Wall clock time and date at job start Tue Mar 31 2020 10:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46630 * 2 1 4 4 C 1.42904 * 113.99360 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46425 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.70257 * 49.20962 * 5 4 3 7 7 C 1.53627 * 109.66029 * 169.80078 * 5 4 3 8 8 C 1.53035 * 109.24317 * 174.54778 * 7 5 4 9 9 C 1.53041 * 109.53789 * 298.51402 * 8 7 5 10 10 C 1.53189 * 109.31537 * 61.36157 * 9 8 7 11 11 N 1.46922 * 109.58748 * 288.85112 * 5 4 3 12 12 C 1.34778 * 120.62993 * 6.63070 * 11 5 4 13 13 O 1.21590 * 120.00039 * 4.11523 * 12 11 5 14 14 N 1.34784 * 120.00084 * 184.12265 * 12 11 5 15 15 C 1.46499 * 120.00146 * 185.11814 * 14 12 11 16 16 C 1.52991 * 109.46828 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47873 * 60.00055 * 16 15 14 18 18 C 1.53005 * 109.46983 * 299.99497 * 16 15 14 19 19 C 1.50711 * 109.46840 * 180.02562 * 16 15 14 20 20 H 1.07997 * 119.99795 * 5.65055 * 19 16 15 21 21 C 1.37872 * 119.99757 * 185.65518 * 19 16 15 22 22 N 1.31512 * 119.99988 * 150.71572 * 21 19 16 23 23 Si 1.86800 * 120.00242 * 330.70791 * 21 19 16 24 24 H 1.48500 * 109.47384 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47243 * 60.00383 * 23 21 19 26 26 H 1.48500 * 109.47253 * 300.00608 * 23 21 19 27 27 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47267 * 299.99856 * 1 2 3 29 29 H 1.08995 * 109.47547 * 59.99867 * 1 2 3 30 30 H 1.08997 * 109.46746 * 240.00700 * 2 1 3 31 31 H 1.08993 * 109.47071 * 119.99953 * 2 1 3 32 32 H 1.08997 * 109.47322 * 60.00598 * 4 3 2 33 33 H 1.08996 * 109.47208 * 299.99712 * 4 3 2 34 34 H 1.09000 * 109.63377 * 54.55534 * 7 5 4 35 35 H 1.09002 * 109.45744 * 294.43245 * 7 5 4 36 36 H 1.08997 * 109.46425 * 178.49128 * 8 7 5 37 37 H 1.09009 * 109.45916 * 58.52924 * 8 7 5 38 38 H 1.09002 * 109.49734 * 301.40897 * 9 8 7 39 39 H 1.09002 * 109.52543 * 181.33074 * 9 8 7 40 40 H 1.09004 * 109.58564 * 185.57820 * 10 9 8 41 41 H 1.09001 * 109.58624 * 65.15155 * 10 9 8 42 42 H 0.96998 * 119.99626 * 5.11783 * 14 12 11 43 43 H 1.08995 * 109.47102 * 59.99066 * 15 14 12 44 44 H 1.08997 * 109.46744 * 299.99646 * 15 14 12 45 45 H 1.08999 * 109.47232 * 173.95406 * 17 16 15 46 46 H 1.09006 * 109.46345 * 293.95445 * 17 16 15 47 47 H 1.08999 * 109.47179 * 53.94719 * 17 16 15 48 48 H 1.08994 * 109.47139 * 302.70388 * 18 16 15 49 49 H 1.08997 * 109.46852 * 62.70838 * 18 16 15 50 50 H 1.09004 * 109.46708 * 182.70891 * 18 16 15 51 51 H 0.96994 * 120.00132 * 354.97251 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 1 3.2726 3.4659 0.7776 7 6 5.3343 3.0708 0.2557 8 6 5.7421 4.5395 0.1197 9 6 5.4508 5.0219 -1.3032 10 6 3.9480 4.9099 -1.5785 11 7 3.5195 3.5305 -1.3093 12 6 2.8537 2.8235 -2.2439 13 8 2.4345 1.7127 -1.9818 14 7 2.6525 3.3479 -3.4692 15 6 1.8337 2.6289 -4.4483 16 6 1.7661 3.4351 -5.7468 17 6 3.1785 3.6242 -6.3039 18 6 1.1412 4.8031 -5.4658 19 6 0.9232 2.6956 -6.7538 20 1 0.4057 1.7926 -6.4657 21 6 0.8129 3.1721 -8.0429 22 7 0.6083 2.3364 -9.0376 23 14 0.9539 5.0046 -8.3767 24 1 0.8002 5.2559 -9.8322 25 1 2.2842 5.4886 -7.9281 26 1 -0.1112 5.7262 -7.6351 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9769 -0.8908 33 1 3.8340 0.9765 0.8891 34 1 5.8828 2.4721 -0.4715 35 1 5.5642 2.7211 1.2622 36 1 6.8074 4.6413 0.3266 37 1 5.1752 5.1411 0.8303 38 1 5.9982 4.4049 -2.0158 39 1 5.7631 6.0611 -1.4067 40 1 3.7480 5.1579 -2.6209 41 1 3.4051 5.5948 -0.9271 42 1 3.0499 4.2014 -3.7026 43 1 0.8277 2.4936 -4.0512 44 1 2.2791 1.6545 -4.6488 45 1 3.1224 4.1039 -7.2811 46 1 3.7562 4.2507 -5.6242 47 1 3.6630 2.6529 -6.4031 48 1 0.1539 4.6678 -5.0244 49 1 1.7757 5.3571 -4.7740 50 1 1.0489 5.3589 -6.3989 51 1 0.6077 1.3801 -8.8753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459245695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:59 Heat of formation + Delta-G solvation = -74.011704 kcal Electronic energy + Delta-G solvation = -28579.205535 eV Core-core repulsion = 24899.942220 eV Total energy + Delta-G solvation = -3679.263314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 18.60 seconds Orbital eigenvalues (eV) -41.67556 -39.23978 -38.28705 -37.87388 -35.17172 -33.91638 -33.48386 -32.61122 -31.52741 -28.03960 -27.89920 -27.13939 -26.31082 -25.21108 -23.60882 -23.07606 -21.93915 -20.94016 -20.63915 -19.05967 -18.46789 -17.48560 -17.29240 -16.99771 -16.51447 -16.47252 -15.71344 -15.61724 -15.28773 -15.20234 -14.91165 -14.60824 -14.40162 -14.31895 -14.05295 -13.94454 -13.83869 -13.73892 -13.61480 -13.29071 -12.95359 -12.83882 -12.43119 -12.33134 -12.18434 -12.01801 -11.90004 -11.86757 -11.78192 -11.69276 -11.56139 -11.44547 -10.98884 -10.66292 -10.46426 -10.36531 -10.26077 -9.70760 -9.33228 -8.76455 -6.30380 1.44388 1.52642 1.75336 1.75925 2.35426 2.49966 2.88960 2.98254 3.11469 3.80845 3.89639 4.03872 4.11730 4.16265 4.16839 4.26561 4.30184 4.32601 4.40090 4.43205 4.48982 4.53143 4.55617 4.66091 4.78422 4.79319 4.82383 4.85257 4.91496 4.92336 4.98050 5.01150 5.05775 5.07873 5.08552 5.16927 5.19078 5.22318 5.24270 5.47962 5.48569 5.64949 5.71810 5.77838 6.03875 6.05887 6.18846 6.55922 6.58831 7.14531 7.41830 7.80075 8.59010 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.004295 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.387614 B = 6517.717776 C = 7978.424686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 O -0.381 6.381 4 C 0.080 3.920 5 C 0.165 3.835 6 H 0.080 0.920 7 C -0.122 4.122 8 C -0.112 4.112 9 C -0.132 4.132 10 C 0.105 3.895 11 N -0.626 5.626 12 C 0.687 3.313 13 O -0.591 6.591 14 N -0.734 5.734 15 C 0.187 3.813 16 C 0.032 3.968 17 C -0.134 4.134 18 C -0.143 4.143 19 C -0.613 4.613 20 H 0.012 0.988 21 C -0.004 4.004 22 N -0.924 5.924 23 Si 1.087 2.913 24 H -0.310 1.310 25 H -0.234 1.234 26 H -0.267 1.267 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.400 0.600 43 H 0.028 0.972 44 H 0.024 0.976 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.029 0.971 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.040 0.960 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.201 7.642 22.383 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.004 4.004 3 O -0.301 6.301 4 C 0.003 3.997 5 C 0.062 3.938 6 H 0.098 0.902 7 C -0.160 4.160 8 C -0.150 4.150 9 C -0.170 4.170 10 C -0.018 4.018 11 N -0.365 5.365 12 C 0.388 3.612 13 O -0.470 6.470 14 N -0.394 5.394 15 C 0.062 3.938 16 C 0.030 3.970 17 C -0.191 4.191 18 C -0.200 4.200 19 C -0.650 4.650 20 H 0.031 0.969 21 C -0.204 4.204 22 N -0.558 5.558 23 Si 0.912 3.088 24 H -0.239 1.239 25 H -0.159 1.159 26 H -0.194 1.194 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.239 0.761 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.058 0.942 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.649 8.086 21.394 25.666 hybrid contribution -0.262 -2.036 0.369 2.085 sum 11.387 6.050 21.763 25.296 Atomic orbital electron populations 1.21645 0.93990 1.02490 1.01618 1.22178 0.95445 0.84332 0.98492 1.87883 1.21249 1.26105 1.94831 1.22387 0.82499 0.96064 0.98724 1.21280 0.96613 0.92283 0.83668 0.90203 1.21974 0.92278 0.98720 1.03044 1.21479 1.02496 0.94439 0.96545 1.21932 0.94186 1.03109 0.97780 1.21865 0.96504 0.81606 1.01779 1.47303 1.60082 1.15031 1.14060 1.16231 0.79416 0.84613 0.80915 1.90944 1.56278 1.20574 1.79192 1.45398 1.55935 1.25855 1.12192 1.20707 0.91882 0.93798 0.87384 1.18597 0.93809 0.93198 0.91347 1.22090 0.96621 0.99852 1.00525 1.22215 1.00613 0.97237 0.99890 1.21820 1.34403 1.11358 0.97439 0.96929 1.27080 0.92300 1.09266 0.91787 1.70970 1.46927 1.04067 1.33788 0.83802 0.79641 0.71580 0.73746 1.23935 1.15908 1.19412 0.89781 0.91602 0.94761 0.96113 0.92812 0.94640 0.92690 0.92462 0.88651 0.89860 0.90564 0.92529 0.88350 0.90475 0.90029 0.76051 0.95402 0.95764 0.93431 0.91992 0.95215 0.93881 0.91486 0.94171 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.07 2.16 6.14 71.98 0.44 2.60 16 3 O -0.38 -12.74 7.83 -124.65 -0.98 -13.71 16 4 C 0.08 2.19 4.52 71.98 0.33 2.52 16 5 C 0.17 3.65 3.18 45.12 0.14 3.79 16 6 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.12 -1.80 5.38 30.82 0.17 -1.64 16 8 C -0.11 -1.22 5.88 30.62 0.18 -1.04 16 9 C -0.13 -1.68 6.08 30.67 0.19 -1.49 16 10 C 0.10 1.85 6.43 86.36 0.56 2.40 16 11 N -0.63 -15.99 2.97 -812.07 -2.41 -18.39 16 12 C 0.69 24.00 8.05 179.05 1.44 25.45 16 13 O -0.59 -24.63 9.77 20.33 0.20 -24.43 16 14 N -0.73 -25.40 4.91 -478.55 -2.35 -27.75 16 15 C 0.19 8.20 4.51 86.38 0.39 8.59 16 16 C 0.03 1.44 0.50 -52.93 -0.03 1.41 16 17 C -0.13 -5.42 7.89 71.98 0.57 -4.86 16 18 C -0.14 -5.56 7.72 71.98 0.56 -5.00 16 19 C -0.61 -34.75 8.42 25.60 0.22 -34.53 16 20 H 0.01 0.80 7.99 -2.91 -0.02 0.77 16 21 C 0.00 -0.23 5.06 84.65 0.43 0.20 16 22 N -0.92 -57.81 13.70 21.45 0.29 -57.52 16 23 Si 1.09 49.23 23.48 68.60 1.61 50.84 16 24 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.23 -9.01 5.74 99.48 0.57 -8.44 16 26 H -0.27 -11.22 6.73 99.48 0.67 -10.55 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.02 0.71 7.86 -2.39 -0.02 0.69 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.18 6.49 -2.39 -0.02 1.17 16 33 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.36 5.57 -2.39 -0.01 1.35 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.40 11.49 3.71 -92.71 -0.34 11.15 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 2.00 4.42 -2.39 -0.01 1.99 16 46 H 0.06 1.97 7.04 -2.38 -0.02 1.96 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 2.03 6.94 -2.39 -0.02 2.02 16 50 H 0.04 1.58 2.34 -2.38 -0.01 1.58 16 51 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 Total: -1.00 -73.10 371.77 3.02 -70.08 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.34 Total: 25.60 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.31 Total: -4.71 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.46 Total: -103.66 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.78 Total: -38.15 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.61 Total: 50.84 kcal Total: -73.10 3.02 -70.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459245695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.930 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.61 seconds