Wall clock time and date at job start Tue Mar 31 2020 11:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00222 * 2 1 4 4 H 1.48494 * 109.47305 * 269.99941 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00387 * 3 2 1 6 6 H 1.48497 * 109.47164 * 149.99947 * 3 2 1 7 7 C 1.37887 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99584 * 171.41221 * 7 2 1 9 9 C 1.50696 * 119.99798 * 351.40148 * 7 2 1 10 10 C 1.53004 * 115.55191 * 325.10188 * 9 7 2 11 11 N 1.46501 * 109.47245 * 306.66955 * 10 9 7 12 12 C 1.34775 * 119.99835 * 183.91312 * 11 10 9 13 13 O 1.21626 * 120.00214 * 5.62805 * 12 11 10 14 14 C 1.47254 * 119.99888 * 185.62192 * 12 11 10 15 15 C 1.47064 * 127.19980 * 354.39638 * 14 12 11 16 16 C 1.34139 * 105.96832 * 180.09028 * 15 14 12 17 17 O 1.34270 * 109.16387 * 359.66405 * 16 15 14 18 18 C 1.33678 * 110.91323 * 0.22093 * 17 16 15 19 19 Br 1.89101 * 125.82316 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.49773 * 110.77457 * 9 7 2 21 21 C 1.53001 * 117.50034 * 179.43403 * 9 7 2 22 22 H 0.96996 * 120.00082 * 5.03164 * 1 2 3 23 23 H 1.09006 * 109.47020 * 186.66732 * 10 9 7 24 24 H 1.09000 * 109.46882 * 66.67202 * 10 9 7 25 25 H 0.97000 * 119.99415 * 3.91027 * 11 10 9 26 26 H 1.07996 * 127.01974 * 0.02562 * 15 14 12 27 27 H 1.07996 * 125.41583 * 179.97438 * 16 15 14 28 28 H 1.09003 * 117.49973 * 215.00143 * 20 9 7 29 29 H 1.08994 * 117.49826 * 0.02562 * 20 9 7 30 30 H 1.09010 * 117.49492 * 359.97438 * 21 9 7 31 31 H 1.08992 * 117.50346 * 144.97395 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0754 -1.1993 -0.1402 9 6 1.2637 -2.4919 0.1940 10 6 0.0666 -2.4323 1.1450 11 7 0.4889 -1.8617 2.4265 12 6 -0.3844 -1.7845 3.4502 13 8 -1.4901 -2.2800 3.3450 14 6 0.0003 -1.1002 4.6961 15 6 1.3208 -0.5500 5.0371 16 6 1.1967 -0.0275 6.2663 17 8 -0.0642 -0.2015 6.6939 18 6 -0.7962 -0.8387 5.7746 19 35 -2.6226 -1.3002 5.9394 20 6 1.1666 -3.4366 -1.0056 21 6 2.0833 -3.7837 0.1702 22 1 -0.4850 0.8368 -0.0737 23 1 -0.3206 -3.4386 1.3052 24 1 -0.7133 -1.8081 0.7087 25 1 1.3970 -1.5396 2.5382 26 1 2.2095 -0.5646 4.4236 27 1 1.9842 0.4603 6.8214 28 1 0.2499 -4.0157 -1.1173 29 1 1.6390 -3.1196 -1.9353 30 1 3.1583 -3.6948 0.0134 31 1 1.7699 -4.5909 0.8322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404775858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:04 Heat of formation + Delta-G solvation = 15.059963 kcal Electronic energy + Delta-G solvation = -18216.019317 eV Core-core repulsion = 15125.848879 eV Total energy + Delta-G solvation = -3090.170439 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.46792 -38.63135 -36.64536 -33.25046 -32.68123 -32.19747 -31.83970 -28.77837 -26.29043 -25.42649 -22.79859 -21.28918 -21.06008 -19.49180 -19.22079 -17.98284 -16.40695 -16.29930 -15.49633 -14.98535 -14.83482 -14.33876 -14.07194 -13.55021 -13.05451 -12.96365 -12.56401 -12.37747 -11.80378 -11.51814 -11.13830 -11.09743 -10.81366 -10.53826 -10.46146 -10.29250 -9.72845 -9.64875 -9.20365 -9.04459 -8.85909 -8.59398 -8.27502 -7.83905 -6.09090 -4.21592 0.92724 1.31504 2.14372 3.17919 3.27652 3.28128 3.36324 3.88681 4.11056 4.26214 4.78745 4.88817 5.11690 5.33666 5.46780 5.69402 5.85224 6.00599 6.25194 6.29959 6.53244 6.61078 6.70535 6.81899 6.89567 7.06748 7.25932 7.52792 7.57010 7.89643 8.28826 8.50974 8.78873 9.08711 9.39830 10.86305 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.005195 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.972058 B = 5388.529247 C = 6028.214694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.164 3.836 11 N -0.674 5.674 12 C 0.567 3.433 13 O -0.544 6.544 14 C -0.167 4.167 15 C -0.184 4.184 16 C -0.025 4.025 17 O -0.166 6.166 18 C 0.027 3.973 19 Br 0.076 6.924 20 C -0.196 4.196 21 C -0.212 4.212 22 H 0.264 0.736 23 H 0.029 0.971 24 H 0.111 0.889 25 H 0.400 0.600 26 H 0.167 0.833 27 H 0.214 0.786 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -0.053 13.274 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.129 4.129 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.036 3.964 10 C 0.041 3.959 11 N -0.322 5.322 12 C 0.351 3.649 13 O -0.424 6.424 14 C -0.174 4.174 15 C -0.204 4.204 16 C -0.092 4.092 17 O -0.063 6.063 18 C -0.104 4.104 19 Br 0.161 6.839 20 C -0.234 4.234 21 C -0.249 4.249 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.128 0.872 25 H 0.235 0.765 26 H 0.184 0.816 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.112 -0.331 13.556 13.724 hybrid contribution 1.558 1.196 -0.285 1.985 sum -0.554 0.866 13.271 13.311 Atomic orbital electron populations 1.69833 1.05854 1.26991 1.47478 1.24982 0.94769 0.99013 0.94151 0.86633 0.79890 0.83428 0.78440 1.20555 1.21018 1.19665 1.20481 0.93498 0.88727 1.51051 0.92020 1.19198 0.93990 0.89135 0.94077 1.21059 0.98326 0.95607 0.80919 1.45582 1.14205 1.60483 1.11885 1.17018 0.85175 0.80443 0.82226 1.90779 1.21204 1.48140 1.82281 1.21647 0.93593 1.05618 0.96581 1.23054 0.97868 1.02452 0.97007 1.24004 0.84277 1.04295 0.96673 1.83810 1.20949 1.60260 1.41320 1.24029 0.92815 1.02959 0.90570 1.96889 0.98541 1.90476 1.98038 1.22919 0.99797 1.06661 0.94044 1.22966 0.97008 1.01835 1.03125 0.92556 0.95297 0.87155 0.76525 0.81567 0.76993 0.91460 0.90203 0.90635 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.83 10.67 55.43 0.59 -22.24 16 2 C 0.08 1.90 5.15 -17.82 -0.09 1.81 16 3 Si 0.89 19.59 29.55 -169.99 -5.02 14.56 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.50 -12.42 8.27 -34.44 -0.28 -12.71 16 8 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 9 C 0.04 0.85 2.01 -155.66 -0.31 0.54 16 10 C 0.16 3.83 4.72 -4.04 -0.02 3.81 16 11 N -0.67 -14.50 5.26 -61.43 -0.32 -14.82 16 12 C 0.57 12.07 7.80 -12.60 -0.10 11.97 16 13 O -0.54 -12.78 15.36 5.25 0.08 -12.70 16 14 C -0.17 -3.01 6.31 -103.25 -0.65 -3.66 16 15 C -0.18 -2.62 10.60 -37.45 -0.40 -3.02 16 16 C -0.02 -0.29 12.03 29.29 0.35 0.06 16 17 O -0.17 -2.38 10.53 7.44 0.08 -2.30 16 18 C 0.03 0.45 7.86 30.14 0.24 0.68 16 19 Br 0.08 1.19 32.44 -68.01 -2.21 -1.02 16 20 C -0.20 -4.25 9.96 -26.69 -0.27 -4.52 16 21 C -0.21 -4.37 9.92 -26.69 -0.26 -4.63 16 22 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 23 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 24 H 0.11 2.94 6.03 -51.93 -0.31 2.62 16 25 H 0.40 8.14 7.10 -40.82 -0.29 7.85 16 26 H 0.17 2.08 7.75 -52.49 -0.41 1.67 16 27 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -28.44 295.46 -7.23 -35.67 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -3.09 Total: 8.05 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.80 Total: -9.66 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.27 Total: -37.06 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.16 Total: -15.00 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 35 Polarization: 1.19 SS G_CDS: -2.21 Total: -1.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.44 -7.23 -35.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404775858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.734 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds