Wall clock time and date at job start Tue Mar 31 2020 10:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52994 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47140 * 54.99959 * 4 3 2 6 6 C 1.53005 * 109.47063 * 295.00550 * 4 3 2 7 7 C 1.52996 * 109.47367 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47294 * 59.99382 * 7 6 4 9 9 C 1.52997 * 109.47219 * 300.00511 * 8 7 6 10 10 C 1.52996 * 109.47404 * 59.99557 * 9 8 7 11 11 H 1.09006 * 109.47168 * 60.00167 * 10 9 8 12 12 N 1.46902 * 109.47255 * 179.97438 * 10 9 8 13 13 C 1.46901 * 111.00023 * 274.99786 * 12 10 9 14 14 C 1.53000 * 109.46818 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47398 * 305.00447 * 14 13 12 16 16 O 1.42896 * 109.47231 * 65.00513 * 14 13 12 17 17 C 1.52997 * 109.47060 * 185.00277 * 14 13 12 18 18 N 1.46894 * 109.47515 * 180.02562 * 17 14 13 19 19 C 1.46897 * 111.00086 * 293.95813 * 18 17 14 20 20 C 1.46900 * 111.00167 * 169.99883 * 18 17 14 21 21 C 1.50706 * 109.47142 * 190.00129 * 20 18 17 22 22 H 1.08001 * 120.00067 * 0.02562 * 21 20 18 23 23 C 1.37874 * 120.00385 * 180.02562 * 21 20 18 24 24 N 1.31519 * 119.99733 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46920 * 60.00234 * 25 23 21 27 27 H 1.48504 * 109.47077 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47065 * 299.99978 * 25 23 21 29 29 H 1.09001 * 109.47587 * 59.99747 * 1 2 3 30 30 H 1.09004 * 109.47222 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47336 * 299.99512 * 1 2 3 32 32 H 1.09004 * 109.46840 * 240.00403 * 2 1 3 33 33 H 1.08997 * 109.47223 * 120.00580 * 2 1 3 34 34 H 1.09004 * 109.47315 * 60.00090 * 3 2 1 35 35 H 1.08997 * 109.47525 * 300.00396 * 3 2 1 36 36 H 1.08992 * 109.47444 * 59.99748 * 6 4 3 37 37 H 1.08997 * 109.46658 * 299.99518 * 6 4 3 38 38 H 1.09005 * 109.47092 * 300.00159 * 7 6 4 39 39 H 1.08996 * 109.47520 * 179.97438 * 7 6 4 40 40 H 1.09004 * 109.47206 * 179.97438 * 8 7 6 41 41 H 1.09006 * 109.46825 * 60.00019 * 8 7 6 42 42 H 1.08996 * 109.47304 * 299.99492 * 9 8 7 43 43 H 1.09007 * 109.47184 * 179.97438 * 9 8 7 44 44 H 1.00901 * 110.99576 * 151.04578 * 12 10 9 45 45 H 1.09002 * 109.46747 * 60.00311 * 13 12 10 46 46 H 1.08991 * 109.47315 * 300.00378 * 13 12 10 47 47 H 0.96708 * 114.00101 * 59.99127 * 16 14 13 48 48 H 1.09002 * 109.47153 * 300.00319 * 17 14 13 49 49 H 1.08998 * 109.47533 * 59.99948 * 17 14 13 50 50 H 1.08994 * 109.47768 * 59.99563 * 19 18 17 51 51 H 1.09001 * 109.47114 * 180.02562 * 19 18 17 52 52 H 1.09004 * 109.46895 * 299.99681 * 19 18 17 53 53 H 1.09000 * 109.47344 * 309.99988 * 20 18 17 54 54 H 1.08997 * 109.47244 * 70.00491 * 20 18 17 55 55 H 0.97001 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0805 0.8326 1.3064 7 6 5.6104 0.8321 1.3055 8 6 6.1209 2.2689 1.1795 9 6 5.6104 2.8788 -0.1275 10 6 4.0804 2.8793 -0.1266 11 1 3.7177 3.4689 0.7155 12 7 3.5902 3.4655 -1.3813 13 6 3.5279 4.9302 -1.2890 14 6 3.0148 5.5031 -2.6117 15 1 3.6401 5.1453 -3.4297 16 8 1.6663 5.0800 -2.8228 17 6 3.0676 7.0313 -2.5603 18 7 2.5744 7.5814 -3.8299 19 6 3.4754 7.2377 -4.9379 20 6 2.3862 9.0353 -3.7359 21 6 1.6550 9.5272 -4.9585 22 1 1.3593 8.8295 -5.7280 23 6 1.3635 10.8679 -5.0946 24 7 1.7232 11.7174 -4.1573 25 14 0.4578 11.4777 -6.6102 26 1 -0.8668 10.8120 -6.6965 27 1 0.2674 12.9474 -6.5152 28 1 1.2522 11.1583 -7.8234 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7173 -0.1911 1.3959 37 1 3.7175 1.4219 2.1484 38 1 5.9731 0.2426 0.4634 39 1 5.9742 0.3980 2.2368 40 1 7.2110 2.2686 1.1794 41 1 5.7582 2.8585 2.0216 42 1 5.9730 2.2893 -0.9695 43 1 5.9737 3.9026 -0.2170 44 1 2.6923 3.0805 -1.6336 45 1 4.5236 5.3241 -1.0849 46 1 2.8522 5.2151 -0.4827 47 1 1.0523 5.3636 -2.1316 48 1 2.4423 7.3891 -1.7423 49 1 4.0962 7.3541 -2.3992 50 1 3.5421 6.1536 -5.0292 51 1 3.0870 7.6576 -5.8658 52 1 4.4662 7.6473 -4.7410 53 1 1.8032 9.2694 -2.8452 54 1 3.3583 9.5242 -3.6729 55 1 1.5184 12.6607 -4.2532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521426708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:39 Heat of formation + Delta-G solvation = -104.514883 kcal Electronic energy + Delta-G solvation = -27074.583181 eV Core-core repulsion = 23529.830244 eV Total energy + Delta-G solvation = -3544.752937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.53352 -39.34474 -37.24392 -35.79720 -35.36716 -34.62354 -31.85456 -31.46679 -29.86103 -28.82798 -27.31524 -26.67006 -25.16310 -23.57635 -22.61552 -22.22621 -21.72926 -21.38942 -20.61338 -18.57235 -17.53691 -17.19946 -16.73287 -16.67236 -16.18756 -16.00016 -15.75205 -15.47534 -15.34661 -15.04650 -14.88765 -14.78698 -14.25840 -13.99771 -13.81598 -13.72324 -13.47335 -13.37398 -13.15491 -13.10552 -12.79183 -12.69870 -12.57537 -12.54441 -12.38273 -12.23858 -12.08170 -12.00433 -11.94855 -11.79170 -11.61695 -11.50142 -11.42707 -11.33084 -11.03901 -10.77793 -10.62188 -10.61062 -9.33391 -8.97622 -8.21372 -6.31391 1.40500 1.43953 1.51879 2.39749 2.92361 3.10957 3.40382 3.65860 3.70182 3.78149 3.91547 3.99186 4.11792 4.15587 4.23207 4.30600 4.34171 4.37391 4.38695 4.47270 4.53699 4.56876 4.63000 4.64439 4.68100 4.71934 4.75615 4.78356 4.82823 4.95296 4.98374 5.04092 5.05637 5.11688 5.13734 5.16265 5.19702 5.23524 5.29519 5.31880 5.32817 5.38151 5.41260 5.46231 5.50947 5.60242 5.63876 6.03395 6.14195 6.31267 6.51421 6.62280 6.84315 6.93670 7.38261 8.89505 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.002365 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.022747 B =11836.605212 C =12780.881012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.117 4.117 4 C -0.081 4.081 5 H 0.071 0.929 6 C -0.109 4.109 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.106 4.106 10 C 0.095 3.905 11 H 0.036 0.964 12 N -0.688 5.688 13 C 0.041 3.959 14 C 0.130 3.870 15 H 0.094 0.906 16 O -0.559 6.559 17 C 0.025 3.975 18 N -0.538 5.538 19 C 0.041 3.959 20 C 0.208 3.792 21 C -0.524 4.524 22 H 0.061 0.939 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.970 3.030 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.268 1.268 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.348 0.652 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.378 0.622 48 H 0.067 0.933 49 H 0.031 0.969 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.010 0.990 53 H 0.004 0.996 54 H -0.040 1.040 55 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -25.283 13.430 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.147 4.147 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.144 4.144 10 C -0.015 4.015 11 H 0.054 0.946 12 N -0.322 5.322 13 C -0.089 4.089 14 C 0.070 3.930 15 H 0.112 0.888 16 O -0.364 6.364 17 C -0.104 4.104 18 N -0.262 5.262 19 C -0.107 4.107 20 C 0.081 3.919 21 C -0.562 4.562 22 H 0.079 0.921 23 C -0.197 4.197 24 N -0.576 5.576 25 Si 0.794 3.206 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.193 1.193 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.170 0.830 45 H 0.096 0.904 46 H 0.056 0.944 47 H 0.226 0.774 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.028 0.972 53 H 0.022 0.978 54 H -0.022 1.022 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.643 -25.577 12.537 29.038 hybrid contribution -0.504 1.840 0.567 1.990 sum 5.139 -23.737 13.104 27.597 Atomic orbital electron populations 1.21793 0.95950 1.01848 1.01635 1.21517 0.95729 0.96155 1.02299 1.21688 0.94724 0.97634 1.01458 1.21254 0.94904 0.94863 0.98989 0.91064 1.21587 0.95549 1.01250 0.96318 1.21539 0.95500 0.96351 1.02161 1.21527 1.00545 0.96534 0.96922 1.21508 0.94437 1.00422 0.98067 1.21545 0.95439 0.94804 0.89662 0.94580 1.60459 1.34488 1.04085 1.33203 1.22505 1.01255 0.89143 0.96035 1.21760 0.83777 0.90162 0.97317 0.88829 1.86558 1.18525 1.78386 1.52968 1.22813 0.98189 0.96647 0.92787 1.61934 1.47275 1.13345 1.03623 1.22213 0.93005 1.00392 0.95100 1.19396 0.93196 0.82885 0.96392 1.21436 1.36466 0.92867 1.05451 0.92087 1.25922 0.96874 0.96943 0.99963 1.70078 1.48422 1.03447 1.35617 0.85430 0.79134 0.76936 0.79097 1.19339 1.20700 1.19259 0.93271 0.92236 0.92806 0.92157 0.91099 0.92287 0.92532 0.90653 0.92156 0.91999 0.91092 0.91461 0.92244 0.92064 0.93158 0.82979 0.90410 0.94424 0.77414 0.91466 0.95108 0.90664 0.92611 0.97166 0.97792 1.02233 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.50 5.69 30.59 0.17 -1.33 16 3 C -0.12 -1.68 4.55 30.59 0.14 -1.54 16 4 C -0.08 -1.19 1.85 -10.79 -0.02 -1.21 16 5 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 6 C -0.11 -1.30 4.96 30.59 0.15 -1.15 16 7 C -0.12 -1.38 5.92 30.59 0.18 -1.20 16 8 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 9 C -0.11 -1.84 5.43 30.59 0.17 -1.67 16 10 C 0.09 1.67 1.97 44.91 0.09 1.76 16 11 H 0.04 0.68 7.80 -2.38 -0.02 0.66 16 12 N -0.69 -14.41 6.31 -491.57 -3.10 -17.51 16 13 C 0.04 0.93 5.16 86.30 0.44 1.37 16 14 C 0.13 3.69 3.08 30.59 0.09 3.78 16 15 H 0.09 2.86 6.55 -2.39 -0.02 2.84 16 16 O -0.56 -16.62 12.72 -148.98 -1.90 -18.51 16 17 C 0.02 0.88 4.62 86.30 0.40 1.28 16 18 N -0.54 -23.91 4.62 -927.07 -4.28 -28.20 16 19 C 0.04 1.67 9.14 127.69 1.17 2.84 16 20 C 0.21 11.35 4.72 85.56 0.40 11.75 16 21 C -0.52 -30.48 8.46 25.60 0.22 -30.26 16 22 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 23 C 0.00 0.05 5.46 84.65 0.46 0.51 16 24 N -0.94 -57.03 13.29 21.45 0.28 -56.75 16 25 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.77 6.57 -2.39 -0.02 0.75 16 34 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 0.94 6.03 -2.39 -0.01 0.92 16 36 H 0.07 0.77 6.57 -2.39 -0.02 0.76 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 0.96 7.45 -2.38 -0.02 0.94 16 44 H 0.35 7.38 5.66 -89.69 -0.51 6.87 16 45 H 0.08 1.78 7.43 -2.39 -0.02 1.76 16 46 H 0.04 0.81 8.05 -2.39 -0.02 0.79 16 47 H 0.38 9.22 9.05 -74.05 -0.67 8.55 16 48 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 49 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 50 H 0.07 2.64 6.47 -2.39 -0.02 2.62 16 51 H 0.06 2.45 6.76 -2.39 -0.02 2.43 16 52 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 53 H 0.00 0.23 7.93 -2.39 -0.02 0.21 16 54 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 55 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.92 412.41 -2.35 -67.27 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.34 Total: 24.39 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.96 Total: -17.77 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -7.10 Total: -102.46 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.90 Total: -18.51 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.92 -2.35 -67.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521426708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.243 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds