Wall clock time and date at job start Tue Mar 31 2020 10:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99806 * 2 1 4 4 C 1.53005 * 109.47057 * 66.04624 * 3 2 1 5 5 C 1.50695 * 109.47133 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99908 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99963 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00097 * 359.97438 * 7 5 4 9 9 C 1.46498 * 120.00236 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47454 * 89.99827 * 9 7 5 11 11 H 1.08000 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00126 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99857 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00201 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46978 * 89.99920 * 14 12 10 16 16 H 1.48499 * 109.47132 * 210.00188 * 14 12 10 17 17 H 1.48498 * 109.46728 * 330.00230 * 14 12 10 18 18 C 1.46892 * 111.00169 * 236.04882 * 2 1 3 19 19 C 1.53004 * 109.47356 * 287.51872 * 18 2 1 20 20 H 1.09004 * 109.46655 * 56.30422 * 19 18 2 21 21 C 1.52994 * 109.47319 * 176.30114 * 19 18 2 22 22 C 1.53004 * 109.47319 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.47062 * 300.00752 * 22 21 19 24 24 C 1.53003 * 109.47123 * 59.99506 * 23 22 21 25 25 C 1.52997 * 109.46987 * 296.30819 * 19 18 2 26 26 H 1.09000 * 109.47652 * 59.99667 * 25 19 18 27 27 O 1.42899 * 109.47016 * 299.99376 * 25 19 18 28 28 H 1.09000 * 109.46895 * 186.04701 * 1 2 3 29 29 H 1.08996 * 109.47622 * 306.04861 * 1 2 3 30 30 H 1.09003 * 109.46893 * 66.05396 * 1 2 3 31 31 H 1.08998 * 109.47088 * 186.04562 * 3 2 1 32 32 H 1.09003 * 109.47073 * 306.05060 * 3 2 1 33 33 H 1.09007 * 109.46718 * 300.00383 * 4 3 2 34 34 H 1.09003 * 109.47044 * 59.99778 * 4 3 2 35 35 H 1.09005 * 109.46876 * 90.00037 * 8 7 5 36 36 H 1.08996 * 109.47550 * 210.00241 * 8 7 5 37 37 H 1.09003 * 109.47273 * 330.00575 * 8 7 5 38 38 H 1.09002 * 109.47415 * 209.99575 * 9 7 5 39 39 H 1.09003 * 109.46964 * 329.99977 * 9 7 5 40 40 H 0.96996 * 119.99752 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.47288 * 167.52391 * 18 2 1 42 42 H 1.09002 * 109.47475 * 47.52318 * 18 2 1 43 43 H 1.09000 * 109.47669 * 300.00256 * 21 19 18 44 44 H 1.09004 * 109.47005 * 60.00523 * 21 19 18 45 45 H 1.09004 * 109.46655 * 60.00308 * 22 21 19 46 46 H 1.08996 * 109.47544 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.46566 * 179.97438 * 23 22 21 48 48 H 1.08994 * 109.47094 * 299.99341 * 23 22 21 49 49 H 1.08995 * 109.46788 * 60.00166 * 24 23 22 50 50 H 1.08999 * 109.46672 * 179.97438 * 24 23 22 51 51 H 0.96706 * 113.99568 * 180.02562 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1708 3.4646 1.3181 6 8 2.7863 3.8779 0.3582 7 7 1.9702 4.2633 2.3849 8 6 1.2273 3.7639 3.5446 9 6 2.4941 5.6314 2.3845 10 6 1.4608 6.5650 1.8086 11 1 0.5091 6.1778 1.4757 12 6 1.7307 7.9132 1.7056 13 7 0.8290 8.7278 1.2025 14 14 3.3770 8.5827 2.2807 15 1 4.3432 8.5563 1.1533 16 1 3.2054 9.9801 2.7530 17 1 3.8912 7.7439 3.3930 18 6 1.9955 -0.7659 -1.1375 19 6 1.7729 -2.2598 -0.8934 20 1 0.7127 -2.4458 -0.7211 21 6 2.2371 -3.0514 -2.1176 22 6 2.0151 -4.5454 -1.8732 23 6 2.8167 -4.9861 -0.6467 24 6 2.3523 -4.1944 0.5775 25 6 2.5740 -2.7010 0.3332 26 1 2.2432 -2.1370 1.2053 27 8 3.9638 -2.4572 0.1073 28 1 -0.3633 -1.0220 0.1083 29 1 -0.3634 0.6047 0.8308 30 1 -0.3633 0.4171 -0.9393 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8309 33 1 0.5470 2.0844 1.4265 34 1 2.0657 1.5015 2.1492 35 1 1.9200 3.3035 4.2490 36 1 0.7121 4.5925 4.0305 37 1 0.4970 3.0240 3.2170 38 1 2.7260 5.9321 3.4063 39 1 3.3995 5.6736 1.7790 40 1 1.0188 9.6763 1.1304 41 1 3.0625 -0.5703 -1.2446 42 1 1.4778 -0.4655 -2.0486 43 1 1.6663 -2.7371 -2.9914 44 1 3.2972 -2.8655 -2.2899 45 1 0.9550 -4.7317 -1.7006 46 1 2.3462 -5.1094 -2.7451 47 1 2.6581 -6.0504 -0.4723 48 1 3.8766 -4.7999 -0.8192 49 1 1.2924 -4.3808 0.7500 50 1 2.9231 -4.5088 1.4513 51 1 4.5332 -2.7140 0.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305793040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:30 Heat of formation + Delta-G solvation = -97.552385 kcal Electronic energy + Delta-G solvation = -26917.317657 eV Core-core repulsion = 23237.033542 eV Total energy + Delta-G solvation = -3680.284115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.82734 -39.10134 -37.16596 -35.19113 -34.88080 -32.69111 -32.30277 -30.57597 -29.82599 -28.31803 -27.04026 -25.93491 -24.79655 -22.88165 -22.59581 -21.33332 -20.54768 -19.83386 -18.34033 -16.99823 -16.94745 -16.54380 -15.91521 -15.79049 -15.39373 -15.21163 -14.78573 -14.61201 -14.49348 -14.04615 -13.87645 -13.29771 -13.21672 -13.03067 -12.79550 -12.68979 -12.35699 -12.22601 -12.21074 -11.98063 -11.81794 -11.72968 -11.62815 -11.55716 -11.34328 -11.01455 -10.98203 -10.85991 -10.68203 -10.62132 -10.48530 -10.19882 -10.12385 -9.76411 -9.52952 -8.96418 -8.57603 -8.33083 -7.66860 -6.07575 -4.06105 3.30381 3.36354 3.38260 3.40306 3.64558 4.05962 4.24408 4.40954 4.42439 4.48465 4.67511 4.88499 4.97263 5.05224 5.10946 5.18188 5.20114 5.21903 5.26202 5.33198 5.37566 5.39887 5.45806 5.53031 5.59734 5.60980 5.65466 5.70312 5.76391 5.82041 5.87914 5.90495 5.92878 5.98851 6.02931 6.08895 6.13252 6.18849 6.19346 6.29386 6.72168 6.96836 7.04997 7.06812 7.37098 7.57873 7.62876 8.28682 8.48716 8.94388 9.02637 9.52947 11.05877 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002383 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.703573 B =11748.735706 C =11824.313636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.541 5.541 3 C 0.073 3.927 4 C -0.133 4.133 5 C 0.507 3.493 6 O -0.544 6.544 7 N -0.600 5.600 8 C 0.085 3.915 9 C 0.215 3.785 10 C -0.527 4.527 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.878 3.122 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.062 3.938 19 C -0.071 4.071 20 H 0.077 0.923 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.154 4.154 25 C 0.118 3.882 26 H 0.068 0.932 27 O -0.561 6.561 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -28.458 0.359 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.265 5.265 3 C -0.055 4.055 4 C -0.173 4.173 5 C 0.293 3.707 6 O -0.422 6.422 7 N -0.332 5.332 8 C -0.059 4.059 9 C 0.094 3.906 10 C -0.566 4.566 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.704 3.296 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.066 4.066 19 C -0.090 4.090 20 H 0.095 0.905 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.192 4.192 25 C 0.059 3.941 26 H 0.086 0.914 27 O -0.366 6.366 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.237 -28.022 -0.322 28.051 hybrid contribution 0.429 0.698 0.188 0.840 sum 1.666 -27.324 -0.134 27.375 Atomic orbital electron populations 1.22505 0.88049 1.01768 1.00857 1.61937 1.07423 1.14078 1.43077 1.21804 1.00894 0.86639 0.96139 1.21632 1.02220 0.93712 0.99773 1.20361 0.80658 0.86925 0.82720 1.90665 1.41901 1.75997 1.33642 1.47842 1.54430 1.14718 1.16173 1.21650 0.95643 0.99974 0.88682 1.19654 0.95881 0.78009 0.97062 1.21333 1.02165 0.91589 1.41512 0.90868 1.24874 0.96798 0.96788 0.94681 1.69903 1.34426 1.04081 1.45290 0.86827 0.84641 0.78379 0.79704 1.19908 1.21085 1.19061 1.22115 1.01118 0.92442 0.90964 1.21142 0.98872 0.94395 0.94567 0.90478 1.21493 1.02350 0.94338 0.96914 1.21504 0.99924 0.96148 0.97875 1.21439 1.00650 0.98551 0.94625 1.22289 1.01846 0.96948 0.98149 1.21643 0.81818 0.92753 0.97850 0.91435 1.86492 1.17285 1.87414 1.45365 0.91667 0.91110 0.95561 0.90000 0.93929 0.89505 0.88923 0.93665 0.90693 0.92133 0.95282 0.94580 0.92590 0.89810 0.94895 0.92355 0.90936 0.92380 0.92177 0.92624 0.91385 0.91410 0.92018 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.21 60.06 0.55 0.72 16 2 N -0.54 -6.31 4.11 -242.91 -1.00 -7.31 16 3 C 0.07 1.07 4.24 -3.82 -0.02 1.05 16 4 C -0.13 -1.96 4.19 -27.88 -0.12 -2.08 16 5 C 0.51 10.45 7.67 -10.99 -0.08 10.36 16 6 O -0.54 -13.60 15.56 5.56 0.09 -13.52 16 7 N -0.60 -12.56 2.86 -182.96 -0.52 -13.08 16 8 C 0.08 1.30 10.24 59.85 0.61 1.92 16 9 C 0.21 5.36 4.23 -5.20 -0.02 5.34 16 10 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 11 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 14 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 15 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 18 C 0.06 0.68 4.29 -3.83 -0.02 0.66 16 19 C -0.07 -0.63 2.03 -90.62 -0.18 -0.82 16 20 H 0.08 0.66 6.70 -51.93 -0.35 0.31 16 21 C -0.11 -0.95 5.06 -26.73 -0.14 -1.08 16 22 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 23 C -0.12 -0.80 5.78 -26.73 -0.15 -0.95 16 24 C -0.15 -1.06 5.63 -26.76 -0.15 -1.21 16 25 C 0.12 1.00 3.08 -26.76 -0.08 0.92 16 26 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 27 O -0.56 -5.15 11.23 -35.23 -0.40 -5.54 16 28 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 29 H 0.07 0.71 6.22 -51.93 -0.32 0.39 16 30 H 0.03 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.08 1.29 7.81 -51.93 -0.41 0.88 16 32 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.09 1.17 5.69 -51.93 -0.30 0.87 16 34 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 37 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 38 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.08 1.05 7.23 -51.92 -0.38 0.67 16 42 H 0.03 0.37 7.99 -51.93 -0.42 -0.05 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.37 2.19 9.08 45.56 0.41 2.60 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -34.63 389.56 -8.83 -43.47 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.58 Total: 0.07 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.39 Total: 0.08 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.75 Total: -47.63 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.31 Total: -19.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.63 -8.83 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305793040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.087 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds