Wall clock time and date at job start Tue Mar 31 2020 11:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48508 * 109.46738 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47153 * 299.99685 * 3 2 1 6 6 H 1.48504 * 109.47325 * 60.00092 * 3 2 1 7 7 C 1.37871 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99863 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.76199 * 103.00161 * 180.02562 * 10 9 7 12 12 N 1.31418 * 126.33832 * 0.68885 * 11 10 9 13 13 N 1.28651 * 110.29646 * 179.97438 * 12 11 10 14 14 C 1.32025 * 109.68903 * 359.50448 * 13 12 11 15 15 C 1.40947 * 133.50400 * 180.02562 * 14 13 12 16 16 C 1.35907 * 119.26003 * 179.74353 * 15 14 13 17 17 C 1.40797 * 119.86476 * 0.25852 * 16 15 14 18 18 Br 1.89100 * 119.79570 * 180.02562 * 17 16 15 19 19 C 1.34888 * 120.41385 * 359.97438 * 17 16 15 20 20 N 1.36349 * 126.33854 * 179.97438 * 11 10 9 21 21 H 0.97005 * 119.99876 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47016 * 60.00680 * 9 7 2 23 23 H 1.08997 * 109.47305 * 300.00278 * 9 7 2 24 24 H 1.08002 * 120.37269 * 0.02739 * 15 14 13 25 25 H 1.08000 * 120.06783 * 180.27487 * 16 15 14 26 26 H 1.07998 * 119.77397 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3825 -5.2948 0.0034 12 7 0.0684 -5.2919 -0.0097 13 7 -0.3807 -6.4975 -0.0054 14 6 0.6290 -7.3482 0.0001 15 6 0.7122 -8.7552 0.0059 16 6 1.9351 -9.3482 0.0056 17 6 3.0987 -8.5556 0.0051 18 35 4.7992 -9.3829 0.0040 19 6 3.0082 -7.2098 0.0044 20 7 1.7855 -6.5974 0.0039 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 -0.1857 -9.3553 0.0058 25 1 2.0141 -10.4254 0.0054 26 1 3.9075 -6.6118 0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334373253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:46 Heat of formation + Delta-G solvation = 105.387542 kcal Electronic energy + Delta-G solvation = -14884.035460 eV Core-core repulsion = 12136.994447 eV Total energy + Delta-G solvation = -2747.041013 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 312.958 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.31728 -38.31645 -34.11950 -33.28467 -32.60302 -30.04729 -29.19899 -28.65641 -24.36657 -23.65803 -22.92320 -22.61426 -18.71495 -17.51033 -16.75177 -16.55182 -16.28047 -15.53950 -15.10608 -14.71407 -13.36472 -13.22924 -12.91330 -12.52752 -12.50033 -12.41548 -11.61900 -11.56432 -11.11119 -10.98237 -10.94843 -10.82432 -10.69899 -10.40392 -9.77531 -9.57395 -9.36914 -8.81221 -8.57910 -6.94130 -6.29152 -4.38272 0.34977 0.86377 0.94807 1.53195 2.62887 2.64355 3.16868 3.19459 3.23677 3.27168 3.35231 3.98592 4.25487 4.30666 4.37654 4.77142 4.95227 5.07584 5.34245 5.51194 5.68596 5.92214 6.02472 6.62419 6.96677 7.07259 7.58190 7.80905 8.58003 8.62761 9.26019 10.81183 Molecular weight = 312.96amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.003466 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.139617 B = 8075.517314 C = 9138.504739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.082 3.918 10 S -0.049 6.049 11 C 0.161 3.839 12 N -0.248 5.248 13 N -0.271 5.271 14 C 0.177 3.823 15 C -0.058 4.058 16 C -0.083 4.083 17 C -0.125 4.125 18 Br -0.014 7.014 19 C 0.128 3.872 20 N -0.389 5.389 21 H 0.269 0.731 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.163 0.837 25 H 0.153 0.847 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.437 -21.417 0.028 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.088 0.912 9 C -0.065 4.065 10 S 0.182 5.818 11 C -0.208 4.208 12 N -0.091 5.091 13 N -0.115 5.115 14 C -0.076 4.076 15 C -0.080 4.080 16 C -0.109 4.109 17 C -0.210 4.210 18 Br 0.071 6.929 19 C 0.002 3.998 20 N -0.073 5.073 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.181 0.819 25 H 0.170 0.830 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.478 -20.808 0.016 22.865 hybrid contribution -0.086 0.481 0.010 0.489 sum 9.392 -20.326 0.027 22.391 Atomic orbital electron populations 1.69989 1.06133 1.27624 1.47930 1.24946 0.95011 0.99231 0.94233 0.86240 0.79915 0.82215 0.77936 1.19350 1.20542 1.20547 1.20568 0.93419 0.88187 1.54556 0.91208 1.21469 0.93870 0.88537 1.02624 1.85422 1.12927 0.92910 1.90585 1.27474 0.96443 0.88313 1.08548 1.74861 1.04411 1.13073 1.16743 1.74704 1.22764 0.94994 1.19017 1.22449 0.82575 0.94970 1.07606 1.20197 0.99224 0.88347 1.00225 1.20940 0.89655 1.00739 0.99517 1.21126 0.93970 0.93131 1.12737 1.96780 1.18552 1.79756 1.97852 1.21610 0.88212 0.92849 0.97146 1.43743 1.07321 1.06732 1.49511 0.92168 0.92743 0.92771 0.81937 0.82960 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.29 55.43 0.74 -24.46 15 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 15 3 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 7 C -0.53 -14.13 9.13 -34.44 -0.31 -14.45 15 8 H 0.07 1.81 7.71 -52.48 -0.40 1.41 15 9 C 0.08 2.10 5.35 36.01 0.19 2.29 15 10 S -0.05 -1.01 22.03 -107.50 -2.37 -3.38 15 11 C 0.16 3.26 8.23 -88.40 -0.73 2.53 15 12 N -0.25 -5.56 11.80 30.66 0.36 -5.20 15 13 N -0.27 -5.45 12.28 31.23 0.38 -5.07 15 14 C 0.18 2.90 7.93 -155.73 -1.24 1.67 15 15 C -0.06 -0.64 10.11 -39.39 -0.40 -1.04 15 16 C -0.08 -0.76 9.81 -39.45 -0.39 -1.14 15 17 C -0.13 -1.30 6.19 -39.80 -0.25 -1.54 15 18 Br -0.01 -0.11 33.68 -68.01 -2.29 -2.41 15 19 C 0.13 1.63 10.66 -16.55 -0.18 1.45 15 20 N -0.39 -6.48 2.98 -62.67 -0.19 -6.66 15 21 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.05 1.49 8.14 -51.92 -0.42 1.07 15 23 H 0.05 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.16 1.32 8.06 -52.49 -0.42 0.90 15 25 H 0.15 0.90 8.06 -52.49 -0.42 0.47 15 26 H 0.18 1.98 8.06 -52.49 -0.42 1.55 15 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -30.51 276.27 -9.26 -39.78 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -1.65 Total: -3.90 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.39 Total: -8.38 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 1.29 Total: -41.39 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.37 Total: -3.38 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -2.29 Total: -2.41 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.51 -9.26 -39.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334373253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.165 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds