Wall clock time and date at job start Tue Mar 31 2020 10:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 3 8 8 N 1.46901 * 109.47859 * 179.97438 * 7 6 5 9 9 C 1.46848 * 110.99361 * 45.78870 * 8 7 6 10 10 C 1.53045 * 109.52212 * 185.84617 * 9 8 7 11 11 C 1.53126 * 109.27267 * 300.82193 * 10 9 8 12 12 N 1.46902 * 109.57091 * 177.59130 * 11 10 9 13 13 C 1.46903 * 110.99727 * 85.28525 * 12 11 10 14 14 C 1.53008 * 109.46856 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47102 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.46969 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00240 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47434 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47375 * 120.00401 * 20 18 16 23 23 H 1.48504 * 109.47291 * 239.99936 * 20 18 16 24 24 C 1.53111 * 109.16377 * 57.65554 * 11 10 9 25 25 C 1.46844 * 111.00526 * 170.00090 * 8 7 6 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 28 28 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 30 30 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 6 5 3 32 32 H 1.08998 * 109.47533 * 59.99628 * 6 5 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 35 35 H 1.09000 * 109.46861 * 305.85669 * 9 8 7 36 36 H 1.08996 * 109.46450 * 65.82852 * 9 8 7 37 37 H 1.08996 * 109.50378 * 180.88718 * 10 9 8 38 38 H 1.08993 * 109.50521 * 60.75626 * 10 9 8 39 39 H 1.09003 * 109.52363 * 297.74473 * 11 10 9 40 40 H 1.00892 * 111.00374 * 321.33080 * 12 11 10 41 41 H 1.08996 * 109.47356 * 299.99269 * 13 12 11 42 42 H 1.08997 * 109.47211 * 60.00230 * 13 12 11 43 43 H 1.09004 * 109.46904 * 299.99668 * 14 13 12 44 44 H 1.08994 * 109.47239 * 59.99448 * 14 13 12 45 45 H 1.08998 * 109.46415 * 299.99700 * 15 14 13 46 46 H 1.08996 * 109.47183 * 59.99587 * 15 14 13 47 47 H 0.97005 * 120.00076 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.50713 * 182.40312 * 24 11 10 49 49 H 1.08998 * 109.50742 * 62.28519 * 24 11 10 50 50 H 1.09001 * 109.45873 * 294.17853 * 25 8 7 51 51 H 1.08996 * 109.45873 * 54.15658 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5279 2.8222 -0.0011 8 7 5.9445 4.2309 -0.0022 9 6 5.1769 5.0073 0.9798 10 6 5.5323 6.4903 0.8500 11 6 7.0339 6.6728 1.0881 12 7 7.3924 8.0861 0.9082 13 6 7.1751 8.8459 2.1465 14 6 7.5592 10.3097 1.9207 15 6 7.3336 11.1011 3.2106 16 6 7.7125 12.5425 2.9883 17 1 8.0774 12.8624 2.0234 18 6 7.5924 13.4533 4.0164 19 7 7.1476 13.0640 5.1912 20 14 8.0628 15.2400 3.7411 21 1 8.5313 15.4189 2.3434 22 1 6.8805 16.1058 3.9810 23 1 9.1502 15.6160 4.6801 24 6 7.8098 5.8163 0.0838 25 6 7.3884 4.3530 0.2359 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.9563 0.7806 0.8892 30 1 3.9557 0.7809 -0.8908 31 1 3.6100 3.2360 -0.8911 32 1 3.6107 3.2365 0.8888 33 1 5.9176 2.3284 0.8891 34 1 5.9177 2.3278 -0.8909 35 1 4.1109 4.8721 0.7968 36 1 5.4192 4.6625 1.9850 37 1 4.9742 7.0644 1.5895 38 1 5.2775 6.8393 -0.1507 39 1 7.2825 6.3602 2.1023 40 1 6.8816 8.4937 0.1395 41 1 6.1245 8.7854 2.4304 42 1 7.7913 8.4276 2.9424 43 1 8.6100 10.3699 1.6371 44 1 6.9435 10.7283 1.1247 45 1 6.2829 11.0408 3.4946 46 1 7.9496 10.6823 4.0063 47 1 7.0628 13.7049 5.9144 48 1 8.8787 5.9089 0.2759 49 1 7.5909 6.1547 -0.9289 50 1 7.6203 4.0111 1.2446 51 1 7.9286 3.7425 -0.4877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342481978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:40 Heat of formation + Delta-G solvation = -108.189780 kcal Electronic energy + Delta-G solvation = -25381.529583 eV Core-core repulsion = 21700.784196 eV Total energy + Delta-G solvation = -3680.745387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91253 -39.54396 -37.19402 -36.57814 -34.62521 -33.38715 -31.91602 -30.98553 -30.03925 -28.53788 -26.79341 -25.63853 -23.83394 -23.19341 -22.10640 -21.49082 -20.72132 -20.36131 -19.58065 -18.03201 -17.17099 -17.15304 -16.30804 -16.11263 -15.72470 -15.13405 -15.01573 -14.73877 -14.36830 -14.34166 -14.11871 -13.80693 -13.70163 -13.48544 -12.96836 -12.70735 -12.49650 -12.46808 -12.29233 -12.05400 -11.86664 -11.67584 -11.46467 -11.32278 -11.28454 -11.18120 -11.09045 -10.90674 -10.85875 -10.61695 -10.54361 -10.48718 -10.31629 -9.65239 -9.28114 -8.99812 -8.54326 -8.31362 -8.04935 -5.96346 -3.98159 1.76228 2.23594 3.33757 3.41000 3.45843 3.61448 4.20798 4.35680 4.41649 4.48110 4.51255 4.64126 4.71320 4.73006 4.79511 4.87176 4.97421 4.99615 5.08178 5.11464 5.15009 5.25462 5.30362 5.39554 5.45261 5.56117 5.58133 5.67077 5.73284 5.79354 5.82125 5.89628 5.93666 5.97903 6.02079 6.20912 6.27942 6.38010 6.77315 6.83831 6.84465 6.88214 7.18641 7.29091 7.42675 7.70718 7.73335 7.88160 8.04493 8.48114 9.09388 9.65756 11.15155 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.001729 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.840826 B =16193.277080 C =17148.228872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.504 6.504 5 C -0.112 4.112 6 C -0.116 4.116 7 C 0.057 3.943 8 N -0.537 5.537 9 C 0.052 3.948 10 C -0.147 4.147 11 C 0.086 3.914 12 N -0.686 5.686 13 C 0.060 3.940 14 C -0.107 4.107 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.103 4.103 25 C 0.057 3.943 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.338 0.662 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.013 0.987 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.032 0.968 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 -30.569 -11.850 33.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.391 6.391 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.071 4.071 8 N -0.262 5.262 9 C -0.076 4.076 10 C -0.186 4.186 11 C -0.025 4.025 12 N -0.315 5.315 13 C -0.069 4.069 14 C -0.145 4.145 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.141 4.141 25 C -0.071 4.071 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.156 0.844 41 H 0.042 0.958 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.032 0.968 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.051 0.949 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.728 -30.093 -12.006 33.309 hybrid contribution -0.904 0.744 0.872 1.460 sum -8.633 -29.349 -11.134 32.555 Atomic orbital electron populations 1.23279 0.76156 1.03752 1.02710 1.86501 1.23638 1.33646 1.84196 1.23862 0.92351 0.81309 0.72335 1.90707 1.67282 1.36308 1.44784 1.21374 0.87326 1.00253 1.06027 1.21624 0.95415 0.93518 1.04766 1.22078 0.94468 0.89514 1.01063 1.61999 1.04700 1.09198 1.50268 1.22176 0.98648 0.93733 0.93021 1.22346 0.98040 0.95574 1.02638 1.21616 0.92224 0.89637 0.99018 1.60651 1.62021 1.01190 1.07647 1.22140 0.98367 0.95442 0.90941 1.21624 1.00613 0.91639 1.00636 1.19072 0.96868 0.94184 0.91511 1.21308 1.43059 0.93842 0.97364 0.92604 1.25034 0.95416 0.98900 0.95235 1.69979 1.46861 1.34511 1.02297 0.86540 0.78101 0.85146 0.78244 1.19709 1.21083 1.21037 1.21549 0.99986 0.92443 1.00154 1.22113 0.87575 0.97889 0.99505 0.88042 0.91811 0.91801 0.87613 0.87382 0.89871 0.90462 0.94664 0.90371 0.90033 0.94973 0.91458 0.90923 0.91131 0.84382 0.95825 0.91715 0.92601 0.93676 0.96839 0.96623 0.93137 0.90838 0.91091 0.94932 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.68 10.56 -39.26 -0.41 -3.09 16 3 C 0.46 3.75 7.96 36.01 0.29 4.04 16 4 O -0.50 -5.80 15.73 -18.75 -0.29 -6.10 16 5 C -0.11 -0.58 5.81 -27.88 -0.16 -0.74 16 6 C -0.12 -0.81 3.75 -26.74 -0.10 -0.91 16 7 C 0.06 0.39 5.27 -3.83 -0.02 0.37 16 8 N -0.54 -4.96 4.81 -234.67 -1.13 -6.09 16 9 C 0.05 0.53 4.85 -3.83 -0.02 0.51 16 10 C -0.15 -1.69 5.35 -26.64 -0.14 -1.84 16 11 C 0.09 1.07 2.53 -67.59 -0.17 0.90 16 12 N -0.69 -10.19 6.26 -106.59 -0.67 -10.86 16 13 C 0.06 1.06 5.49 -3.82 -0.02 1.04 16 14 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 C -0.10 -1.11 5.70 -26.65 -0.15 -1.26 16 25 C 0.06 0.52 5.43 -3.83 -0.02 0.50 16 26 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.08 0.64 6.17 -51.93 -0.32 0.32 16 33 H 0.04 0.22 8.08 -51.93 -0.42 -0.19 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.84 7.55 -51.93 -0.39 0.44 16 38 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.07 0.94 7.80 -51.93 -0.41 0.54 16 40 H 0.34 4.82 8.45 -39.30 -0.33 4.49 16 41 H 0.02 0.42 7.51 -51.93 -0.39 0.03 16 42 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -32.97 402.92 -10.57 -43.54 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -9.70 Total: -1.81 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.15 Total: -11.98 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -1.06 Total: -43.67 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.71 Total: -9.19 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.97 -10.57 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342481978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.651 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds