Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47494 * 2 1 4 4 C 1.53005 * 109.46762 * 240.00214 * 2 1 3 5 5 C 1.53007 * 109.46876 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47424 * 300.00182 * 5 4 2 7 7 C 1.53005 * 109.46876 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46952 * 60.00614 * 5 4 2 9 9 C 1.53003 * 109.46592 * 299.99715 * 8 5 4 10 10 C 1.52997 * 109.47452 * 60.00137 * 9 8 5 11 11 H 1.09004 * 109.47012 * 59.99625 * 10 9 8 12 12 N 1.46904 * 109.47149 * 179.97438 * 10 9 8 13 13 C 1.46906 * 110.99827 * 275.00051 * 12 10 9 14 14 C 1.52994 * 109.47087 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47441 * 59.99507 * 14 13 12 16 16 O 1.42902 * 109.46864 * 300.00377 * 14 13 12 17 17 C 1.52996 * 109.47260 * 180.02562 * 14 13 12 18 18 N 1.46904 * 109.47077 * 182.15752 * 17 14 13 19 19 C 1.46898 * 110.99908 * 199.76558 * 18 17 14 20 20 C 1.46900 * 111.00050 * 75.81339 * 18 17 14 21 21 C 1.50702 * 109.47222 * 189.99964 * 20 18 17 22 22 H 1.08004 * 119.99507 * 359.97438 * 21 20 18 23 23 C 1.37874 * 120.00060 * 180.02562 * 21 20 18 24 24 N 1.31510 * 119.99843 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99973 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47359 * 90.00411 * 25 23 21 27 27 H 1.48507 * 109.47210 * 330.00136 * 25 23 21 28 28 H 1.48501 * 109.47118 * 210.00603 * 25 23 21 29 29 H 1.09002 * 109.47378 * 299.99349 * 1 2 3 30 30 H 1.09003 * 109.47483 * 59.99671 * 1 2 3 31 31 H 1.09001 * 109.47494 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47056 * 60.00258 * 4 2 1 33 33 H 1.09000 * 109.47421 * 299.99526 * 4 2 1 34 34 H 1.08996 * 109.47066 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.47001 * 300.00157 * 6 5 4 36 36 H 1.09002 * 109.46578 * 59.99695 * 6 5 4 37 37 H 1.09001 * 109.46941 * 300.00449 * 7 5 4 38 38 H 1.09003 * 109.47028 * 60.00161 * 7 5 4 39 39 H 1.08991 * 109.46669 * 180.02562 * 7 5 4 40 40 H 1.08993 * 109.46861 * 180.02562 * 8 5 4 41 41 H 1.08993 * 109.47199 * 59.99243 * 8 5 4 42 42 H 1.09004 * 109.47318 * 299.99949 * 9 8 5 43 43 H 1.09003 * 109.46792 * 180.02562 * 9 8 5 44 44 H 1.00892 * 110.99979 * 38.95370 * 12 10 9 45 45 H 1.09002 * 109.46935 * 59.99926 * 13 12 10 46 46 H 1.09000 * 109.46777 * 300.00334 * 13 12 10 47 47 H 0.96703 * 113.99436 * 299.99377 * 16 14 13 48 48 H 1.09000 * 109.47284 * 62.15719 * 17 14 13 49 49 H 1.09007 * 109.46991 * 302.15682 * 17 14 13 50 50 H 1.09000 * 109.47301 * 291.01325 * 19 18 17 51 51 H 1.09004 * 109.47262 * 51.00584 * 19 18 17 52 52 H 1.08994 * 109.47477 * 171.01198 * 19 18 17 53 53 H 1.08999 * 109.46943 * 69.99630 * 20 18 17 54 54 H 1.09000 * 109.47317 * 310.00014 * 20 18 17 55 55 H 0.96999 * 120.00139 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0795 0.7219 -1.2499 7 6 4.0798 -1.4425 -2.4987 8 6 4.0804 -1.4418 -0.0005 9 6 3.5704 -0.7206 1.2488 10 6 2.0404 -0.7210 1.2491 11 1 1.6774 -1.7488 1.2493 12 7 1.5508 -0.0290 2.4490 13 6 1.4886 -0.9446 3.5961 14 6 0.9749 -0.1898 4.8238 15 1 -0.0207 0.2035 4.6182 16 8 1.8609 0.8905 5.1239 17 6 0.9107 -1.1431 6.0187 18 7 0.3688 -0.4317 7.1841 19 6 0.7147 -1.1253 8.4319 20 6 -1.0848 -0.2563 7.0648 21 6 -1.5678 0.6808 8.1417 22 1 -0.8652 1.1034 8.8447 23 6 -2.9068 0.9977 8.2301 24 7 -3.3282 1.8158 9.1696 25 14 -4.1219 0.2660 7.0147 26 1 -4.6452 -1.0168 7.5492 27 1 -3.4391 0.0206 5.7189 28 1 -5.2475 1.2127 6.8094 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6765 -0.2073 -2.1392 33 1 1.6766 -1.7489 -1.2494 34 1 5.1694 0.7223 -1.2506 35 1 3.7157 1.2356 -2.1399 36 1 3.7161 1.2357 -0.3599 37 1 3.7168 -2.4703 -2.4980 38 1 3.7161 -0.9292 -3.3889 39 1 5.1698 -1.4425 -2.4987 40 1 5.1704 -1.4410 -0.0005 41 1 3.7174 -2.4695 -0.0003 42 1 3.9334 0.3073 1.2487 43 1 3.9345 -1.2340 2.1387 44 1 2.1207 0.7764 2.6597 45 1 2.4842 -1.3381 3.8013 46 1 0.8124 -1.7683 3.3672 47 1 2.7670 0.6137 5.3176 48 1 1.9125 -1.5061 6.2481 49 1 0.2651 -1.9872 5.7758 50 1 0.1715 -2.0688 8.4858 51 1 1.7867 -1.3217 8.4534 52 1 0.4427 -0.5004 9.2825 53 1 -1.5776 -1.2222 7.1758 54 1 -1.3213 0.1619 6.0864 55 1 -4.2702 2.0385 9.2320 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575053183.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = -95.984957 kcal Electronic energy + Delta-G solvation = -27574.657537 eV Core-core repulsion = 24030.274485 eV Total energy + Delta-G solvation = -3544.383052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.92658 -39.46218 -37.46428 -36.22123 -34.59540 -33.84821 -32.29827 -30.75458 -29.81021 -28.19179 -27.43702 -27.31154 -25.69771 -24.50691 -23.04994 -22.56645 -21.69657 -21.13077 -19.42985 -19.04611 -17.41418 -17.12216 -16.62974 -16.40830 -16.07155 -15.86976 -15.72640 -15.52117 -15.29060 -14.96696 -14.71179 -14.67041 -14.48626 -14.10157 -13.70897 -13.36904 -13.31243 -13.20437 -13.13912 -13.08792 -12.93748 -12.66739 -12.63173 -12.61974 -12.54124 -12.48274 -12.16046 -11.95902 -11.82856 -11.82370 -11.65053 -11.62105 -11.43229 -11.07888 -11.01233 -10.97216 -10.79079 -10.63368 -9.16147 -8.96591 -8.28656 -6.31253 1.31390 1.34924 1.45395 2.33422 2.93306 3.04880 3.40935 3.71148 3.72793 3.75566 3.91583 4.04727 4.06368 4.18095 4.23471 4.33615 4.41046 4.43720 4.46360 4.52252 4.58009 4.59136 4.61372 4.69243 4.70968 4.76457 4.81143 4.87127 4.89772 4.91939 4.94883 5.00032 5.04336 5.09842 5.11916 5.14210 5.18898 5.20690 5.22473 5.24166 5.32223 5.39498 5.47129 5.53958 5.55985 5.61050 5.68393 5.97688 6.20350 6.38489 6.54616 6.66175 6.74752 7.05867 7.31916 8.88269 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.020442 B = 0.002733 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.388182 B =10241.535295 C =11034.839293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.066 0.934 4 C -0.098 4.098 5 C -0.064 4.064 6 C -0.144 4.144 7 C -0.140 4.140 8 C -0.100 4.100 9 C -0.144 4.144 10 C 0.098 3.902 11 H 0.068 0.932 12 N -0.689 5.689 13 C 0.046 3.954 14 C 0.123 3.877 15 H 0.067 0.933 16 O -0.559 6.559 17 C 0.024 3.976 18 N -0.542 5.542 19 C 0.043 3.957 20 C 0.174 3.826 21 C -0.514 4.514 22 H 0.036 0.964 23 C 0.006 3.994 24 N -0.948 5.948 25 Si 0.945 3.055 26 H -0.265 1.265 27 H -0.252 1.252 28 H -0.280 1.280 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.346 0.654 45 H 0.051 0.949 46 H 0.076 0.924 47 H 0.378 0.622 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.017 0.983 51 H 0.083 0.917 52 H 0.043 0.957 53 H -0.016 1.016 54 H 0.025 0.975 55 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.427 -10.296 -24.780 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 H 0.085 0.915 4 C -0.136 4.136 5 C -0.064 4.064 6 C -0.201 4.201 7 C -0.197 4.197 8 C -0.139 4.139 9 C -0.183 4.183 10 C -0.011 4.011 11 H 0.087 0.913 12 N -0.319 5.319 13 C -0.084 4.084 14 C 0.062 3.938 15 H 0.085 0.915 16 O -0.365 6.365 17 C -0.104 4.104 18 N -0.265 5.265 19 C -0.105 4.105 20 C 0.047 3.953 21 C -0.552 4.552 22 H 0.054 0.946 23 C -0.191 4.191 24 N -0.589 5.589 25 Si 0.769 3.231 26 H -0.190 1.190 27 H -0.176 1.176 28 H -0.206 1.206 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.165 0.835 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.225 0.775 48 H 0.114 0.886 49 H 0.056 0.944 50 H 0.035 0.965 51 H 0.102 0.898 52 H 0.062 0.938 53 H 0.001 0.999 54 H 0.043 0.957 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.278 -9.478 -24.941 31.255 hybrid contribution -0.007 -1.091 0.508 1.203 sum 16.271 -10.569 -24.433 31.199 Atomic orbital electron populations 1.21666 0.95591 1.01033 1.01102 1.21056 0.95280 0.99488 0.93581 0.91541 1.21629 0.94521 1.00425 0.97067 1.20537 0.94879 0.95718 0.95268 1.21957 1.00802 0.95545 1.01765 1.21843 1.01045 1.00107 0.96685 1.21504 1.00333 0.98794 0.93225 1.22246 0.96210 1.01396 0.98451 1.21590 0.92572 0.97258 0.89730 0.91345 1.60399 1.58272 1.09771 1.03495 1.22450 1.00347 0.95287 0.90362 1.21769 0.93596 0.87174 0.91217 0.91453 1.86665 1.23692 1.34098 1.92028 1.22860 1.00855 0.95038 0.91685 1.61731 1.13154 1.49418 1.02228 1.22195 1.00359 0.95611 0.92338 1.19950 0.85371 0.93842 0.96160 1.21270 0.93095 1.26905 1.13930 0.94556 1.25854 1.00402 0.95394 0.97459 1.70048 1.16191 1.37256 1.35426 0.85739 0.78501 0.78640 0.80232 1.19022 1.17584 1.20555 0.93220 0.93082 0.93609 0.91685 0.92107 0.92573 0.92754 0.92603 0.92609 0.92515 0.92376 0.91594 0.92046 0.91521 0.92224 0.83471 0.93129 0.90599 0.77469 0.88575 0.94378 0.96476 0.89818 0.93812 0.99867 0.95718 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.04 71.98 0.65 -2.04 16 2 C -0.08 -1.26 2.16 -10.80 -0.02 -1.28 16 3 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 4 C -0.10 -1.35 4.01 30.60 0.12 -1.22 16 5 C -0.06 -0.76 0.77 -52.18 -0.04 -0.80 16 6 C -0.14 -1.76 7.78 71.98 0.56 -1.20 16 7 C -0.14 -1.43 8.47 71.98 0.61 -0.82 16 8 C -0.10 -1.22 4.73 30.60 0.14 -1.07 16 9 C -0.14 -2.01 4.90 30.59 0.15 -1.86 16 10 C 0.10 1.67 1.91 44.91 0.09 1.76 16 11 H 0.07 1.24 7.80 -2.38 -0.02 1.22 16 12 N -0.69 -14.60 5.49 -491.56 -2.70 -17.29 16 13 C 0.05 0.97 5.19 86.30 0.45 1.42 16 14 C 0.12 3.60 3.31 30.59 0.10 3.70 16 15 H 0.07 2.54 6.73 -2.38 -0.02 2.52 16 16 O -0.56 -16.99 12.58 -148.98 -1.87 -18.86 16 17 C 0.02 0.74 4.65 86.30 0.40 1.14 16 18 N -0.54 -22.48 4.59 -927.04 -4.25 -26.73 16 19 C 0.04 1.62 9.31 127.69 1.19 2.81 16 20 C 0.17 8.64 3.62 85.56 0.31 8.94 16 21 C -0.51 -30.88 9.13 25.60 0.23 -30.65 16 22 H 0.04 2.43 7.34 -2.91 -0.02 2.41 16 23 C 0.01 0.36 5.47 84.65 0.46 0.82 16 24 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 25 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 29 H 0.05 1.20 7.61 -2.39 -0.02 1.19 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.77 4.81 -2.39 -0.01 0.76 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.97 6.42 -2.38 -0.02 0.96 16 43 H 0.06 0.83 7.45 -2.39 -0.02 0.82 16 44 H 0.35 7.53 7.86 -89.70 -0.71 6.82 16 45 H 0.05 0.87 7.44 -2.39 -0.02 0.85 16 46 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 47 H 0.38 8.07 9.04 -74.06 -0.67 7.40 16 48 H 0.10 2.28 7.75 -2.39 -0.02 2.27 16 49 H 0.04 1.13 8.00 -2.38 -0.02 1.11 16 50 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 51 H 0.08 2.47 7.85 -2.38 -0.02 2.45 16 52 H 0.04 1.92 7.01 -2.39 -0.02 1.90 16 53 H -0.02 -0.79 7.50 -2.39 -0.02 -0.81 16 54 H 0.02 1.25 5.66 -2.39 -0.01 1.24 16 55 H 0.27 15.95 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -69.98 405.99 -1.82 -71.80 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.59 Total: 24.64 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.41 Total: -20.36 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.65 Total: -104.73 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.87 Total: -18.86 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -69.98 -1.82 -71.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575053183.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.185 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds