Wall clock time and date at job start Tue Mar 31 2020 10:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47292 * 2 1 4 4 C 1.34632 * 117.00042 * 179.97438 * 3 2 1 5 5 O 1.21509 * 120.00448 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99780 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63033 * 359.72244 * 6 4 3 8 8 C 1.53187 * 108.77642 * 126.66473 * 7 6 4 9 9 C 1.53041 * 109.31211 * 54.63373 * 8 7 6 10 10 C 1.52994 * 109.46090 * 178.61149 * 9 8 7 11 11 H 1.08999 * 109.47400 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47025 * 60.07291 * 10 9 8 13 13 N 1.46897 * 109.47534 * 300.07293 * 10 9 8 14 14 C 1.46903 * 111.00316 * 204.99940 * 13 10 9 15 15 C 1.52991 * 109.47287 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.47095 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47288 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99916 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00254 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00173 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00051 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47067 * 90.00079 * 21 19 17 23 23 H 1.48492 * 109.47294 * 210.00132 * 21 19 17 24 24 H 1.48504 * 109.46933 * 330.00552 * 21 19 17 25 25 C 1.53038 * 109.53768 * 298.63806 * 9 8 7 26 26 C 1.46926 * 120.62918 * 180.02562 * 6 4 3 27 27 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46781 * 299.99335 * 1 2 3 29 29 H 1.08997 * 109.46960 * 59.99724 * 1 2 3 30 30 H 1.09009 * 109.47111 * 240.00529 * 2 1 3 31 31 H 1.09000 * 109.47462 * 120.00212 * 2 1 3 32 32 H 1.09003 * 109.58516 * 246.45674 * 7 6 4 33 33 H 1.09002 * 109.58479 * 6.87832 * 7 6 4 34 34 H 1.08999 * 109.49975 * 294.68379 * 8 7 6 35 35 H 1.09004 * 109.52338 * 174.59879 * 8 7 6 36 36 H 1.09007 * 109.45589 * 58.65622 * 9 8 7 37 37 H 1.08992 * 109.47162 * 59.99417 * 12 10 9 38 38 H 1.09003 * 109.47095 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.46862 * 299.99600 * 12 10 9 40 40 H 1.00893 * 111.00482 * 81.04460 * 13 10 9 41 41 H 1.08994 * 109.46892 * 300.00061 * 14 13 10 42 42 H 1.09004 * 109.46940 * 59.99564 * 14 13 10 43 43 H 1.09003 * 109.47044 * 299.99484 * 15 14 13 44 44 H 1.08990 * 109.47337 * 59.99780 * 15 14 13 45 45 H 1.09002 * 109.47418 * 299.99785 * 16 15 14 46 46 H 1.09004 * 109.47481 * 60.00209 * 16 15 14 47 47 H 0.96999 * 119.99882 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.49677 * 301.40907 * 25 9 8 49 49 H 1.09001 * 109.52131 * 181.33314 * 25 9 8 50 50 H 1.09002 * 109.58798 * 353.11768 * 26 6 4 51 51 H 1.08996 * 109.58781 * 113.40238 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0011 7 6 2.9818 3.9658 -0.0050 8 6 3.3727 4.8819 1.1589 9 6 4.8634 5.2146 1.0625 10 6 5.2501 6.1574 2.2037 11 1 6.3116 6.3949 2.1350 12 6 4.9662 5.4780 3.5449 13 7 4.4634 7.3941 2.1051 14 6 5.1615 8.5149 2.7490 15 6 4.3136 9.7823 2.6256 16 6 5.0410 10.9497 3.2957 17 6 4.2061 12.1984 3.1736 18 1 3.2523 12.1630 2.6682 19 6 4.6604 13.3863 3.7061 20 7 3.9315 14.4759 3.6000 21 14 6.3104 13.4478 4.5796 22 1 7.3784 13.7666 3.5982 23 1 6.2752 14.4959 5.6309 24 1 6.5894 12.1295 5.2040 25 6 5.6830 3.9263 1.1654 26 6 5.3183 2.9994 0.0011 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.0950 4.5028 -0.9468 33 1 1.9465 3.6460 0.1135 34 1 3.1733 4.3756 2.1033 35 1 2.7906 5.8022 1.1094 36 1 5.0663 5.6988 0.1072 37 1 5.5498 4.5604 3.6180 38 1 5.2412 6.1498 4.3580 39 1 3.9048 5.2400 3.6141 40 1 3.5422 7.2689 2.4970 41 1 5.3220 8.2858 3.8025 42 1 6.1233 8.6725 2.2608 43 1 4.1535 10.0112 1.5720 44 1 3.3518 9.6250 3.1134 45 1 5.2015 10.7212 4.3493 46 1 6.0027 11.1071 2.8074 47 1 4.2513 15.3116 3.9744 48 1 5.4619 3.4289 2.1098 49 1 6.7454 4.1659 1.1205 50 1 5.8247 2.0420 0.1237 51 1 5.6221 3.4554 -0.9411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186425209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:13 Heat of formation + Delta-G solvation = -104.496115 kcal Electronic energy + Delta-G solvation = -26284.495782 eV Core-core repulsion = 22603.910564 eV Total energy + Delta-G solvation = -3680.585218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97172 -39.28335 -37.27841 -36.32806 -34.48028 -32.92025 -32.07746 -31.35479 -31.14501 -29.14806 -26.42513 -25.80960 -23.93977 -23.53515 -22.63047 -21.95195 -20.84476 -20.11436 -19.39090 -18.17954 -17.26788 -16.95284 -16.73342 -15.62576 -15.31866 -15.09345 -14.95999 -14.90969 -14.45511 -14.20609 -13.97144 -13.72266 -13.52095 -13.43242 -13.17782 -12.81631 -12.48354 -12.47287 -12.40898 -12.23599 -12.00345 -11.97620 -11.82595 -11.61802 -11.22765 -11.04762 -10.92028 -10.86540 -10.81751 -10.79673 -10.61419 -10.35863 -9.94751 -9.72101 -9.54553 -9.16603 -9.05877 -8.52675 -8.21660 -6.03047 -4.00706 1.82008 2.53041 3.30910 3.38153 3.41632 3.51762 4.18220 4.44644 4.45973 4.54345 4.56423 4.59791 4.73141 4.81603 4.88813 4.93464 4.99983 5.10600 5.19839 5.21178 5.28848 5.30887 5.37329 5.38968 5.46695 5.55681 5.57219 5.60868 5.63219 5.71516 5.76492 5.80131 5.89943 5.93322 6.01555 6.07755 6.18950 6.21094 6.29517 6.56641 6.59200 6.92842 7.02652 7.23445 7.35552 7.45054 7.57806 7.81641 7.98330 8.56176 9.02525 9.59645 11.10492 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.002037 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.618913 B =13742.281460 C =14310.411545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.650 3.350 5 O -0.579 6.579 6 N -0.591 5.591 7 C 0.112 3.888 8 C -0.130 4.130 9 C -0.075 4.075 10 C 0.088 3.912 11 H 0.076 0.924 12 C -0.187 4.187 13 N -0.684 5.684 14 C 0.057 3.943 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.904 5.904 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.267 1.267 25 C -0.133 4.133 26 C 0.128 3.872 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.338 0.662 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.057 -29.693 -6.874 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.405 3.595 5 O -0.469 6.469 6 N -0.332 5.332 7 C -0.011 4.011 8 C -0.169 4.169 9 C -0.094 4.094 10 C -0.023 4.023 11 H 0.094 0.906 12 C -0.245 4.245 13 N -0.314 5.314 14 C -0.072 4.072 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.544 5.544 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 C -0.172 4.172 26 C 0.007 3.993 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.112 0.888 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.668 -29.689 -7.458 30.657 hybrid contribution 0.763 -0.044 1.502 1.685 sum -0.905 -29.733 -5.956 30.337 Atomic orbital electron populations 1.21831 0.92477 1.03087 1.03647 1.22948 0.94862 0.78783 1.02685 1.86238 1.22110 1.33056 1.86966 1.18008 0.81158 0.84071 0.76299 1.90975 1.59859 1.39498 1.56547 1.46974 1.07567 1.03058 1.75589 1.21802 0.94075 0.85699 0.99488 1.22011 0.96990 0.99801 0.98057 1.21125 0.94435 0.94052 0.99759 1.21529 0.98179 0.89681 0.92881 0.90562 1.22611 1.02052 1.01253 0.98610 1.60628 1.05692 1.03765 1.61334 1.22164 0.98187 0.91072 0.95733 1.21436 0.98020 0.92832 1.01449 1.19543 0.96061 0.94143 0.95354 1.21156 1.06041 0.91851 1.36598 0.91033 1.25051 0.97182 0.95639 0.95783 1.69921 1.38036 0.99995 1.46415 0.86763 0.84696 0.77896 0.79802 1.20312 1.21446 1.19130 1.22084 1.00563 0.95877 0.98641 1.21668 0.77540 1.01143 0.98971 0.90004 0.91389 0.91411 0.91257 0.91263 0.90933 0.89172 0.91600 0.89406 0.90058 0.92161 0.92702 0.92277 0.84344 0.95836 0.91604 0.91978 0.93110 0.96919 0.97093 0.92794 0.91142 0.90252 0.88807 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.36 16 2 C 0.08 0.62 6.19 37.16 0.23 0.85 16 3 O -0.37 -3.68 8.86 -40.30 -0.36 -4.03 16 4 C 0.65 7.49 8.43 54.06 0.46 7.94 16 5 O -0.58 -8.18 15.55 -19.28 -0.30 -8.48 16 6 N -0.59 -5.63 2.97 -178.54 -0.53 -6.16 16 7 C 0.11 0.89 6.45 -3.71 -0.02 0.87 16 8 C -0.13 -1.06 4.73 -26.61 -0.13 -1.19 16 9 C -0.07 -0.64 2.17 -90.58 -0.20 -0.83 16 10 C 0.09 0.89 2.42 -67.71 -0.16 0.73 16 11 H 0.08 0.82 7.80 -51.93 -0.41 0.42 16 12 C -0.19 -1.78 8.46 37.16 0.31 -1.46 16 13 N -0.68 -8.58 5.76 -106.73 -0.61 -9.19 16 14 C 0.06 0.88 5.48 -3.83 -0.02 0.86 16 15 C -0.10 -1.93 5.41 -26.74 -0.14 -2.07 16 16 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 17 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 18 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 20 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 21 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 25 C -0.13 -1.02 4.97 -26.60 -0.13 -1.16 16 26 C 0.13 1.07 6.43 -3.69 -0.02 1.05 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.70 6.93 -51.93 -0.36 0.34 16 34 H 0.07 0.57 6.51 -51.93 -0.34 0.23 16 35 H 0.09 0.75 7.14 -51.93 -0.37 0.38 16 36 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.06 0.52 6.46 -51.93 -0.34 0.18 16 38 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 39 H 0.06 0.54 6.45 -51.93 -0.33 0.21 16 40 H 0.34 4.05 7.69 -39.30 -0.30 3.75 16 41 H 0.02 0.36 7.43 -51.93 -0.39 -0.02 16 42 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 46 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 0.59 6.51 -51.93 -0.34 0.25 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.87 7.01 -51.93 -0.36 0.51 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 391.98 15.07 5.91 5.91 Total: -1.00 -32.80 391.98 -9.12 -41.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -9.34 Total: -1.19 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.01 Total: -8.65 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.37 Total: -42.67 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.66 Total: -12.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.80 -9.12 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.573 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds