 * 109.46843 * 300.00029 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9266 0.5631 0.3704 6 6 4.0073 1.9779 -1.3288 7 6 3.8420 3.3959 -0.7572 8 1 4.6699 4.0629 -0.9976 9 7 2.5326 3.9915 -1.0347 10 6 1.5306 3.2376 -1.7923 11 6 2.2495 5.2329 -0.5927 12 8 3.0809 5.8583 0.0368 13 7 1.0448 5.7807 -0.8476 14 6 0.7374 7.1302 -0.3676 15 6 -0.6835 7.5100 -0.7889 16 6 -1.0049 8.9191 -0.2871 17 6 -2.4047 9.2930 -0.7015 18 1 -3.0053 8.5951 -1.2660 19 6 -2.9191 10.5255 -0.3591 20 7 -2.1879 11.3752 0.3287 21 14 -4.6540 10.9892 -0.8735 22 1 -5.6112 10.5733 0.1828 23 1 -4.7371 12.4594 -1.0656 24 1 -4.9928 10.3037 -2.1464 25 6 3.9460 2.7602 0.6392 26 6 5.3806 2.6598 1.1614 27 6 2.9811 3.3646 1.6613 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3694 1.7769 -2.1895 34 1 5.0460 1.6930 -1.4962 35 1 1.5825 3.5194 -2.8440 36 1 1.7269 2.1701 -1.6921 37 1 0.5371 3.4623 -1.4045 38 1 0.3815 5.2815 -1.3495 39 1 0.8133 7.1552 0.7195 40 1 1.4451 7.8389 -0.7976 41 1 -0.7592 7.4850 -1.8759 42 1 -1.3916 6.8014 -0.3591 43 1 -0.9294 8.9437 0.8001 44 1 -0.2969 9.6280 -0.7165 45 1 -2.5499 12.2422 0.5699 46 1 5.8149 3.6575 1.2251 47 1 5.3760 2.2014 2.1504 48 1 5.9731 2.0484 0.4808 49 1 1.9558 3.2286 1.3175 50 1 3.1110 2.8667 2.6222 51 1 3.1890 4.4289 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178658540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:49 Heat of formation + Delta-G solvation = -54.797033 kcal Electronic energy + Delta-G solvation = -27543.992389 eV Core-core repulsion = 23865.562286 eV Total energy + Delta-G solvation = -3678.430104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.28219 -39.10859 -36.95845 -35.20222 -34.54545 -33.09492 -31.44341 -31.04066 -30.32883 -27.44918 -26.98227 -26.62860 -24.55422 -23.28724 -22.88407 -22.25511 -20.52373 -20.02397 -18.41658 -17.66456 -16.99896 -16.49250 -16.18138 -15.93475 -15.72557 -15.24667 -14.57527 -14.51519 -14.29849 -13.94958 -13.73675 -13.43195 -13.27988 -13.03378 -12.93924 -12.78692 -12.39417 -12.24887 -12.17494 -12.08573 -11.90999 -11.72332 -11.58449 -11.44864 -11.27440 -10.97124 -10.86563 -10.65448 -10.63488 -10.55056 -10.29266 -9.87676 -9.79104 -9.55150 -9.36238 -9.07546 -8.68729 -8.33268 -8.24066 -5.97897 -4.00735 2.81084 3.23332 3.33260 3.39441 3.42433 3.49990 4.18610 4.23594 4.28204 4.47401 4.51577 4.70681 4.73494 4.90563 5.02261 5.03601 5.06306 5.22920 5.27126 5.36779 5.37757 5.41068 5.50623 5.55089 5.58833 5.62514 5.71598 5.81301 5.83655 5.85654 5.89808 5.90617 5.90814 6.08893 6.27280 6.28711 6.52208 6.63106 6.69834 6.70794 6.93061 6.98772 7.11395 7.21518 7.68842 7.82497 8.01581 8.25944 8.42814 8.93200 9.06073 9.63103 11.13451 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.002669 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.604968 B =10488.565305 C =11283.284100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.351 6.351 4 C 0.071 3.929 5 H 0.072 0.928 6 C -0.170 4.170 7 C 0.162 3.838 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.070 3.930 11 C 0.706 3.294 12 O -0.591 6.591 13 N -0.742 5.742 14 C 0.136 3.864 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.093 4.093 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.537 -27.193 -2.678 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.013 3.987 5 H 0.090 0.910 6 C -0.208 4.208 7 C 0.056 3.944 8 H 0.104 0.896 9 N -0.347 5.347 10 C -0.073 4.073 11 C 0.408 3.592 12 O -0.469 6.469 13 N -0.397 5.397 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.095 4.095 26 C -0.181 4.181 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.990 -26.359 -2.145 29.464 hybrid contribution -1.235 -0.189 -0.524 1.355 sum 11.755 -26.548 -2.669 29.156 Atomic orbital electron populations 1.21753 0.93540 1.02224 1.03414 1.22537 0.95692 0.84150 0.99916 1.87999 1.19492 1.25652 1.93812 1.23172 0.81743 0.97828 0.95972 0.90984 1.23864 1.02298 0.96112 0.98537 1.21591 0.85233 0.93003 0.94525 0.89563 1.46478 1.14897 1.14633 1.58646 1.22014 0.91441 0.99513 0.94311 1.15826 0.82878 0.80671 0.79827 1.90881 1.48039 1.62331 1.45688 1.45491 1.14633 1.19056 1.60532 1.21464 0.97878 0.80349 0.99060 1.21877 0.92431 1.01104 1.00360 1.19022 0.96560 0.89054 0.96689 1.21214 0.99304 1.00452 1.34965 0.92682 1.25030 0.97665 0.96562 0.95234 1.69970 1.36670 1.07926 1.38744 0.86590 0.84863 0.77576 0.78926 1.20687 1.21228 1.19909 1.22490 0.96252 0.94507 0.96255 1.21530 0.93314 1.02627 1.00653 1.21569 0.99215 1.01595 0.96375 0.91727 0.91235 0.91697 0.93502 0.93469 0.89789 0.88075 0.93993 0.88169 0.92111 0.77255 0.92111 0.92123 0.92876 0.92878 0.96275 0.96266 0.92962 0.91309 0.92206 0.92541 0.91728 0.93858 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.05 0.36 6.51 37.16 0.24 0.60 16 3 O -0.35 -3.16 5.30 -35.23 -0.19 -3.34 16 4 C 0.07 0.59 3.77 -25.92 -0.10 0.49 16 5 H 0.07 0.49 7.85 -51.93 -0.41 0.09 16 6 C -0.17 -1.30 6.84 -25.93 -0.18 -1.48 16 7 C 0.16 1.82 3.48 -67.12 -0.23 1.58 16 8 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 9 N -0.61 -7.83 2.24 -178.73 -0.40 -8.23 16 10 C 0.07 0.70 8.33 59.85 0.50 1.20 16 11 C 0.71 11.79 7.09 -86.92 -0.62 11.17 16 12 O -0.59 -11.94 14.56 5.28 0.08 -11.87 16 13 N -0.74 -11.97 5.42 -65.23 -0.35 -12.32 16 14 C 0.14 2.57 5.67 -4.05 -0.02 2.55 16 15 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 16 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.09 -0.97 1.35 -153.69 -0.21 -1.17 16 26 C -0.12 -1.04 9.07 37.16 0.34 -0.70 16 27 C -0.13 -1.71 7.65 37.16 0.28 -1.43 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.61 6.20 -51.93 -0.32 0.29 16 34 H 0.10 0.58 7.66 -51.93 -0.40 0.18 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.88 3.62 -51.93 -0.19 0.69 16 37 H 0.06 0.61 6.67 -51.93 -0.35 0.27 16 38 H 0.39 5.40 6.33 -40.82 -0.26 5.14 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 49 H 0.06 0.93 6.46 -51.93 -0.34 0.60 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 1.16 6.33 -51.93 -0.33 0.83 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -33.21 391.22 -8.82 -42.03 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -9.27 Total: 1.03 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.30 Total: -3.45 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.02 Total: -47.04 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.11 Total: -15.21 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.21 -8.82 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178658540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.766 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds