Wall clock time and date at job start Tue Mar 31 2020 10:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47212 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 3 8 8 N 1.46901 * 109.47859 * 179.97438 * 7 6 5 9 9 C 1.46848 * 110.99361 * 45.78870 * 8 7 6 10 10 C 1.53045 * 109.52212 * 185.84617 * 9 8 7 11 11 C 1.53126 * 109.27267 * 300.82193 * 10 9 8 12 12 N 1.46902 * 109.57091 * 177.59130 * 11 10 9 13 13 C 1.46903 * 110.99727 * 85.28525 * 12 11 10 14 14 C 1.53008 * 109.46856 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47102 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.46969 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00240 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00086 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99996 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47434 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47375 * 120.00401 * 20 18 16 23 23 H 1.48504 * 109.47291 * 239.99936 * 20 18 16 24 24 C 1.53111 * 109.16377 * 57.65554 * 11 10 9 25 25 C 1.46844 * 111.00526 * 170.00090 * 8 7 6 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 28 28 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 30 30 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 31 31 H 1.09002 * 109.47153 * 299.99998 * 6 5 3 32 32 H 1.08998 * 109.47533 * 59.99628 * 6 5 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 34 34 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 35 35 H 1.09000 * 109.46861 * 305.85669 * 9 8 7 36 36 H 1.08996 * 109.46450 * 65.82852 * 9 8 7 37 37 H 1.08996 * 109.50378 * 180.88718 * 10 9 8 38 38 H 1.08993 * 109.50521 * 60.75626 * 10 9 8 39 39 H 1.09003 * 109.52363 * 297.74473 * 11 10 9 40 40 H 1.00892 * 111.00374 * 321.33080 * 12 11 10 41 41 H 1.08996 * 109.47356 * 299.99269 * 13 12 11 42 42 H 1.08997 * 109.47211 * 60.00230 * 13 12 11 43 43 H 1.09004 * 109.46904 * 299.99668 * 14 13 12 44 44 H 1.08994 * 109.47239 * 59.99448 * 14 13 12 45 45 H 1.08998 * 109.46415 * 299.99700 * 15 14 13 46 46 H 1.08996 * 109.47183 * 59.99587 * 15 14 13 47 47 H 0.97005 * 120.00076 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.50713 * 182.40312 * 24 11 10 49 49 H 1.08998 * 109.50742 * 62.28519 * 24 11 10 50 50 H 1.09001 * 109.45873 * 294.17853 * 25 8 7 51 51 H 1.08996 * 109.45873 * 54.15658 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 6 5.5279 2.8222 -0.0011 8 7 5.9445 4.2309 -0.0022 9 6 5.1769 5.0073 0.9798 10 6 5.5323 6.4903 0.8500 11 6 7.0339 6.6728 1.0881 12 7 7.3924 8.0861 0.9082 13 6 7.1751 8.8459 2.1465 14 6 7.5592 10.3097 1.9207 15 6 7.3336 11.1011 3.2106 16 6 7.7125 12.5425 2.9883 17 1 8.0774 12.8624 2.0234 18 6 7.5924 13.4533 4.0164 19 7 7.1476 13.0640 5.1912 20 14 8.0628 15.2400 3.7411 21 1 8.5313 15.4189 2.3434 22 1 6.8805 16.1058 3.9810 23 1 9.1502 15.6160 4.6801 24 6 7.8098 5.8163 0.0838 25 6 7.3884 4.3530 0.2359 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.9563 0.7806 0.8892 30 1 3.9557 0.7809 -0.8908 31 1 3.6100 3.2360 -0.8911 32 1 3.6107 3.2365 0.8888 33 1 5.9176 2.3284 0.8891 34 1 5.9177 2.3278 -0.8909 35 1 4.1109 4.8721 0.7968 36 1 5.4192 4.6625 1.9850 37 1 4.9742 7.0644 1.5895 38 1 5.2775 6.8393 -0.1507 39 1 7.2825 6.3602 2.1023 40 1 6.8816 8.4937 0.1395 41 1 6.1245 8.7854 2.4304 42 1 7.7913 8.4276 2.9424 43 1 8.6100 10.3699 1.6371 44 1 6.9435 10.7283 1.1247 45 1 6.2829 11.0408 3.4946 46 1 7.9496 10.6823 4.0063 47 1 7.0628 13.7049 5.9144 48 1 8.8787 5.9089 0.2759 49 1 7.5909 6.1547 -0.9289 50 1 7.6203 4.0111 1.2446 51 1 7.9286 3.7425 -0.4877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342481978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:39 Heat of formation + Delta-G solvation = -129.604672 kcal Electronic energy + Delta-G solvation = -25382.458202 eV Core-core repulsion = 21700.784196 eV Total energy + Delta-G solvation = -3681.674006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52694 -40.37996 -37.99008 -37.52627 -35.98144 -34.82275 -33.40347 -31.81015 -31.36906 -29.19289 -28.03888 -26.79521 -24.83252 -24.39667 -23.34354 -22.29907 -22.01642 -21.23748 -20.66902 -18.63668 -18.48999 -17.77189 -17.73651 -16.98591 -16.61725 -16.42662 -16.15223 -15.87918 -15.68431 -15.38408 -14.95046 -14.75028 -14.56021 -14.30518 -14.23536 -13.90941 -13.60243 -13.42366 -13.31559 -13.02847 -13.00835 -12.82816 -12.60374 -12.47964 -12.41200 -12.28376 -12.15027 -12.00554 -11.89320 -11.79494 -11.59502 -11.56864 -11.55316 -11.33667 -11.27781 -10.96600 -10.56742 -9.30801 -9.21244 -8.20936 -6.32103 1.16004 1.39676 1.39995 1.53901 1.75596 2.40641 2.94222 3.12130 3.21054 3.68863 3.80099 3.85168 4.01200 4.03553 4.10703 4.23005 4.26924 4.29235 4.32265 4.34830 4.41407 4.47556 4.51916 4.60639 4.63670 4.65151 4.70254 4.70974 4.74879 4.80409 4.89606 4.95802 5.02804 5.08264 5.13791 5.17452 5.20632 5.24816 5.29466 5.39191 5.40353 5.52076 5.74161 5.84956 6.10205 6.13525 6.19215 6.27198 6.50776 6.70287 6.84944 7.37262 8.91224 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.001729 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.840826 B =16193.277080 C =17148.228872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.457 3.543 4 O -0.546 6.546 5 C -0.104 4.104 6 C -0.110 4.110 7 C 0.059 3.941 8 N -0.546 5.546 9 C 0.059 3.941 10 C -0.142 4.142 11 C 0.086 3.914 12 N -0.685 5.685 13 C 0.074 3.926 14 C -0.092 4.092 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.097 4.097 25 C 0.061 3.939 26 H 0.131 0.869 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.343 0.657 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.049 0.951 45 H -0.010 1.010 46 H -0.009 1.009 47 H 0.263 0.737 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.034 0.966 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -31.918 -13.178 35.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.302 3.698 4 O -0.436 6.436 5 C -0.142 4.142 6 C -0.147 4.147 7 C -0.068 4.068 8 N -0.272 5.272 9 C -0.070 4.070 10 C -0.181 4.181 11 C -0.024 4.024 12 N -0.315 5.315 13 C -0.055 4.055 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.135 4.135 25 C -0.067 4.067 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.162 0.838 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.052 0.948 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.949 -31.482 -13.352 34.896 hybrid contribution -1.195 1.100 1.293 2.076 sum -8.144 -30.383 -12.060 33.688 Atomic orbital electron populations 1.23501 0.75215 1.05590 1.02259 1.86502 1.24695 1.33195 1.83777 1.24495 0.93490 0.80870 0.70976 1.90693 1.68396 1.37619 1.46940 1.21433 0.85167 0.99273 1.08308 1.21504 0.95587 0.94608 1.03045 1.22136 0.94070 0.88143 1.02449 1.61996 1.04682 1.10697 1.49776 1.22061 0.98860 0.92768 0.93303 1.22258 0.97149 0.96736 1.01964 1.21674 0.93150 0.88251 0.99299 1.60609 1.62340 1.02217 1.06299 1.21821 0.97874 0.93608 0.92187 1.21378 1.00529 0.93256 0.97867 1.18980 0.94697 0.94331 0.93321 1.21736 1.43407 0.95208 0.97749 0.92211 1.26011 0.95088 1.04069 0.94814 1.70108 1.47659 1.36398 1.03284 0.85364 0.77992 0.78800 0.78680 1.18567 1.20321 1.20258 1.21485 0.99561 0.93334 0.99127 1.22093 0.87629 0.96716 1.00227 0.85081 0.92392 0.92208 0.85348 0.84754 0.91674 0.92221 0.93501 0.88545 0.90101 0.95152 0.92834 0.91157 0.91998 0.83835 0.96170 0.92343 0.92844 0.93179 0.99192 0.99057 0.92777 0.90955 0.91377 0.94807 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -4.95 10.56 -51.41 -0.54 -5.49 16 3 C 0.46 7.12 7.96 71.24 0.57 7.69 16 4 O -0.55 -12.84 15.73 21.97 0.35 -12.49 16 5 C -0.10 -0.85 5.81 29.85 0.17 -0.68 16 6 C -0.11 -1.40 3.75 30.59 0.11 -1.28 16 7 C 0.06 0.66 5.27 86.30 0.46 1.12 16 8 N -0.55 -9.12 4.81 -896.36 -4.31 -13.42 16 9 C 0.06 1.15 4.85 86.33 0.42 1.57 16 10 C -0.14 -3.26 5.35 30.65 0.16 -3.09 16 11 C 0.09 2.11 2.53 44.99 0.11 2.22 16 12 N -0.68 -20.09 6.26 -491.14 -3.07 -23.16 16 13 C 0.07 2.67 5.49 86.31 0.47 3.14 16 14 C -0.09 -3.98 5.41 30.60 0.17 -3.81 16 15 C 0.02 1.33 4.97 29.85 0.15 1.48 16 16 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 19 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 20 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C -0.10 -1.94 5.70 30.64 0.17 -1.76 16 25 C 0.06 0.98 5.43 86.33 0.47 1.45 16 26 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 29 H 0.13 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.06 0.97 6.17 -2.39 -0.01 0.96 16 33 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 1.61 5.81 -2.39 -0.01 1.59 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 1.36 7.55 -2.39 -0.02 1.34 16 38 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 39 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16 40 H 0.34 9.58 8.45 -89.70 -0.76 8.82 16 41 H 0.02 0.73 7.51 -2.39 -0.02 0.72 16 42 H 0.06 2.17 8.06 -2.39 -0.02 2.15 16 43 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 46 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -72.15 402.92 0.18 -71.96 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.12 Total: 15.07 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 5.33 Total: -21.91 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -7.09 Total: -94.43 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.20 Total: -17.98 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.15 0.18 -71.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342481978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.640 kcal (2) G-P(sol) polarization free energy of solvation -72.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds