Wall clock time and date at job start Tue Mar 31 2020 10:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46630 * 2 1 4 4 C 1.42904 * 113.99360 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46425 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.70257 * 49.20962 * 5 4 3 7 7 C 1.53627 * 109.66029 * 169.80078 * 5 4 3 8 8 C 1.53035 * 109.24317 * 174.54778 * 7 5 4 9 9 C 1.53041 * 109.53789 * 298.51402 * 8 7 5 10 10 C 1.53189 * 109.31537 * 61.36157 * 9 8 7 11 11 N 1.46922 * 109.58748 * 288.85112 * 5 4 3 12 12 C 1.34778 * 120.62993 * 6.63070 * 11 5 4 13 13 O 1.21590 * 120.00039 * 4.11523 * 12 11 5 14 14 N 1.34784 * 120.00084 * 184.12265 * 12 11 5 15 15 C 1.46499 * 120.00146 * 185.11814 * 14 12 11 16 16 C 1.52991 * 109.46828 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47873 * 60.00055 * 16 15 14 18 18 C 1.53005 * 109.46983 * 299.99497 * 16 15 14 19 19 C 1.50711 * 109.46840 * 180.02562 * 16 15 14 20 20 H 1.07997 * 119.99795 * 5.65055 * 19 16 15 21 21 C 1.37872 * 119.99757 * 185.65518 * 19 16 15 22 22 N 1.31512 * 119.99988 * 150.71572 * 21 19 16 23 23 Si 1.86800 * 120.00242 * 330.70791 * 21 19 16 24 24 H 1.48500 * 109.47384 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47243 * 60.00383 * 23 21 19 26 26 H 1.48500 * 109.47253 * 300.00608 * 23 21 19 27 27 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47267 * 299.99856 * 1 2 3 29 29 H 1.08995 * 109.47547 * 59.99867 * 1 2 3 30 30 H 1.08997 * 109.46746 * 240.00700 * 2 1 3 31 31 H 1.08993 * 109.47071 * 119.99953 * 2 1 3 32 32 H 1.08997 * 109.47322 * 60.00598 * 4 3 2 33 33 H 1.08996 * 109.47208 * 299.99712 * 4 3 2 34 34 H 1.09000 * 109.63377 * 54.55534 * 7 5 4 35 35 H 1.09002 * 109.45744 * 294.43245 * 7 5 4 36 36 H 1.08997 * 109.46425 * 178.49128 * 8 7 5 37 37 H 1.09009 * 109.45916 * 58.52924 * 8 7 5 38 38 H 1.09002 * 109.49734 * 301.40897 * 9 8 7 39 39 H 1.09002 * 109.52543 * 181.33074 * 9 8 7 40 40 H 1.09004 * 109.58564 * 185.57820 * 10 9 8 41 41 H 1.09001 * 109.58624 * 65.15155 * 10 9 8 42 42 H 0.96998 * 119.99626 * 5.11783 * 14 12 11 43 43 H 1.08995 * 109.47102 * 59.99066 * 15 14 12 44 44 H 1.08997 * 109.46744 * 299.99646 * 15 14 12 45 45 H 1.08999 * 109.47232 * 173.95406 * 17 16 15 46 46 H 1.09006 * 109.46345 * 293.95445 * 17 16 15 47 47 H 1.08999 * 109.47179 * 53.94719 * 17 16 15 48 48 H 1.08994 * 109.47139 * 302.70388 * 18 16 15 49 49 H 1.08997 * 109.46852 * 62.70838 * 18 16 15 50 50 H 1.09004 * 109.46708 * 182.70891 * 18 16 15 51 51 H 0.96994 * 120.00132 * 354.97251 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 1 3.2726 3.4659 0.7776 7 6 5.3343 3.0708 0.2557 8 6 5.7421 4.5395 0.1197 9 6 5.4508 5.0219 -1.3032 10 6 3.9480 4.9099 -1.5785 11 7 3.5195 3.5305 -1.3093 12 6 2.8537 2.8235 -2.2439 13 8 2.4345 1.7127 -1.9818 14 7 2.6525 3.3479 -3.4692 15 6 1.8337 2.6289 -4.4483 16 6 1.7661 3.4351 -5.7468 17 6 3.1785 3.6242 -6.3039 18 6 1.1412 4.8031 -5.4658 19 6 0.9232 2.6956 -6.7538 20 1 0.4057 1.7926 -6.4657 21 6 0.8129 3.1721 -8.0429 22 7 0.6083 2.3364 -9.0376 23 14 0.9539 5.0046 -8.3767 24 1 0.8002 5.2559 -9.8322 25 1 2.2842 5.4886 -7.9281 26 1 -0.1112 5.7262 -7.6351 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9769 -0.8908 33 1 3.8340 0.9765 0.8891 34 1 5.8828 2.4721 -0.4715 35 1 5.5642 2.7211 1.2622 36 1 6.8074 4.6413 0.3266 37 1 5.1752 5.1411 0.8303 38 1 5.9982 4.4049 -2.0158 39 1 5.7631 6.0611 -1.4067 40 1 3.7480 5.1579 -2.6209 41 1 3.4051 5.5948 -0.9271 42 1 3.0499 4.2014 -3.7026 43 1 0.8277 2.4936 -4.0512 44 1 2.2791 1.6545 -4.6488 45 1 3.1224 4.1039 -7.2811 46 1 3.7562 4.2507 -5.6242 47 1 3.6630 2.6529 -6.4031 48 1 0.1539 4.6678 -5.0244 49 1 1.7757 5.3571 -4.7740 50 1 1.0489 5.3589 -6.3989 51 1 0.6077 1.3801 -8.8753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459245695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:18 Heat of formation + Delta-G solvation = -54.618421 kcal Electronic energy + Delta-G solvation = -28578.364579 eV Core-core repulsion = 24899.942220 eV Total energy + Delta-G solvation = -3678.422359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 11.29 seconds Orbital eigenvalues (eV) -40.48788 -37.84796 -37.21116 -36.33261 -33.62214 -32.66291 -32.20340 -31.07741 -30.48243 -26.78059 -26.31154 -25.60153 -24.51131 -24.11062 -22.44748 -22.04391 -20.99545 -19.47868 -19.04435 -17.66517 -16.66457 -16.36351 -16.14008 -15.67044 -15.23321 -14.82244 -14.69872 -14.27060 -14.23316 -14.05297 -13.67961 -13.35919 -13.05328 -12.86990 -12.74476 -12.57522 -12.46767 -12.27758 -11.99693 -11.95877 -11.80317 -11.41596 -11.29813 -11.19138 -10.98326 -10.87473 -10.87343 -10.58123 -10.52807 -10.14483 -10.03405 -9.89464 -9.21480 -9.01964 -8.98817 -8.86391 -8.34334 -8.13523 -8.08463 -6.51361 -4.05592 2.94215 3.34490 3.41121 3.63296 3.68225 3.95735 4.27890 4.47971 4.62980 4.63885 4.73501 4.99233 5.10536 5.14335 5.17525 5.26729 5.31953 5.41189 5.49515 5.56739 5.57679 5.64895 5.69174 5.70126 5.80147 5.81618 5.88175 5.98128 6.00768 6.13490 6.15079 6.17275 6.25028 6.36756 6.42053 6.50881 6.61141 6.67871 6.75141 6.78635 6.91713 7.13620 7.29712 7.35500 7.52586 7.68918 8.17085 8.37361 8.45984 8.89311 9.14970 9.57322 10.85409 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004295 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.387614 B = 6517.717776 C = 7978.424686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.358 6.358 4 C 0.082 3.918 5 C 0.169 3.831 6 H 0.073 0.927 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.137 4.137 10 C 0.113 3.887 11 N -0.631 5.631 12 C 0.696 3.304 13 O -0.559 6.559 14 N -0.743 5.743 15 C 0.165 3.835 16 C 0.034 3.966 17 C -0.138 4.138 18 C -0.145 4.145 19 C -0.606 4.606 20 H 0.060 0.940 21 C 0.044 3.956 22 N -0.888 5.888 23 Si 1.049 2.951 24 H -0.300 1.300 25 H -0.277 1.277 26 H -0.288 1.288 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.388 0.612 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.019 0.981 47 H 0.044 0.956 48 H 0.050 0.950 49 H 0.024 0.976 50 H 0.041 0.959 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 4.168 19.755 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.277 6.277 4 C 0.005 3.995 5 C 0.064 3.936 6 H 0.090 0.910 7 C -0.168 4.168 8 C -0.153 4.153 9 C -0.175 4.175 10 C -0.011 4.011 11 N -0.371 5.371 12 C 0.398 3.602 13 O -0.436 6.436 14 N -0.400 5.400 15 C 0.042 3.958 16 C 0.033 3.967 17 C -0.196 4.196 18 C -0.202 4.202 19 C -0.643 4.643 20 H 0.078 0.922 21 C -0.163 4.163 22 N -0.520 5.520 23 Si 0.883 3.117 24 H -0.228 1.228 25 H -0.205 1.205 26 H -0.216 1.216 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.224 0.776 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.043 0.957 50 H 0.059 0.941 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.396 4.579 18.704 21.426 hybrid contribution 0.443 -0.807 1.085 1.423 sum 9.839 3.772 19.788 22.419 Atomic orbital electron populations 1.21662 0.94620 1.01330 1.02669 1.22112 0.94840 0.84735 0.98555 1.87926 1.19693 1.25268 1.94781 1.22285 0.83705 0.94448 0.99055 1.21036 0.94284 0.93752 0.84486 0.90956 1.21992 0.95182 0.97416 1.02178 1.21463 1.01210 0.95751 0.96877 1.21948 0.96289 1.01778 0.97511 1.21565 0.94621 0.83487 1.01385 1.47226 1.61362 1.13999 1.14506 1.15996 0.79071 0.84656 0.80517 1.90940 1.55037 1.18984 1.78613 1.45751 1.56105 1.25647 1.12528 1.21284 0.92858 0.94774 0.86881 1.18657 0.93536 0.92274 0.92270 1.22196 0.97535 0.99775 1.00054 1.22314 1.00281 0.98695 0.98917 1.21620 1.34301 1.12604 0.95822 0.92203 1.25649 0.93250 1.05518 0.91930 1.70837 1.43710 1.04764 1.32688 0.84225 0.76799 0.76638 0.74072 1.22814 1.20502 1.21581 0.91963 0.92813 0.91659 0.93483 0.95484 0.91581 0.95223 0.91267 0.90816 0.91631 0.91728 0.91354 0.90789 0.90356 0.91651 0.77560 0.92884 0.92756 0.92695 0.96251 0.93694 0.93089 0.95713 0.94114 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.58 16 2 C 0.07 1.09 6.14 37.16 0.23 1.32 16 3 O -0.36 -5.94 7.83 -60.68 -0.48 -6.41 16 4 C 0.08 1.14 4.52 37.16 0.17 1.31 16 5 C 0.17 2.03 3.18 -67.37 -0.21 1.82 16 6 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.13 -1.16 5.38 -26.39 -0.14 -1.30 16 8 C -0.12 -0.88 5.88 -26.69 -0.16 -1.04 16 9 C -0.14 -1.15 6.08 -26.61 -0.16 -1.31 16 10 C 0.11 1.20 6.43 -3.71 -0.02 1.17 16 11 N -0.63 -8.62 2.97 -170.65 -0.51 -9.13 16 12 C 0.70 12.22 8.05 -86.91 -0.70 11.52 16 13 O -0.56 -11.20 9.77 -20.16 -0.20 -11.40 16 14 N -0.74 -13.13 4.91 -65.23 -0.32 -13.46 16 15 C 0.17 3.50 4.51 -4.05 -0.02 3.49 16 16 C 0.03 0.77 0.50 -155.66 -0.08 0.69 16 17 C -0.14 -2.94 7.89 37.16 0.29 -2.64 16 18 C -0.15 -3.02 7.72 37.16 0.29 -2.74 16 19 C -0.61 -16.52 8.42 -34.44 -0.29 -16.81 16 20 H 0.06 1.78 7.99 -52.49 -0.42 1.36 16 21 C 0.04 1.23 5.06 -17.82 -0.09 1.14 16 22 N -0.89 -26.66 13.70 55.43 0.76 -25.90 16 23 Si 1.05 25.05 23.48 -169.99 -3.99 21.06 16 24 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.04 5.74 56.52 0.32 -5.72 16 26 H -0.29 -6.56 6.73 56.52 0.38 -6.18 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.07 6.49 -51.93 -0.34 0.73 16 33 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.85 5.57 -51.93 -0.29 0.56 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.39 6.11 3.71 -40.82 -0.15 5.96 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.23 4.42 -51.93 -0.23 1.00 16 46 H 0.02 0.34 7.04 -51.93 -0.37 -0.03 16 47 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 50 H 0.04 0.88 2.34 -51.93 -0.12 0.76 16 51 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -31.00 371.77 -8.76 -39.76 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -9.12 Total: 4.83 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.52 Total: -4.96 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.07 Total: -48.49 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.67 Total: -17.81 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -3.99 Total: 21.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.00 -8.76 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459245695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.856 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.29 seconds