Wall clock time and date at job start Tue Mar 31 2020 10:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99812 * 2 1 4 4 C 1.50703 * 109.47086 * 293.95328 * 3 2 1 5 5 H 1.08003 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99909 * 180.02562 * 4 3 2 7 7 N 1.31507 * 119.99979 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99686 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47262 * 90.00107 * 8 6 4 10 10 H 1.48500 * 109.46931 * 209.99720 * 8 6 4 11 11 H 1.48501 * 109.47674 * 329.99731 * 8 6 4 12 12 C 1.46896 * 110.99796 * 123.95116 * 2 1 3 13 13 C 1.53001 * 109.47200 * 66.05013 * 12 2 1 14 14 H 1.08996 * 109.47177 * 304.99379 * 13 12 2 15 15 O 1.42897 * 109.46879 * 65.00008 * 13 12 2 16 16 C 1.53000 * 109.47197 * 184.99696 * 13 12 2 17 17 N 1.46894 * 109.47296 * 179.97438 * 16 13 12 18 18 C 1.46899 * 111.00353 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47608 * 184.30206 * 18 17 16 20 20 C 1.52997 * 108.85086 * 64.00134 * 19 18 17 21 21 C 1.50472 * 108.80055 * 182.51707 * 19 18 17 22 22 C 1.54242 * 108.52607 * 214.87577 * 21 19 18 23 23 C 1.45545 * 112.39854 * 280.01593 * 22 21 19 24 24 C 1.54233 * 112.40988 * 61.93782 * 23 22 21 25 25 C 1.50481 * 108.51848 * 280.00472 * 24 23 22 26 26 C 1.54065 * 112.49645 * 94.15260 * 25 24 23 27 27 H 1.08996 * 109.47574 * 296.04483 * 1 2 3 28 28 H 1.08999 * 109.47172 * 56.05131 * 1 2 3 29 29 H 1.09004 * 109.46900 * 176.04913 * 1 2 3 30 30 H 1.09007 * 109.47275 * 53.95102 * 3 2 1 31 31 H 1.08997 * 109.47296 * 173.95469 * 3 2 1 32 32 H 0.97002 * 120.00203 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.47600 * 306.04678 * 12 2 1 34 34 H 1.09007 * 109.46983 * 186.05085 * 12 2 1 35 35 H 0.96698 * 114.00483 * 60.00389 * 15 13 12 36 36 H 1.09007 * 109.46989 * 60.00197 * 16 13 12 37 37 H 1.09002 * 109.47132 * 300.00159 * 16 13 12 38 38 H 1.00905 * 110.99946 * 56.04975 * 17 16 13 39 39 H 1.09004 * 109.47259 * 64.29551 * 18 17 16 40 40 H 1.09007 * 109.46971 * 304.30483 * 18 17 16 41 41 H 1.09004 * 109.47254 * 286.11241 * 20 19 18 42 42 H 1.09001 * 109.47660 * 46.11617 * 20 19 18 43 43 H 1.09005 * 109.46867 * 166.11910 * 20 19 18 44 44 H 1.09003 * 109.62936 * 95.16111 * 21 19 18 45 45 H 1.09003 * 109.62506 * 334.58566 * 21 19 18 46 46 H 1.08996 * 108.89664 * 159.26296 * 22 21 19 47 47 H 1.08998 * 108.89483 * 40.76456 * 22 21 19 48 48 H 1.09007 * 108.89363 * 182.68859 * 23 22 21 49 49 H 1.08999 * 108.89734 * 301.17945 * 23 22 21 50 50 H 1.09004 * 109.63552 * 39.70983 * 24 23 22 51 51 H 1.08998 * 109.63411 * 160.29710 * 24 23 22 52 52 H 1.09002 * 108.87530 * 214.92685 * 25 24 23 53 53 H 1.08995 * 108.87993 * 333.47366 * 25 24 23 54 54 H 1.09010 * 108.81548 * 79.14772 * 26 25 24 55 55 H 1.09002 * 108.81398 * 197.42283 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0276 3.3492 -1.5289 7 7 2.7127 4.0015 -0.6154 8 14 1.5838 4.1864 -3.1387 9 1 0.2716 4.8673 -2.9973 10 1 2.6264 5.1871 -3.4800 11 1 1.5004 3.1705 -4.2186 12 6 1.9954 -0.7659 1.1376 13 6 1.6315 -2.2426 0.9704 14 1 0.5532 -2.3389 0.8434 15 8 2.2957 -2.7695 -0.1799 16 6 2.0700 -3.0198 2.2132 17 7 1.7200 -4.4374 2.0529 18 6 2.1265 -5.2164 3.2301 19 6 1.8441 -6.6996 2.9827 20 6 2.7160 -7.1818 1.8216 21 6 2.2079 -7.4755 4.2196 22 6 2.7713 -8.8457 3.7906 23 6 1.7219 -9.7944 3.4486 24 6 0.8710 -9.3237 2.2515 25 6 -0.1338 -8.3182 2.7453 26 6 0.3621 -6.8672 2.5963 27 1 -0.3634 0.4512 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0708 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3445 0.1082 32 1 2.9872 4.9177 -0.7774 33 1 1.5610 -0.3872 2.0629 34 1 3.0797 -0.6610 1.1757 35 1 3.2602 -2.7166 -0.1358 36 1 1.5633 -2.6179 3.0906 37 1 3.1483 -2.9235 2.3403 38 1 2.1253 -4.8169 1.2103 39 1 1.5636 -4.8797 4.1007 40 1 3.1922 -5.0744 3.4095 41 1 2.3198 -6.7926 0.8837 42 1 3.7365 -6.8251 1.9609 43 1 2.7127 -8.2715 1.7930 44 1 1.3200 -7.6210 4.8349 45 1 2.9632 -6.9297 4.7851 46 1 3.3645 -9.2551 4.6082 47 1 3.4172 -8.7061 2.9238 48 1 2.1792 -10.7526 3.2015 49 1 1.0716 -9.9283 4.3130 50 1 1.5151 -8.8606 1.5038 51 1 0.3513 -10.1760 1.8138 52 1 -1.0575 -8.4351 2.1785 53 1 -0.3394 -8.5128 3.7978 54 1 0.2317 -6.5557 1.5598 55 1 -0.2425 -6.2219 3.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570323074.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:35 Heat of formation + Delta-G solvation = -66.202518 kcal Electronic energy + Delta-G solvation = -27163.011228 eV Core-core repulsion = 23619.919640 eV Total energy + Delta-G solvation = -3543.091588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.22727 -39.56077 -37.50228 -36.33163 -34.63182 -33.67232 -33.19632 -30.99850 -29.09292 -28.86137 -27.79755 -26.38820 -25.74307 -24.59467 -22.87996 -22.60180 -21.77677 -20.89936 -18.95656 -18.58084 -17.73929 -17.23380 -16.74252 -16.71609 -16.59796 -16.03181 -15.80987 -15.59123 -15.30953 -15.08165 -14.89226 -14.69549 -14.13643 -13.88430 -13.81184 -13.76685 -13.48622 -13.33329 -13.20531 -13.03541 -12.87282 -12.73722 -12.59571 -12.55798 -12.47639 -12.39147 -12.05979 -11.96489 -11.62668 -11.54525 -11.41241 -11.32238 -11.11454 -11.04060 -10.96654 -10.69676 -10.63077 -10.41632 -9.29627 -8.97596 -8.21652 -6.31554 1.40443 1.41872 1.53990 2.39648 2.96135 3.10704 3.46601 3.68040 3.72839 3.84081 3.87477 4.02502 4.10629 4.18503 4.24107 4.27733 4.31084 4.42376 4.44145 4.49148 4.53843 4.55427 4.67739 4.71687 4.75915 4.75927 4.79993 4.84636 4.89496 4.92071 5.05270 5.08184 5.14953 5.15355 5.16531 5.21829 5.23922 5.31295 5.38032 5.40056 5.42854 5.46308 5.54042 5.55468 5.63909 5.70842 5.76044 6.02970 6.10407 6.31014 6.50764 6.62545 6.84317 6.94369 7.38056 8.89320 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.036754 B = 0.002039 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.631328 B =13731.201165 C =13920.251555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.025 3.975 13 C 0.130 3.870 14 H 0.094 0.906 15 O -0.560 6.560 16 C 0.038 3.962 17 N -0.685 5.685 18 C 0.068 3.932 19 C -0.048 4.048 20 C -0.174 4.174 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.116 4.116 26 C -0.089 4.089 27 H 0.011 0.989 28 H 0.055 0.945 29 H 0.076 0.924 30 H -0.040 1.040 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.378 0.622 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.347 0.653 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.061 0.939 52 H 0.053 0.947 53 H 0.056 0.944 54 H 0.054 0.946 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.732 -28.487 10.561 30.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.104 4.104 13 C 0.070 3.930 14 H 0.111 0.889 15 O -0.365 6.365 16 C -0.092 4.092 17 N -0.318 5.318 18 C -0.061 4.061 19 C -0.048 4.048 20 C -0.230 4.230 21 C -0.142 4.142 22 C -0.172 4.172 23 C -0.152 4.152 24 C -0.176 4.176 25 C -0.154 4.154 26 C -0.127 4.127 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.094 0.906 30 H -0.022 1.022 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.226 0.774 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.167 0.833 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.105 0.895 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.075 0.925 54 H 0.072 0.928 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.750 -28.573 10.194 30.388 hybrid contribution 1.097 1.675 0.403 2.042 sum -0.653 -26.898 10.597 28.918 Atomic orbital electron populations 1.22232 0.87869 1.01077 0.99653 1.61947 1.07964 1.14890 1.41620 1.19395 0.93615 0.83922 0.94927 1.21468 1.34789 0.97517 1.02389 0.92087 1.25934 0.95020 0.98057 1.00816 1.70079 1.39344 1.11868 1.36209 0.85363 0.77988 0.78054 0.79098 1.19765 1.20596 1.19025 1.22831 1.00158 0.95438 0.92005 1.21769 0.97649 0.88711 0.84861 0.88859 1.86568 1.23987 1.83684 1.42265 1.22480 0.98777 0.89747 0.98198 1.60393 1.64404 1.01211 1.05768 1.22230 0.97592 0.93165 0.93077 1.20197 0.95573 0.92964 0.96061 1.22831 0.98824 1.03903 0.97421 1.21333 1.00756 0.95760 0.96387 1.20766 0.99091 0.94961 1.02410 1.20450 0.97858 0.98813 0.98043 1.21784 0.98422 0.98598 0.98809 1.21329 0.98436 0.94609 1.00999 1.21763 0.94224 0.95530 1.01144 0.97073 0.92579 0.90588 1.02191 0.97806 0.92665 0.95032 0.91446 0.77414 0.90308 0.94396 0.83255 0.91741 0.95272 0.93221 0.93126 0.87917 0.91920 0.91910 0.92201 0.89800 0.91928 0.92669 0.89521 0.92056 0.92842 0.92485 0.92767 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.78 16 2 N -0.54 -24.00 4.70 -927.03 -4.36 -28.36 16 3 C 0.21 11.34 4.72 85.56 0.40 11.75 16 4 C -0.52 -30.44 8.46 25.60 0.22 -30.23 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 7 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 8 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.02 0.87 4.59 86.30 0.40 1.27 16 13 C 0.13 3.65 3.19 30.59 0.10 3.75 16 14 H 0.09 2.84 6.34 -2.39 -0.02 2.82 16 15 O -0.56 -16.39 12.62 -148.98 -1.88 -18.27 16 16 C 0.04 0.84 5.39 86.30 0.46 1.31 16 17 N -0.68 -13.81 5.83 -513.88 -3.00 -16.80 16 18 C 0.07 1.16 4.21 86.30 0.36 1.52 16 19 C -0.05 -0.68 0.56 -52.64 -0.03 -0.71 16 20 C -0.17 -2.33 5.73 71.98 0.41 -1.92 16 21 C -0.10 -1.31 5.01 30.20 0.15 -1.16 16 22 C -0.14 -1.45 5.14 28.74 0.15 -1.30 16 23 C -0.11 -1.21 5.21 28.73 0.15 -1.06 16 24 C -0.14 -1.66 5.57 30.20 0.17 -1.49 16 25 C -0.12 -1.62 5.32 30.14 0.16 -1.46 16 26 C -0.09 -1.45 4.32 31.32 0.14 -1.31 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 2.45 6.76 -2.39 -0.02 2.43 16 29 H 0.08 2.63 6.37 -2.39 -0.02 2.61 16 30 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 31 H 0.00 0.22 7.93 -2.39 -0.02 0.21 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.03 1.09 8.12 -2.38 -0.02 1.07 16 34 H 0.07 2.34 7.93 -2.38 -0.02 2.32 16 35 H 0.38 8.89 9.05 -74.06 -0.67 8.22 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.35 7.12 6.46 -89.69 -0.58 6.54 16 39 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.03 0.49 8.05 -2.38 -0.02 0.47 16 41 H 0.05 0.76 6.81 -2.38 -0.02 0.74 16 42 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 43 H 0.10 1.18 2.68 -2.38 -0.01 1.18 16 44 H 0.06 0.83 6.97 -2.39 -0.02 0.81 16 45 H 0.06 0.78 7.70 -2.39 -0.02 0.76 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 0.87 4.83 -2.39 -0.01 0.86 16 48 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.05 0.61 7.47 -2.39 -0.02 0.59 16 50 H 0.09 1.06 4.26 -2.38 -0.01 1.05 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 52 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 53 H 0.06 0.78 6.63 -2.39 -0.02 0.76 16 54 H 0.05 1.03 7.59 -2.38 -0.02 1.02 16 55 H 0.05 0.88 7.98 -2.39 -0.02 0.86 16 Total: -1.00 -65.02 395.93 -2.44 -67.47 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -0.39 Total: 23.33 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.87 Total: -17.83 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -7.07 Total: -101.77 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.88 Total: -18.27 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.02 -2.44 -67.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570323074.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds