Wall clock time and date at job start Tue Mar 31 2020 10:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99806 * 2 1 4 4 C 1.53005 * 109.47057 * 66.04624 * 3 2 1 5 5 C 1.50695 * 109.47133 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99908 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99963 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00097 * 359.97438 * 7 5 4 9 9 C 1.46498 * 120.00236 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47454 * 89.99827 * 9 7 5 11 11 H 1.08000 * 119.99717 * 359.97438 * 10 9 7 12 12 C 1.37879 * 120.00126 * 180.02562 * 10 9 7 13 13 N 1.31520 * 119.99857 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 120.00201 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46978 * 89.99920 * 14 12 10 16 16 H 1.48499 * 109.47132 * 210.00188 * 14 12 10 17 17 H 1.48498 * 109.46728 * 330.00230 * 14 12 10 18 18 C 1.46892 * 111.00169 * 236.04882 * 2 1 3 19 19 C 1.53004 * 109.47356 * 287.51872 * 18 2 1 20 20 H 1.09004 * 109.46655 * 56.30422 * 19 18 2 21 21 C 1.52994 * 109.47319 * 176.30114 * 19 18 2 22 22 C 1.53004 * 109.47319 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.47062 * 300.00752 * 22 21 19 24 24 C 1.53003 * 109.47123 * 59.99506 * 23 22 21 25 25 C 1.52997 * 109.46987 * 296.30819 * 19 18 2 26 26 H 1.09000 * 109.47652 * 59.99667 * 25 19 18 27 27 O 1.42899 * 109.47016 * 299.99376 * 25 19 18 28 28 H 1.09000 * 109.46895 * 186.04701 * 1 2 3 29 29 H 1.08996 * 109.47622 * 306.04861 * 1 2 3 30 30 H 1.09003 * 109.46893 * 66.05396 * 1 2 3 31 31 H 1.08998 * 109.47088 * 186.04562 * 3 2 1 32 32 H 1.09003 * 109.47073 * 306.05060 * 3 2 1 33 33 H 1.09007 * 109.46718 * 300.00383 * 4 3 2 34 34 H 1.09003 * 109.47044 * 59.99778 * 4 3 2 35 35 H 1.09005 * 109.46876 * 90.00037 * 8 7 5 36 36 H 1.08996 * 109.47550 * 210.00241 * 8 7 5 37 37 H 1.09003 * 109.47273 * 330.00575 * 8 7 5 38 38 H 1.09002 * 109.47415 * 209.99575 * 9 7 5 39 39 H 1.09003 * 109.46964 * 329.99977 * 9 7 5 40 40 H 0.96996 * 119.99752 * 179.97438 * 13 12 10 41 41 H 1.09007 * 109.47288 * 167.52391 * 18 2 1 42 42 H 1.09002 * 109.47475 * 47.52318 * 18 2 1 43 43 H 1.09000 * 109.47669 * 300.00256 * 21 19 18 44 44 H 1.09004 * 109.47005 * 60.00523 * 21 19 18 45 45 H 1.09004 * 109.46655 * 60.00308 * 22 21 19 46 46 H 1.08996 * 109.47544 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.46566 * 179.97438 * 23 22 21 48 48 H 1.08994 * 109.47094 * 299.99341 * 23 22 21 49 49 H 1.08995 * 109.46788 * 60.00166 * 24 23 22 50 50 H 1.08999 * 109.46672 * 179.97438 * 24 23 22 51 51 H 0.96706 * 113.99568 * 180.02562 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 6 2.1708 3.4646 1.3181 6 8 2.7863 3.8779 0.3582 7 7 1.9702 4.2633 2.3849 8 6 1.2273 3.7639 3.5446 9 6 2.4941 5.6314 2.3845 10 6 1.4608 6.5650 1.8086 11 1 0.5091 6.1778 1.4757 12 6 1.7307 7.9132 1.7056 13 7 0.8290 8.7278 1.2025 14 14 3.3770 8.5827 2.2807 15 1 4.3432 8.5563 1.1533 16 1 3.2054 9.9801 2.7530 17 1 3.8912 7.7439 3.3930 18 6 1.9955 -0.7659 -1.1375 19 6 1.7729 -2.2598 -0.8934 20 1 0.7127 -2.4458 -0.7211 21 6 2.2371 -3.0514 -2.1176 22 6 2.0151 -4.5454 -1.8732 23 6 2.8167 -4.9861 -0.6467 24 6 2.3523 -4.1944 0.5775 25 6 2.5740 -2.7010 0.3332 26 1 2.2432 -2.1370 1.2053 27 8 3.9638 -2.4572 0.1073 28 1 -0.3633 -1.0220 0.1083 29 1 -0.3634 0.6047 0.8308 30 1 -0.3633 0.4171 -0.9393 31 1 3.0797 1.3445 -0.1082 32 1 1.5610 1.9274 -0.8309 33 1 0.5470 2.0844 1.4265 34 1 2.0657 1.5015 2.1492 35 1 1.9200 3.3035 4.2490 36 1 0.7121 4.5925 4.0305 37 1 0.4970 3.0240 3.2170 38 1 2.7260 5.9321 3.4063 39 1 3.3995 5.6736 1.7790 40 1 1.0188 9.6763 1.1304 41 1 3.0625 -0.5703 -1.2446 42 1 1.4778 -0.4655 -2.0486 43 1 1.6663 -2.7371 -2.9914 44 1 3.2972 -2.8655 -2.2899 45 1 0.9550 -4.7317 -1.7006 46 1 2.3462 -5.1094 -2.7451 47 1 2.6581 -6.0504 -0.4723 48 1 3.8766 -4.7999 -0.8192 49 1 1.2924 -4.3808 0.7500 50 1 2.9231 -4.5088 1.4513 51 1 4.5332 -2.7140 0.8455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305793040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:29 Heat of formation + Delta-G solvation = -122.954843 kcal Electronic energy + Delta-G solvation = -26918.419190 eV Core-core repulsion = 23237.033542 eV Total energy + Delta-G solvation = -3681.385648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.86119 -40.36340 -38.15943 -36.62628 -35.83875 -34.73247 -33.39359 -31.64375 -30.63245 -30.00930 -27.93180 -27.34782 -26.01181 -24.23910 -23.45055 -22.46411 -21.45815 -20.51360 -19.90614 -19.16201 -18.04891 -17.57969 -17.15320 -16.98931 -16.51217 -16.35570 -15.99067 -15.90580 -15.41558 -15.25240 -14.76889 -14.68641 -14.38968 -14.16893 -13.88011 -13.72210 -13.65463 -13.61355 -13.42018 -13.26214 -13.01319 -12.80981 -12.73406 -12.50627 -12.43649 -12.34053 -12.26419 -12.06941 -11.89314 -11.75684 -11.66784 -11.53366 -11.32315 -10.84643 -10.82299 -10.66841 -10.39826 -9.39586 -9.32502 -8.35564 -6.40626 1.31599 1.36013 1.44519 1.80230 2.27434 2.30099 2.94804 2.99083 3.57119 3.73978 3.81759 3.87965 3.96170 4.09573 4.10995 4.24245 4.33380 4.38652 4.41708 4.49893 4.55428 4.60182 4.62997 4.67666 4.68810 4.77847 4.78826 4.80872 4.84635 4.88512 4.98724 4.99377 5.00058 5.04122 5.06808 5.12263 5.18986 5.32163 5.35131 5.39419 5.44796 5.48799 5.61944 5.63369 6.01299 6.11991 6.22550 6.60327 6.70228 7.07152 7.20118 7.42235 8.81425 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002383 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.703573 B =11748.735706 C =11824.313636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.531 5.531 3 C 0.081 3.919 4 C -0.113 4.113 5 C 0.495 3.505 6 O -0.600 6.600 7 N -0.609 5.609 8 C 0.077 3.923 9 C 0.222 3.778 10 C -0.536 4.536 11 H 0.027 0.973 12 C 0.008 3.992 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.274 1.274 17 H -0.237 1.237 18 C 0.063 3.937 19 C -0.067 4.067 20 H 0.088 0.912 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.114 4.114 24 C -0.149 4.149 25 C 0.119 3.881 26 H 0.061 0.939 27 O -0.579 6.579 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.013 0.987 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -30.859 2.569 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.254 5.254 3 C -0.048 4.048 4 C -0.153 4.153 5 C 0.284 3.716 6 O -0.482 6.482 7 N -0.340 5.340 8 C -0.065 4.065 9 C 0.099 3.901 10 C -0.574 4.574 11 H 0.046 0.954 12 C -0.189 4.189 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.203 1.203 16 H -0.199 1.199 17 H -0.160 1.160 18 C -0.065 4.065 19 C -0.085 4.085 20 H 0.106 0.894 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.152 4.152 24 C -0.187 4.187 25 C 0.061 3.939 26 H 0.079 0.921 27 O -0.386 6.386 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.451 -30.474 1.939 30.570 hybrid contribution 0.275 1.411 -0.562 1.544 sum 1.726 -29.062 1.377 29.146 Atomic orbital electron populations 1.22618 0.86751 1.03389 1.00687 1.61984 1.08439 1.11836 1.43163 1.21613 0.99800 0.88078 0.95263 1.21553 1.03182 0.89834 1.00758 1.21406 0.79674 0.88884 0.81599 1.90633 1.44407 1.77497 1.35672 1.47988 1.54679 1.13267 1.18028 1.21984 0.96673 1.00428 0.87378 1.19338 0.93828 0.79723 0.97196 1.21560 1.01487 0.92778 1.41604 0.95449 1.25890 1.01208 0.97105 0.94734 1.70053 1.36999 1.04665 1.46863 0.85687 0.78853 0.78390 0.79847 1.20344 1.19862 1.15994 1.22111 0.99763 0.94014 0.90592 1.21133 0.99671 0.92516 0.95230 0.89383 1.21458 1.01197 0.95457 0.96786 1.21502 1.00544 0.94923 0.98301 1.21432 0.99958 0.99253 0.94537 1.22239 1.02494 0.95456 0.98461 1.21626 0.81405 0.93891 0.97016 0.92067 1.86471 1.17935 1.87730 1.46485 0.89296 0.90419 0.96458 0.91754 0.96821 0.87408 0.85730 0.90097 0.91664 0.89101 0.93063 0.96530 0.92259 0.91812 0.95540 0.92313 0.92675 0.91489 0.91769 0.91487 0.92415 0.90650 0.90943 0.76668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.21 127.69 1.18 1.42 16 2 N -0.53 -11.76 4.11 -922.43 -3.79 -15.55 16 3 C 0.08 2.37 4.24 86.30 0.37 2.74 16 4 C -0.11 -3.15 4.19 29.85 0.12 -3.03 16 5 C 0.50 20.37 7.67 87.66 0.67 21.05 16 6 O -0.60 -31.10 15.56 -3.04 -0.05 -31.15 16 7 N -0.61 -24.94 2.86 -851.14 -2.43 -27.37 16 8 C 0.08 2.16 10.24 127.77 1.31 3.47 16 9 C 0.22 11.01 4.23 85.63 0.36 11.38 16 10 C -0.54 -32.11 9.94 25.60 0.25 -31.86 16 11 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 12 C 0.01 0.51 5.47 84.65 0.46 0.97 16 13 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 14 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 18 C 0.06 1.38 4.29 86.31 0.37 1.75 16 19 C -0.07 -1.10 2.03 -10.80 -0.02 -1.12 16 20 H 0.09 1.27 6.70 -2.38 -0.02 1.26 16 21 C -0.11 -1.77 5.06 30.59 0.15 -1.61 16 22 C -0.12 -1.44 5.92 30.60 0.18 -1.26 16 23 C -0.11 -1.35 5.78 30.60 0.18 -1.17 16 24 C -0.15 -1.66 5.63 30.58 0.17 -1.49 16 25 C 0.12 1.81 3.08 30.58 0.09 1.90 16 26 H 0.06 1.01 7.71 -2.39 -0.02 0.99 16 27 O -0.58 -10.12 11.23 -148.98 -1.67 -11.79 16 28 H 0.09 1.25 6.74 -2.39 -0.02 1.23 16 29 H 0.08 1.34 6.22 -2.39 -0.01 1.32 16 30 H 0.02 0.35 8.07 -2.39 -0.02 0.33 16 31 H 0.06 2.09 7.81 -2.39 -0.02 2.08 16 32 H 0.01 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.11 2.59 5.69 -2.38 -0.01 2.58 16 34 H 0.12 2.74 8.11 -2.39 -0.02 2.72 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 37 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 38 H 0.05 2.32 7.13 -2.39 -0.02 2.30 16 39 H 0.02 0.89 6.85 -2.39 -0.02 0.87 16 40 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.06 1.65 7.23 -2.38 -0.02 1.63 16 42 H 0.03 0.60 7.99 -2.39 -0.02 0.58 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.07 7.68 -2.38 -0.02 1.05 16 45 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.81 7.68 -2.39 -0.02 0.79 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.38 4.08 9.08 -74.05 -0.67 3.41 16 Total: -1.00 -79.44 389.56 0.26 -79.18 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.17 Total: 16.82 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.85 Total: 3.13 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -5.92 Total: -103.23 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.72 Total: -42.94 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -79.44 0.26 -79.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305793040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.780 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds