Wall clock time and date at job start Tue Mar 31 2020 11:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00222 * 2 1 4 4 H 1.48494 * 109.47305 * 269.99941 * 3 2 1 5 5 H 1.48500 * 109.47004 * 30.00387 * 3 2 1 6 6 H 1.48497 * 109.47164 * 149.99947 * 3 2 1 7 7 C 1.37887 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99584 * 171.41221 * 7 2 1 9 9 C 1.50696 * 119.99798 * 351.40148 * 7 2 1 10 10 C 1.53004 * 115.55191 * 325.10188 * 9 7 2 11 11 N 1.46501 * 109.47245 * 306.66955 * 10 9 7 12 12 C 1.34775 * 119.99835 * 183.91312 * 11 10 9 13 13 O 1.21626 * 120.00214 * 5.62805 * 12 11 10 14 14 C 1.47254 * 119.99888 * 185.62192 * 12 11 10 15 15 C 1.47064 * 127.19980 * 354.39638 * 14 12 11 16 16 C 1.34139 * 105.96832 * 180.09028 * 15 14 12 17 17 O 1.34270 * 109.16387 * 359.66405 * 16 15 14 18 18 C 1.33678 * 110.91323 * 0.22093 * 17 16 15 19 19 Br 1.89101 * 125.82316 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.49773 * 110.77457 * 9 7 2 21 21 C 1.53001 * 117.50034 * 179.43403 * 9 7 2 22 22 H 0.96996 * 120.00082 * 5.03164 * 1 2 3 23 23 H 1.09006 * 109.47020 * 186.66732 * 10 9 7 24 24 H 1.09000 * 109.46882 * 66.67202 * 10 9 7 25 25 H 0.97000 * 119.99415 * 3.91027 * 11 10 9 26 26 H 1.07996 * 127.01974 * 0.02562 * 15 14 12 27 27 H 1.07996 * 125.41583 * 179.97438 * 16 15 14 28 28 H 1.09003 * 117.49973 * 215.00143 * 20 9 7 29 29 H 1.08994 * 117.49826 * 0.02562 * 20 9 7 30 30 H 1.09010 * 117.49492 * 359.97438 * 21 9 7 31 31 H 1.08992 * 117.50346 * 144.97395 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0754 -1.1993 -0.1402 9 6 1.2637 -2.4919 0.1940 10 6 0.0666 -2.4323 1.1450 11 7 0.4889 -1.8617 2.4265 12 6 -0.3844 -1.7845 3.4502 13 8 -1.4901 -2.2800 3.3450 14 6 0.0003 -1.1002 4.6961 15 6 1.3208 -0.5500 5.0371 16 6 1.1967 -0.0275 6.2663 17 8 -0.0642 -0.2015 6.6939 18 6 -0.7962 -0.8387 5.7746 19 35 -2.6226 -1.3002 5.9394 20 6 1.1666 -3.4366 -1.0056 21 6 2.0833 -3.7837 0.1702 22 1 -0.4850 0.8368 -0.0737 23 1 -0.3206 -3.4386 1.3052 24 1 -0.7133 -1.8081 0.7087 25 1 1.3970 -1.5396 2.5382 26 1 2.2095 -0.5646 4.4236 27 1 1.9842 0.4603 6.8214 28 1 0.2499 -4.0157 -1.1173 29 1 1.6390 -3.1196 -1.9353 30 1 3.1583 -3.6948 0.0134 31 1 1.7699 -4.5909 0.8322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404775858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:04 Heat of formation + Delta-G solvation = -2.044094 kcal Electronic energy + Delta-G solvation = -18216.761005 eV Core-core repulsion = 15125.848879 eV Total energy + Delta-G solvation = -3090.912126 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.61411 -40.31448 -38.40707 -34.88730 -34.16273 -33.91673 -33.05091 -29.96844 -28.04097 -27.29823 -24.19821 -22.94492 -22.27915 -21.18184 -20.77259 -19.37161 -18.13260 -17.46633 -16.98468 -16.69886 -16.54899 -15.85662 -15.62033 -15.14589 -14.70317 -14.26805 -13.90064 -13.77420 -13.57972 -13.36669 -12.89009 -12.62383 -12.36505 -12.27184 -12.03259 -11.74835 -11.38903 -11.05386 -10.93816 -10.75805 -10.62403 -10.11141 -9.81036 -9.56112 -7.99171 -6.17393 -0.27483 0.02200 1.06315 1.43382 1.48243 1.56067 2.19628 2.36159 2.42901 2.58890 3.07070 3.64591 3.67757 3.82367 4.19222 4.27276 4.49413 4.55732 4.73691 4.77764 4.81756 4.97899 5.13719 5.22144 5.30869 5.53708 5.61093 5.70485 5.82664 5.94830 6.39416 6.77065 6.93837 7.43091 7.46507 8.93977 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.005195 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.972058 B = 5388.529247 C = 6028.214694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 0.945 3.055 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.256 1.256 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.009 3.991 10 C 0.177 3.823 11 N -0.672 5.672 12 C 0.562 3.438 13 O -0.575 6.575 14 C -0.198 4.198 15 C -0.203 4.203 16 C 0.008 3.992 17 O -0.162 6.162 18 C 0.017 3.983 19 Br 0.076 6.924 20 C -0.199 4.199 21 C -0.186 4.186 22 H 0.258 0.742 23 H 0.024 0.976 24 H 0.076 0.924 25 H 0.405 0.595 26 H 0.182 0.818 27 H 0.270 0.730 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 0.592 14.668 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.180 1.180 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.008 3.992 10 C 0.053 3.947 11 N -0.320 5.320 12 C 0.348 3.652 13 O -0.458 6.458 14 C -0.205 4.205 15 C -0.222 4.222 16 C -0.059 4.059 17 O -0.059 6.059 18 C -0.114 4.114 19 Br 0.160 6.840 20 C -0.237 4.237 21 C -0.223 4.223 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.241 0.759 26 H 0.199 0.801 27 H 0.286 0.714 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.021 0.309 14.960 14.964 hybrid contribution 0.939 0.974 -0.700 1.523 sum 0.917 1.283 14.260 14.347 Atomic orbital electron populations 1.70010 1.07133 1.27051 1.48816 1.25575 0.95222 1.01659 0.93988 0.85752 0.79281 0.79854 0.78040 1.21005 1.21706 1.17994 1.20671 0.93477 0.89529 1.50588 0.92060 1.19260 0.94821 0.89891 0.95191 1.20704 0.97689 0.94521 0.81798 1.45478 1.14532 1.60589 1.11363 1.17506 0.84595 0.79925 0.83136 1.90743 1.22418 1.49498 1.83131 1.21532 0.96166 1.07184 0.95644 1.23268 0.96864 1.03559 0.98545 1.25055 0.83720 1.01356 0.95734 1.83856 1.21915 1.59491 1.40605 1.24050 0.93146 1.03362 0.90805 1.96872 0.98578 1.90565 1.98003 1.22938 1.00605 1.06275 0.93916 1.22957 0.97214 1.00227 1.01898 0.93236 0.95788 0.90659 0.75909 0.80103 0.71441 0.90802 0.90483 0.89563 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.92 10.67 21.45 0.23 -47.69 16 2 C 0.04 1.87 5.15 84.66 0.44 2.31 16 3 Si 0.94 39.70 29.55 68.60 2.03 41.73 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.51 -24.76 8.27 25.60 0.21 -24.55 16 8 H 0.06 2.95 7.83 -2.91 -0.02 2.93 16 9 C 0.01 0.42 2.01 -52.93 -0.11 0.31 16 10 C 0.18 8.42 4.72 86.38 0.41 8.83 16 11 N -0.67 -29.12 5.26 -466.52 -2.46 -31.58 16 12 C 0.56 24.24 7.80 86.61 0.68 24.92 16 13 O -0.58 -27.82 15.36 -4.11 -0.06 -27.88 16 14 C -0.20 -6.99 6.31 -18.97 -0.12 -7.11 16 15 C -0.20 -5.27 10.60 23.65 0.25 -5.02 16 16 C 0.01 0.16 12.03 66.88 0.80 0.97 16 17 O -0.16 -4.20 10.53 3.70 0.04 -4.16 16 18 C 0.02 0.56 7.86 67.44 0.53 1.09 16 19 Br 0.08 2.35 32.44 -20.37 -0.66 1.69 16 20 C -0.20 -8.50 9.96 30.62 0.30 -8.19 16 21 C -0.19 -7.33 9.92 30.62 0.30 -7.02 16 22 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 23 H 0.02 1.14 8.06 -2.38 -0.02 1.12 16 24 H 0.08 4.16 6.03 -2.39 -0.01 4.15 16 25 H 0.41 16.37 7.10 -92.71 -0.66 15.71 16 26 H 0.18 4.03 7.75 -2.91 -0.02 4.01 16 27 H 0.27 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -61.96 295.46 3.32 -58.64 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.51 Total: 22.72 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.70 Total: -13.46 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -2.23 Total: -79.26 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.02 Total: -32.04 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 35 Polarization: 2.35 SS G_CDS: -0.66 Total: 1.69 kcal Total: -61.96 3.32 -58.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404775858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.591 kcal (2) G-P(sol) polarization free energy of solvation -61.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds