Wall clock time and date at job start Tue Mar 31 2020 11:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48508 * 109.46738 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47153 * 299.99685 * 3 2 1 6 6 H 1.48504 * 109.47325 * 60.00092 * 3 2 1 7 7 C 1.37871 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99863 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.76199 * 103.00161 * 180.02562 * 10 9 7 12 12 N 1.31418 * 126.33832 * 0.68885 * 11 10 9 13 13 N 1.28651 * 110.29646 * 179.97438 * 12 11 10 14 14 C 1.32025 * 109.68903 * 359.50448 * 13 12 11 15 15 C 1.40947 * 133.50400 * 180.02562 * 14 13 12 16 16 C 1.35907 * 119.26003 * 179.74353 * 15 14 13 17 17 C 1.40797 * 119.86476 * 0.25852 * 16 15 14 18 18 Br 1.89100 * 119.79570 * 180.02562 * 17 16 15 19 19 C 1.34888 * 120.41385 * 359.97438 * 17 16 15 20 20 N 1.36349 * 126.33854 * 179.97438 * 11 10 9 21 21 H 0.97005 * 119.99876 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47016 * 60.00680 * 9 7 2 23 23 H 1.08997 * 109.47305 * 300.00278 * 9 7 2 24 24 H 1.08002 * 120.37269 * 0.02739 * 15 14 13 25 25 H 1.08000 * 120.06783 * 180.27487 * 16 15 14 26 26 H 1.07998 * 119.77397 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3825 -5.2948 0.0034 12 7 0.0684 -5.2919 -0.0097 13 7 -0.3807 -6.4975 -0.0054 14 6 0.6290 -7.3482 0.0001 15 6 0.7122 -8.7552 0.0059 16 6 1.9351 -9.3482 0.0056 17 6 3.0987 -8.5556 0.0051 18 35 4.7992 -9.3829 0.0040 19 6 3.0082 -7.2098 0.0044 20 7 1.7855 -6.5974 0.0039 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 -0.1857 -9.3553 0.0058 25 1 2.0141 -10.4254 0.0054 26 1 3.9075 -6.6118 0.0045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334373253.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:46 Heat of formation + Delta-G solvation = 88.193081 kcal Electronic energy + Delta-G solvation = -14884.781068 eV Core-core repulsion = 12136.994447 eV Total energy + Delta-G solvation = -2747.786621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 312.958 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.64126 -39.45139 -35.40391 -35.22972 -33.61396 -31.30316 -30.70373 -30.25458 -25.64731 -25.17596 -24.50227 -23.94582 -20.01298 -18.75402 -18.52225 -17.89849 -17.74127 -16.79034 -16.43091 -16.03767 -15.13491 -14.66823 -14.44468 -14.22388 -13.82054 -13.55982 -12.84656 -12.84107 -12.73849 -12.73556 -12.50550 -12.13768 -12.03240 -11.66377 -11.51814 -11.25050 -10.84205 -10.64127 -9.85080 -8.50499 -8.35842 -6.54047 -0.66378 -0.26528 -0.15135 0.18078 1.27238 1.32154 1.42039 1.43243 1.48831 1.59299 2.04681 2.35432 2.90895 2.99252 3.25610 3.44558 3.63623 3.91359 4.23637 4.60503 4.70312 4.76281 4.81805 4.94093 5.11567 5.44830 5.49784 5.73726 6.54817 7.15922 7.17117 8.76594 Molecular weight = 312.96amu Principal moments of inertia in cm(-1) A = 0.025964 B = 0.003466 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.139617 B = 8075.517314 C = 9138.504739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.082 3.918 10 S -0.006 6.006 11 C 0.130 3.870 12 N -0.292 5.292 13 N -0.320 5.320 14 C 0.188 3.812 15 C -0.070 4.070 16 C -0.049 4.049 17 C -0.108 4.108 18 Br 0.018 6.982 19 C 0.096 3.904 20 N -0.385 5.385 21 H 0.272 0.728 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.197 0.803 25 H 0.201 0.799 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.917 -24.043 0.035 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.097 0.903 9 C -0.066 4.066 10 S 0.224 5.776 11 C -0.240 4.240 12 N -0.134 5.134 13 N -0.164 5.164 14 C -0.065 4.065 15 C -0.091 4.091 16 C -0.074 4.074 17 C -0.192 4.192 18 Br 0.103 6.897 19 C -0.028 4.028 20 N -0.068 5.068 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.214 0.786 25 H 0.218 0.782 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.982 -23.482 0.023 26.363 hybrid contribution -0.729 0.879 0.008 1.142 sum 11.253 -22.603 0.031 25.249 Atomic orbital electron populations 1.70130 1.08095 1.28829 1.48958 1.26021 0.95845 1.03365 0.93368 0.85099 0.78991 0.77040 0.78104 1.17908 1.19936 1.19945 1.20941 0.93898 0.88996 1.54390 0.90330 1.21020 0.94652 0.91494 0.99425 1.84741 1.10175 0.91051 1.91613 1.27116 0.96071 0.89517 1.11336 1.74707 1.05930 1.14978 1.17808 1.74569 1.24396 0.94813 1.22612 1.23257 0.81674 0.96621 1.04942 1.20729 1.01679 0.85777 1.00952 1.21555 0.88019 1.02841 0.95031 1.21548 0.96041 0.92411 1.09208 1.96859 1.16599 1.78667 1.97569 1.22056 0.87236 0.94167 0.99391 1.43759 1.08742 1.05471 1.48817 0.91888 0.96081 0.96102 0.78560 0.78182 0.79357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.06 13.29 21.45 0.28 -54.78 15 2 C 0.02 0.89 5.46 84.65 0.46 1.35 15 3 Si 0.99 42.50 29.54 68.60 2.03 44.52 15 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.54 -30.10 9.13 25.60 0.23 -29.86 15 8 H 0.08 4.11 7.71 -2.91 -0.02 4.09 15 9 C 0.08 4.50 5.35 71.24 0.38 4.88 15 10 S -0.01 -0.24 22.03 -56.49 -1.24 -1.49 15 11 C 0.13 5.50 8.23 179.57 1.48 6.98 15 12 N -0.29 -13.93 11.80 -56.90 -0.67 -14.61 15 13 N -0.32 -13.39 12.28 -55.12 -0.68 -14.07 15 14 C 0.19 6.06 7.93 134.00 1.06 7.12 15 15 C -0.07 -1.32 10.11 22.39 0.23 -1.09 15 16 C -0.05 -0.65 9.81 22.35 0.22 -0.43 15 17 C -0.11 -1.83 6.19 22.13 0.14 -1.69 15 18 Br 0.02 0.23 33.68 -20.37 -0.69 -0.45 15 19 C 0.10 2.28 10.66 83.16 0.89 3.17 15 20 N -0.38 -12.75 2.98 -352.20 -1.05 -13.80 15 21 H 0.27 15.07 8.31 -92.70 -0.77 14.30 15 22 H 0.02 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.02 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.20 2.38 8.06 -2.91 -0.02 2.36 15 25 H 0.20 0.91 8.06 -2.91 -0.02 0.89 15 26 H 0.19 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -71.83 276.27 4.29 -67.54 By element: Atomic # 1 Polarization: -4.52 SS G_CDS: 1.22 Total: -3.30 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.09 Total: -9.58 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.11 Total: -97.25 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.24 Total: -1.49 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.69 Total: -0.45 kcal Total: -71.83 4.29 -67.54 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334373253.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.737 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds