Wall clock time and date at job start Tue Mar 31 2020 10:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.46795 * 2 1 4 4 C 1.42906 * 113.99702 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84801 * 338.30172 * 4 3 2 6 6 C 1.53771 * 113.61488 * 109.50606 * 4 3 2 7 7 C 1.53778 * 87.08633 * 89.11546 * 6 4 3 8 8 H 1.08998 * 113.61653 * 140.06230 * 7 6 4 9 9 N 1.46498 * 113.61344 * 270.88244 * 7 6 4 10 10 C 1.46504 * 119.99922 * 0.05031 * 9 7 6 11 11 C 1.34778 * 120.00468 * 180.02562 * 9 7 6 12 12 O 1.21593 * 119.99271 * 359.97438 * 11 9 7 13 13 N 1.34771 * 120.00506 * 180.02562 * 11 9 7 14 14 C 1.46497 * 120.00206 * 180.02562 * 13 11 9 15 15 C 1.52996 * 109.47104 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47237 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47297 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47095 * 90.00325 * 21 19 17 23 23 H 1.48504 * 109.47407 * 210.00037 * 21 19 17 24 24 H 1.48499 * 109.47086 * 330.00329 * 21 19 17 25 25 C 1.53784 * 87.08108 * 25.42943 * 7 6 4 26 26 C 1.53001 * 113.61138 * 89.11960 * 25 7 6 27 27 C 1.53001 * 113.61669 * 220.02247 * 25 7 6 28 28 H 1.09002 * 109.47011 * 60.00614 * 1 2 3 29 29 H 1.09002 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47267 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47267 * 239.99865 * 2 1 3 32 32 H 1.08999 * 109.46662 * 119.99768 * 2 1 3 33 33 H 1.08996 * 113.61690 * 334.56168 * 6 4 3 34 34 H 1.09004 * 113.68861 * 203.67327 * 6 4 3 35 35 H 1.09002 * 109.46960 * 264.46903 * 10 9 7 36 36 H 1.09001 * 109.46970 * 24.46759 * 10 9 7 37 37 H 1.08998 * 109.47157 * 144.46846 * 10 9 7 38 38 H 0.97004 * 119.99593 * 359.97438 * 13 11 9 39 39 H 1.09004 * 109.46943 * 299.99585 * 14 13 11 40 40 H 1.08996 * 109.47493 * 59.99666 * 14 13 11 41 41 H 1.08995 * 109.47485 * 300.00153 * 15 14 13 42 42 H 1.09010 * 109.47201 * 60.00114 * 15 14 13 43 43 H 1.09004 * 109.47062 * 300.00342 * 16 15 14 44 44 H 1.09003 * 109.47390 * 59.99965 * 16 15 14 45 45 H 0.97002 * 120.00280 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.47355 * 59.99999 * 26 25 7 47 47 H 1.09003 * 109.46829 * 180.02562 * 26 25 7 48 48 H 1.09002 * 109.47193 * 299.99621 * 26 25 7 49 49 H 1.08994 * 109.46928 * 59.99849 * 27 25 7 50 50 H 1.09000 * 109.47049 * 179.97438 * 27 25 7 51 51 H 1.09005 * 109.46843 * 300.00029 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9266 0.5631 0.3704 6 6 4.0073 1.9779 -1.3288 7 6 3.8420 3.3959 -0.7572 8 1 4.6699 4.0629 -0.9976 9 7 2.5326 3.9915 -1.0347 10 6 1.5306 3.2376 -1.7923 11 6 2.2495 5.2329 -0.5927 12 8 3.0809 5.8583 0.0368 13 7 1.0448 5.7807 -0.8476 14 6 0.7374 7.1302 -0.3676 15 6 -0.6835 7.5100 -0.7889 16 6 -1.0049 8.9191 -0.2871 17 6 -2.4047 9.2930 -0.7015 18 1 -3.0053 8.5951 -1.2660 19 6 -2.9191 10.5255 -0.3591 20 7 -2.1879 11.3752 0.3287 21 14 -4.6540 10.9892 -0.8735 22 1 -5.6112 10.5733 0.1828 23 1 -4.7371 12.4594 -1.0656 24 1 -4.9928 10.3037 -2.1464 25 6 3.9460 2.7602 0.6392 26 6 5.3806 2.6598 1.1614 27 6 2.9811 3.3646 1.6613 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.3694 1.7769 -2.1895 34 1 5.0460 1.6930 -1.4962 35 1 1.5825 3.5194 -2.8440 36 1 1.7269 2.1701 -1.6921 37 1 0.5371 3.4623 -1.4045 38 1 0.3815 5.2815 -1.3495 39 1 0.8133 7.1552 0.7195 40 1 1.4451 7.8389 -0.7976 41 1 -0.7592 7.4850 -1.8759 42 1 -1.3916 6.8014 -0.3591 43 1 -0.9294 8.9437 0.8001 44 1 -0.2969 9.6280 -0.7165 45 1 -2.5499 12.2422 0.5699 46 1 5.8149 3.6575 1.2251 47 1 5.3760 2.2014 2.1504 48 1 5.9731 2.0484 0.4808 49 1 1.9558 3.2286 1.3175 50 1 3.1110 2.8667 2.6222 51 1 3.1890 4.4289 1.7720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178658540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:48 Heat of formation + Delta-G solvation = -74.919025 kcal Electronic energy + Delta-G solvation = -27544.864944 eV Core-core repulsion = 23865.562286 eV Total energy + Delta-G solvation = -3679.302659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16894 -40.26505 -37.68099 -36.84367 -35.70497 -34.98584 -32.81697 -32.00925 -31.18587 -28.63412 -28.20477 -27.80469 -25.72184 -24.53349 -23.75883 -23.05762 -22.29511 -21.23937 -19.46359 -18.74247 -18.45772 -17.75027 -17.30439 -17.00399 -16.57469 -16.46010 -16.23837 -15.76709 -15.62538 -14.91449 -14.88113 -14.33377 -14.22683 -14.14279 -14.00901 -13.75704 -13.58730 -13.49870 -13.39734 -12.99639 -12.95742 -12.94828 -12.73063 -12.59849 -12.47247 -12.36065 -12.18356 -11.97058 -11.73754 -11.67584 -11.58476 -11.40938 -11.25427 -11.06473 -11.01092 -10.55597 -10.19149 -10.10696 -9.30719 -8.19324 -6.31161 1.41321 1.43239 1.54181 1.68422 2.19361 2.41977 2.63080 3.08453 3.14191 3.49725 3.54418 3.72994 4.06168 4.15792 4.21366 4.25638 4.29861 4.34195 4.36573 4.46996 4.54600 4.58961 4.63267 4.70307 4.75337 4.79630 4.85309 4.88944 4.94476 4.97183 4.98295 5.04439 5.10804 5.11437 5.13657 5.16393 5.17296 5.34428 5.43865 5.45686 5.49349 5.56823 5.69900 5.71391 5.83566 6.04182 6.22378 6.42311 6.85669 7.04323 7.38318 7.63840 8.93018 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.002669 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.604968 B =10488.565305 C =11283.284100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.372 6.372 4 C 0.079 3.921 5 H 0.097 0.903 6 C -0.149 4.149 7 C 0.139 3.861 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.067 3.933 11 C 0.699 3.301 12 O -0.634 6.634 13 N -0.734 5.734 14 C 0.152 3.848 15 C -0.099 4.099 16 C 0.025 3.975 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.101 4.101 26 C -0.120 4.120 27 C -0.121 4.121 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.059 0.941 38 H 0.407 0.593 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.065 0.935 43 H -0.009 1.009 44 H -0.008 1.008 45 H 0.263 0.737 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.923 -30.453 -4.448 33.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.291 6.291 4 C 0.021 3.979 5 H 0.115 0.885 6 C -0.186 4.186 7 C 0.034 3.966 8 H 0.085 0.915 9 N -0.336 5.336 10 C -0.075 4.075 11 C 0.401 3.599 12 O -0.516 6.516 13 N -0.391 5.391 14 C 0.027 3.973 15 C -0.137 4.137 16 C -0.012 4.012 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.183 1.183 25 C -0.103 4.103 26 C -0.177 4.177 27 C -0.179 4.179 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.146 0.854 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.244 0.756 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.367 -29.691 -3.949 32.405 hybrid contribution -1.007 0.813 0.075 1.297 sum 11.359 -28.878 -3.874 31.273 Atomic orbital electron populations 1.21767 0.93694 1.03021 1.02403 1.22677 0.95579 0.83178 1.01072 1.87973 1.19928 1.27324 1.93871 1.23123 0.81744 0.97303 0.95707 0.88503 1.23855 1.04112 0.92266 0.98368 1.21899 0.83762 0.94630 0.96285 0.91526 1.46516 1.16089 1.13292 1.57700 1.22226 0.90536 1.00229 0.94514 1.16038 0.82354 0.81806 0.79710 1.90851 1.49276 1.63845 1.47578 1.45187 1.15176 1.18019 1.60709 1.21024 0.96689 0.81727 0.97821 1.21575 0.93302 0.97838 1.00957 1.18925 0.95568 0.91885 0.94848 1.21669 1.00222 1.00982 1.35009 0.91518 1.26048 1.02510 0.96527 0.95077 1.70121 1.39005 1.08465 1.40010 0.85390 0.78929 0.77246 0.79127 1.19781 1.20968 1.18348 1.22608 0.96815 0.95985 0.94861 1.21512 0.92282 1.02143 1.01776 1.21426 0.99206 0.99365 0.97884 0.91935 0.89567 0.93479 0.91550 0.92987 0.88805 0.85362 0.92603 0.86304 0.92250 0.75589 0.93955 0.93698 0.91444 0.91614 0.99074 0.98955 0.92789 0.93290 0.91490 0.89687 0.93304 0.93108 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.05 0.52 6.51 71.98 0.47 0.99 16 3 O -0.37 -5.78 5.30 -148.98 -0.79 -6.57 16 4 C 0.08 1.07 3.77 31.12 0.12 1.19 16 5 H 0.10 0.89 7.85 -2.39 -0.02 0.87 16 6 C -0.15 -1.75 6.84 31.12 0.21 -1.54 16 7 C 0.14 3.00 3.48 45.52 0.16 3.16 16 8 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 9 N -0.60 -15.16 2.24 -837.64 -1.88 -17.04 16 10 C 0.07 1.20 8.33 127.77 1.06 2.27 16 11 C 0.70 24.03 7.09 179.06 1.27 25.30 16 12 O -0.63 -27.16 14.56 -4.01 -0.06 -27.22 16 13 N -0.73 -24.02 5.42 -478.55 -2.59 -26.61 16 14 C 0.15 6.00 5.67 86.38 0.49 6.49 16 15 C -0.10 -4.07 5.27 30.59 0.16 -3.91 16 16 C 0.03 1.38 4.97 29.85 0.15 1.53 16 17 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 18 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 19 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 20 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 21 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 25 C -0.10 -2.00 1.35 -51.65 -0.07 -2.07 16 26 C -0.12 -1.86 9.07 71.98 0.65 -1.20 16 27 C -0.12 -3.29 7.65 71.98 0.55 -2.74 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.98 6.20 -2.39 -0.01 0.96 16 34 H 0.13 0.88 7.66 -2.38 -0.02 0.86 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.12 1.73 3.62 -2.39 -0.01 1.72 16 37 H 0.06 1.10 6.67 -2.39 -0.02 1.08 16 38 H 0.41 10.85 6.33 -92.71 -0.59 10.27 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.82 7.34 -2.39 -0.02 0.81 16 49 H 0.05 1.44 6.46 -2.39 -0.02 1.43 16 50 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.03 1.11 6.33 -2.38 -0.02 1.10 16 Total: -1.00 -75.46 391.22 3.96 -71.50 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.31 Total: 19.35 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 6.66 Total: -1.92 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.19 Total: -101.69 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.85 Total: -33.79 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.46 3.96 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178658540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.415 kcal (2) G-P(sol) polarization free energy of solvation -75.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds