Wall clock time and date at job start Tue Mar 31 2020 10:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47292 * 2 1 4 4 C 1.34632 * 117.00042 * 179.97438 * 3 2 1 5 5 O 1.21509 * 120.00448 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99780 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63033 * 359.72244 * 6 4 3 8 8 C 1.53187 * 108.77642 * 126.66473 * 7 6 4 9 9 C 1.53041 * 109.31211 * 54.63373 * 8 7 6 10 10 C 1.52994 * 109.46090 * 178.61149 * 9 8 7 11 11 H 1.08999 * 109.47400 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.47025 * 60.07291 * 10 9 8 13 13 N 1.46897 * 109.47534 * 300.07293 * 10 9 8 14 14 C 1.46903 * 111.00316 * 204.99940 * 13 10 9 15 15 C 1.52991 * 109.47287 * 179.97438 * 14 13 10 16 16 C 1.52999 * 109.47095 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47288 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99916 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00254 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00173 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00051 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.47067 * 90.00079 * 21 19 17 23 23 H 1.48492 * 109.47294 * 210.00132 * 21 19 17 24 24 H 1.48504 * 109.46933 * 330.00552 * 21 19 17 25 25 C 1.53038 * 109.53768 * 298.63806 * 9 8 7 26 26 C 1.46926 * 120.62918 * 180.02562 * 6 4 3 27 27 H 1.09003 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46781 * 299.99335 * 1 2 3 29 29 H 1.08997 * 109.46960 * 59.99724 * 1 2 3 30 30 H 1.09009 * 109.47111 * 240.00529 * 2 1 3 31 31 H 1.09000 * 109.47462 * 120.00212 * 2 1 3 32 32 H 1.09003 * 109.58516 * 246.45674 * 7 6 4 33 33 H 1.09002 * 109.58479 * 6.87832 * 7 6 4 34 34 H 1.08999 * 109.49975 * 294.68379 * 8 7 6 35 35 H 1.09004 * 109.52338 * 174.59879 * 8 7 6 36 36 H 1.09007 * 109.45589 * 58.65622 * 9 8 7 37 37 H 1.08992 * 109.47162 * 59.99417 * 12 10 9 38 38 H 1.09003 * 109.47095 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.46862 * 299.99600 * 12 10 9 40 40 H 1.00893 * 111.00482 * 81.04460 * 13 10 9 41 41 H 1.08994 * 109.46892 * 300.00061 * 14 13 10 42 42 H 1.09004 * 109.46940 * 59.99564 * 14 13 10 43 43 H 1.09003 * 109.47044 * 299.99484 * 15 14 13 44 44 H 1.08990 * 109.47337 * 59.99780 * 15 14 13 45 45 H 1.09002 * 109.47418 * 299.99785 * 16 15 14 46 46 H 1.09004 * 109.47481 * 60.00209 * 16 15 14 47 47 H 0.96999 * 119.99882 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.49677 * 301.40907 * 25 9 8 49 49 H 1.09001 * 109.52131 * 181.33314 * 25 9 8 50 50 H 1.09002 * 109.58798 * 353.11768 * 26 6 4 51 51 H 1.08996 * 109.58781 * 113.40238 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0011 7 6 2.9818 3.9658 -0.0050 8 6 3.3727 4.8819 1.1589 9 6 4.8634 5.2146 1.0625 10 6 5.2501 6.1574 2.2037 11 1 6.3116 6.3949 2.1350 12 6 4.9662 5.4780 3.5449 13 7 4.4634 7.3941 2.1051 14 6 5.1615 8.5149 2.7490 15 6 4.3136 9.7823 2.6256 16 6 5.0410 10.9497 3.2957 17 6 4.2061 12.1984 3.1736 18 1 3.2523 12.1630 2.6682 19 6 4.6604 13.3863 3.7061 20 7 3.9315 14.4759 3.6000 21 14 6.3104 13.4478 4.5796 22 1 7.3784 13.7666 3.5982 23 1 6.2752 14.4959 5.6309 24 1 6.5894 12.1295 5.2040 25 6 5.6830 3.9263 1.1654 26 6 5.3183 2.9994 0.0011 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.0950 4.5028 -0.9468 33 1 1.9465 3.6460 0.1135 34 1 3.1733 4.3756 2.1033 35 1 2.7906 5.8022 1.1094 36 1 5.0663 5.6988 0.1072 37 1 5.5498 4.5604 3.6180 38 1 5.2412 6.1498 4.3580 39 1 3.9048 5.2400 3.6141 40 1 3.5422 7.2689 2.4970 41 1 5.3220 8.2858 3.8025 42 1 6.1233 8.6725 2.2608 43 1 4.1535 10.0112 1.5720 44 1 3.3518 9.6250 3.1134 45 1 5.2015 10.7212 4.3493 46 1 6.0027 11.1071 2.8074 47 1 4.2513 15.3116 3.9744 48 1 5.4619 3.4289 2.1098 49 1 6.7454 4.1659 1.1205 50 1 5.8247 2.0420 0.1237 51 1 5.6221 3.4554 -0.9411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186425209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:12 Heat of formation + Delta-G solvation = -124.974673 kcal Electronic energy + Delta-G solvation = -26285.383799 eV Core-core repulsion = 22603.910564 eV Total energy + Delta-G solvation = -3681.473235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76099 -40.05922 -38.15533 -37.29173 -35.94242 -34.48625 -33.07012 -32.31440 -31.97372 -30.26951 -27.88345 -26.69050 -24.73092 -24.20129 -23.83043 -22.97740 -21.92683 -21.47077 -20.17737 -18.95384 -18.87888 -18.06094 -17.70024 -16.70236 -16.39082 -16.12838 -15.98543 -15.72010 -15.60889 -15.18178 -14.94252 -14.76360 -14.63197 -14.35094 -14.20534 -13.80184 -13.61421 -13.52201 -13.29881 -13.13241 -13.02058 -12.87512 -12.69896 -12.53326 -12.51744 -12.48761 -11.95519 -11.85953 -11.77105 -11.70885 -11.53950 -11.52117 -11.45538 -11.31389 -11.18695 -10.96408 -10.75144 -9.81676 -9.22601 -8.28236 -6.32246 1.11237 1.36560 1.38360 1.50402 1.67229 2.37171 2.84218 3.06981 3.22973 3.76400 3.85914 3.99286 4.02272 4.08772 4.13148 4.20308 4.27670 4.33845 4.35611 4.36667 4.45627 4.50985 4.59391 4.62682 4.73105 4.77549 4.83598 4.85028 4.92232 4.93332 4.95370 5.00759 5.05499 5.09918 5.12453 5.16027 5.17980 5.24845 5.29452 5.40205 5.52950 5.55986 5.59309 5.65142 5.68577 6.20136 6.24384 6.32175 6.57227 6.76371 7.16220 7.32267 8.88647 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.002037 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.618913 B =13742.281460 C =14310.411545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.372 6.372 4 C 0.644 3.356 5 O -0.612 6.612 6 N -0.589 5.589 7 C 0.113 3.887 8 C -0.125 4.125 9 C -0.067 4.067 10 C 0.090 3.910 11 H 0.075 0.925 12 C -0.182 4.182 13 N -0.685 5.685 14 C 0.071 3.929 15 C -0.091 4.091 16 C -0.011 4.011 17 C -0.532 4.532 18 H 0.030 0.970 19 C 0.000 4.000 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.246 1.246 25 C -0.124 4.124 26 C 0.126 3.874 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.342 0.658 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.266 0.734 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -31.117 -6.509 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.286 6.286 4 C 0.399 3.601 5 O -0.504 6.504 6 N -0.329 5.329 7 C -0.008 4.008 8 C -0.163 4.163 9 C -0.087 4.087 10 C -0.020 4.020 11 H 0.093 0.907 12 C -0.240 4.240 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.129 4.129 16 C -0.049 4.049 17 C -0.571 4.571 18 H 0.048 0.952 19 C -0.197 4.197 20 N -0.594 5.594 21 Si 0.777 3.223 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.169 1.169 25 C -0.162 4.162 26 C 0.005 3.995 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.161 0.839 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.101 0.899 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.420 -31.125 -7.102 31.928 hybrid contribution 0.249 0.396 1.328 1.408 sum -0.171 -30.730 -5.774 31.268 Atomic orbital electron populations 1.21838 0.90262 1.04480 1.03683 1.23201 0.96535 0.77810 1.02456 1.86254 1.21238 1.34419 1.86686 1.18244 0.81446 0.84296 0.76137 1.90945 1.60636 1.40635 1.58208 1.47134 1.08236 1.02830 1.74659 1.21862 0.93989 0.85100 0.99879 1.21947 0.96737 0.99625 0.97961 1.21044 0.94734 0.93991 0.98891 1.21563 0.97745 0.88819 0.93864 0.90651 1.22553 1.02437 1.01369 0.97660 1.60567 1.05989 1.04109 1.60936 1.21873 0.97439 0.90151 0.96322 1.21260 0.98112 0.93487 1.00016 1.19500 0.95828 0.93421 0.96150 1.21538 1.05269 0.94332 1.35915 0.95176 1.26082 1.01762 0.95063 0.96758 1.70082 1.40473 1.00873 1.47937 0.85603 0.79143 0.78870 0.78668 1.19121 1.21056 1.16938 1.22010 1.01211 0.94985 0.98033 1.21756 0.76895 1.00861 0.99962 0.87924 0.91391 0.91246 0.91450 0.91619 0.89986 0.88954 0.91858 0.89563 0.90324 0.91061 0.93763 0.92007 0.83913 0.95431 0.91347 0.93177 0.93606 0.96376 0.96334 0.92558 0.91618 0.88856 0.89874 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.29 71.98 0.74 -0.48 16 2 C 0.07 1.08 6.19 71.98 0.45 1.52 16 3 O -0.37 -7.19 8.86 -55.42 -0.49 -7.68 16 4 C 0.64 14.53 8.43 129.79 1.09 15.62 16 5 O -0.61 -17.34 15.55 19.81 0.31 -17.03 16 6 N -0.59 -10.52 2.97 -949.18 -2.82 -13.34 16 7 C 0.11 1.63 6.45 86.36 0.56 2.19 16 8 C -0.12 -1.80 4.73 30.67 0.14 -1.66 16 9 C -0.07 -1.00 2.17 -10.77 -0.02 -1.03 16 10 C 0.09 1.62 2.42 44.92 0.11 1.72 16 11 H 0.08 1.41 7.80 -2.39 -0.02 1.40 16 12 C -0.18 -3.05 8.46 71.98 0.61 -2.44 16 13 N -0.69 -15.84 5.76 -491.59 -2.83 -18.67 16 14 C 0.07 2.06 5.48 86.30 0.47 2.54 16 15 C -0.09 -3.45 5.41 30.59 0.17 -3.29 16 16 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 17 C -0.53 -31.10 9.66 25.60 0.25 -30.86 16 18 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 19 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 20 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 21 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 25 C -0.12 -1.64 4.97 30.68 0.15 -1.49 16 26 C 0.13 1.92 6.43 86.37 0.56 2.47 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.31 6.93 -2.39 -0.02 1.30 16 34 H 0.06 0.97 6.51 -2.39 -0.02 0.95 16 35 H 0.09 1.31 7.14 -2.38 -0.02 1.30 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.05 6.46 -2.39 -0.02 1.04 16 38 H 0.04 0.85 7.45 -2.39 -0.02 0.83 16 39 H 0.06 1.01 6.45 -2.39 -0.02 0.99 16 40 H 0.34 7.58 7.69 -89.70 -0.69 6.89 16 41 H 0.03 0.78 7.43 -2.39 -0.02 0.77 16 42 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 43 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 46 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 47 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.07 0.96 6.51 -2.39 -0.02 0.94 16 49 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.49 7.01 -2.39 -0.02 1.47 16 51 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.56 391.98 2.35 -69.21 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.15 Total: 16.42 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.85 Total: -15.12 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -5.35 Total: -92.13 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.18 Total: -24.70 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -71.56 2.35 -69.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186425209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.764 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds