Wall clock time and date at job start Tue Mar 31 2020 10:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46776 * 2 1 4 4 C 1.52999 * 109.47366 * 240.00109 * 2 1 3 5 5 C 1.52998 * 109.46966 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46882 * 60.00687 * 5 4 2 7 7 C 1.53006 * 109.47056 * 299.99059 * 6 5 4 8 8 C 1.52998 * 109.47043 * 119.99940 * 2 1 3 9 9 H 1.09003 * 109.47285 * 60.00372 * 8 2 1 10 10 C 1.52996 * 109.47402 * 299.99987 * 8 2 1 11 11 C 1.53003 * 109.47493 * 174.99984 * 10 8 2 12 12 N 1.46894 * 109.47113 * 180.02562 * 11 10 8 13 13 C 1.46910 * 110.99992 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.47335 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46919 * 305.00185 * 14 13 12 16 16 O 1.42894 * 109.47342 * 64.99939 * 14 13 12 17 17 C 1.52999 * 109.47264 * 185.00409 * 14 13 12 18 18 N 1.46894 * 109.47459 * 178.50917 * 17 14 13 19 19 C 1.46897 * 111.00460 * 164.00662 * 18 17 14 20 20 C 1.46907 * 110.99984 * 287.96210 * 18 17 14 21 21 C 1.50695 * 109.47149 * 169.99943 * 20 18 17 22 22 H 1.08005 * 119.99898 * 359.97438 * 21 20 18 23 23 C 1.37879 * 120.00112 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99750 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00186 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47392 * 59.99326 * 25 23 21 27 27 H 1.48497 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46592 * 299.99305 * 25 23 21 29 29 H 1.09003 * 109.47588 * 299.99636 * 1 2 3 30 30 H 1.08998 * 109.47562 * 60.00037 * 1 2 3 31 31 H 1.09005 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47034 * 300.00400 * 4 2 1 33 33 H 1.09005 * 109.46753 * 59.99799 * 4 2 1 34 34 H 1.09000 * 109.46607 * 179.97438 * 5 4 2 35 35 H 1.08990 * 109.47468 * 299.99692 * 5 4 2 36 36 H 1.08999 * 109.46951 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.47527 * 59.99605 * 6 5 4 38 38 H 1.09003 * 109.47245 * 300.00824 * 7 6 5 39 39 H 1.08993 * 109.47443 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.47176 * 295.00422 * 10 8 2 41 41 H 1.09000 * 109.47002 * 55.00109 * 10 8 2 42 42 H 1.08995 * 109.46994 * 300.00395 * 11 10 8 43 43 H 1.09000 * 109.46895 * 60.00059 * 11 10 8 44 44 H 1.00904 * 111.00613 * 56.04773 * 12 11 10 45 45 H 1.08999 * 109.46893 * 300.00310 * 13 12 11 46 46 H 1.09000 * 109.46433 * 59.99873 * 13 12 11 47 47 H 0.96700 * 114.00166 * 59.99897 * 16 14 13 48 48 H 1.09003 * 109.46636 * 298.50698 * 17 14 13 49 49 H 1.09001 * 109.47091 * 58.50249 * 17 14 13 50 50 H 1.09003 * 109.46934 * 65.48537 * 19 18 17 51 51 H 1.08996 * 109.47355 * 185.48631 * 19 18 17 52 52 H 1.09006 * 109.47088 * 305.48846 * 19 18 17 53 53 H 1.09001 * 109.46790 * 290.00080 * 20 18 17 54 54 H 1.08996 * 109.46759 * 49.99735 * 20 18 17 55 55 H 0.96992 * 119.99960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0804 -1.4416 -0.0003 7 6 3.5705 -0.7204 1.2491 8 6 2.0399 -0.7212 1.2492 9 1 1.6767 -1.7489 1.2492 10 6 1.5300 0.0000 2.4985 11 6 1.9347 -0.7902 3.7446 12 7 1.4445 -0.0980 4.9439 13 6 1.8149 -0.8300 6.1626 14 6 1.2878 -0.0805 7.3878 15 1 1.6523 0.9466 7.3700 16 8 -0.1410 -0.0793 7.3672 17 6 1.7789 -0.7739 8.6602 18 7 1.3025 -0.0339 9.8363 19 6 1.4184 -0.8483 11.0533 20 6 2.0211 1.2388 9.9841 21 6 1.3481 2.0758 11.0411 22 1 0.4737 1.7001 11.5518 23 6 1.8479 3.3218 11.3557 24 7 2.9123 3.7795 10.7335 25 14 1.0140 4.3590 12.6664 26 1 1.0299 3.6292 13.9595 27 1 1.7404 5.6456 12.8157 28 1 -0.3908 4.6267 12.2662 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1392 34 1 3.9333 -1.2348 -2.1392 35 1 3.9330 0.3071 -1.2497 36 1 5.1704 -1.4408 -0.0002 37 1 3.7175 -2.4694 -0.0001 38 1 3.9334 0.3074 1.2489 39 1 3.9344 -1.2337 2.1390 40 1 1.9646 0.9986 2.5444 41 1 0.4437 0.0782 2.4548 42 1 1.5002 -1.7887 3.6986 43 1 3.0210 -0.8684 3.7882 44 1 0.4466 0.0440 4.8971 45 1 1.3795 -1.8288 6.1330 46 1 2.9004 -0.9085 6.2234 47 1 -0.5353 -0.9621 7.3813 48 1 1.3926 -1.7927 8.6909 49 1 2.8687 -0.7984 8.6631 50 1 2.4708 -1.0382 11.2645 51 1 0.9701 -0.3150 11.8915 52 1 0.9005 -1.7962 10.9069 53 1 3.0520 1.0419 10.2783 54 1 2.0102 1.7745 9.0349 55 1 3.2642 4.6558 10.9550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591739147.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:19 Heat of formation + Delta-G solvation = -108.031991 kcal Electronic energy + Delta-G solvation = -26470.061356 eV Core-core repulsion = 22925.155906 eV Total energy + Delta-G solvation = -3544.905450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.23787 -39.54512 -37.54130 -36.36250 -34.60315 -33.92245 -33.16398 -31.16651 -29.44235 -28.85768 -27.21773 -26.35930 -25.16832 -23.93397 -22.83890 -22.09405 -21.69871 -21.40104 -20.58063 -18.61743 -17.53624 -17.28156 -16.60847 -16.48158 -16.14945 -16.03486 -15.63633 -15.40873 -15.20212 -15.09647 -14.99962 -14.84365 -14.56393 -14.06043 -13.91430 -13.66419 -13.55146 -13.13796 -13.04455 -12.90305 -12.78535 -12.62290 -12.56598 -12.50622 -12.43410 -12.31602 -12.28112 -12.15900 -11.99901 -11.74197 -11.63345 -11.48740 -11.33205 -11.27048 -10.87559 -10.72213 -10.62158 -10.59364 -9.33251 -8.95832 -8.19507 -6.29267 1.39848 1.44196 1.51828 2.40816 2.95663 3.12816 3.42826 3.70530 3.75149 3.78611 3.86403 3.99410 4.12932 4.16333 4.22441 4.33013 4.36807 4.40407 4.48511 4.52669 4.55765 4.59145 4.61103 4.62260 4.67534 4.71526 4.77430 4.78940 4.80056 4.88357 4.99752 5.02474 5.07551 5.09988 5.13105 5.16340 5.22883 5.24788 5.27241 5.31705 5.34434 5.36901 5.43551 5.49194 5.54776 5.65041 5.69029 6.06299 6.11400 6.34957 6.47519 6.65018 6.86356 7.05134 7.39849 8.91588 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.002068 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.653003 B =13536.399266 C =13906.401022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.071 4.071 9 H 0.071 0.929 10 C -0.110 4.110 11 C 0.063 3.937 12 N -0.703 5.703 13 C 0.045 3.955 14 C 0.124 3.876 15 H 0.062 0.938 16 O -0.559 6.559 17 C 0.027 3.973 18 N -0.542 5.542 19 C 0.041 3.959 20 C 0.210 3.790 21 C -0.524 4.524 22 H 0.061 0.939 23 C -0.002 4.002 24 N -0.935 5.935 25 Si 0.970 3.030 26 H -0.265 1.265 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.347 0.653 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.379 0.621 48 H 0.098 0.902 49 H 0.026 0.974 50 H 0.007 0.993 51 H 0.054 0.946 52 H 0.084 0.916 53 H -0.043 1.043 54 H 0.003 0.997 55 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -14.989 -23.663 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.079 0.921 4 C -0.149 4.149 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.090 4.090 9 H 0.090 0.910 10 C -0.148 4.148 11 C -0.065 4.065 12 N -0.335 5.335 13 C -0.085 4.085 14 C 0.064 3.936 15 H 0.080 0.920 16 O -0.364 6.364 17 C -0.102 4.102 18 N -0.266 5.266 19 C -0.107 4.107 20 C 0.084 3.916 21 C -0.562 4.562 22 H 0.080 0.920 23 C -0.200 4.200 24 N -0.576 5.576 25 Si 0.795 3.205 26 H -0.190 1.190 27 H -0.208 1.208 28 H -0.195 1.195 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.165 0.835 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.227 0.773 48 H 0.116 0.884 49 H 0.044 0.956 50 H 0.026 0.974 51 H 0.073 0.927 52 H 0.102 0.898 53 H -0.025 1.025 54 H 0.022 0.978 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.468 -13.675 -23.716 27.416 hybrid contribution 0.331 -0.482 0.900 1.073 sum -1.136 -14.157 -22.816 26.875 Atomic orbital electron populations 1.21894 0.95042 1.01958 1.01771 1.21122 0.95643 0.99172 0.94485 0.92142 1.21571 0.95412 1.00683 0.97187 1.21542 0.95756 1.00569 0.97900 1.21528 1.00245 0.99401 0.94378 1.21650 0.95208 1.00523 0.98084 1.21088 0.95139 0.99362 0.93413 0.91023 1.21626 1.01151 0.99070 0.92918 1.22021 1.00268 0.95189 0.89070 1.60326 1.20656 1.50876 1.01624 1.22451 1.01153 0.95317 0.89599 1.21713 0.81045 0.99177 0.91692 0.91966 1.86650 1.18891 1.34124 1.96775 1.22790 0.97485 0.98255 0.91702 1.61947 1.56908 1.04618 1.03135 1.22223 0.98433 0.97105 0.92939 1.19375 0.89826 0.86942 0.95505 1.21453 1.12679 1.01540 1.20513 0.92044 1.25957 0.95743 0.99119 0.99163 1.70086 1.24270 1.19468 1.43760 0.85423 0.78516 0.77521 0.79076 1.19024 1.20752 1.19473 0.92731 0.92459 0.92429 0.91779 0.91699 0.91417 0.92530 0.91977 0.91774 0.92831 0.92082 0.92678 0.91422 0.94653 0.91420 0.83456 0.92736 0.90695 0.77314 0.88369 0.95577 0.97404 0.92681 0.89792 1.02507 0.97848 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.85 71.98 0.64 -1.32 16 2 C -0.09 -1.19 2.25 -10.80 -0.02 -1.21 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.32 5.20 30.59 0.16 -1.16 16 5 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 6 C -0.12 -1.50 5.92 30.60 0.18 -1.32 16 7 C -0.12 -1.77 4.96 30.61 0.15 -1.62 16 8 C -0.07 -1.05 1.72 -10.78 -0.02 -1.06 16 9 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 10 C -0.11 -1.97 4.73 30.59 0.14 -1.83 16 11 C 0.06 1.24 5.44 86.31 0.47 1.71 16 12 N -0.70 -17.69 6.50 -513.89 -3.34 -21.03 16 13 C 0.04 1.13 5.36 86.30 0.46 1.59 16 14 C 0.12 4.16 3.23 30.59 0.10 4.26 16 15 H 0.06 2.73 6.55 -2.39 -0.02 2.72 16 16 O -0.56 -18.41 12.75 -148.98 -1.90 -20.31 16 17 C 0.03 0.92 4.63 86.30 0.40 1.32 16 18 N -0.54 -23.91 4.60 -927.06 -4.27 -28.18 16 19 C 0.04 1.59 9.32 127.69 1.19 2.78 16 20 C 0.21 11.68 4.57 85.55 0.39 12.07 16 21 C -0.52 -31.00 8.53 25.60 0.22 -30.79 16 22 H 0.06 3.56 7.10 -2.91 -0.02 3.54 16 23 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 24 N -0.94 -58.39 13.29 21.45 0.28 -58.10 16 25 Si 0.97 45.88 29.54 68.60 2.03 47.91 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H 0.05 0.79 6.32 -2.39 -0.02 0.77 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.95 6.57 -2.39 -0.02 0.94 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.18 6.17 -2.39 -0.01 1.17 16 42 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 1.38 6.57 -2.39 -0.02 1.37 16 44 H 0.35 8.64 8.29 -89.69 -0.74 7.90 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.38 8.74 9.05 -74.06 -0.67 8.07 16 48 H 0.10 2.61 7.88 -2.39 -0.02 2.59 16 49 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 50 H 0.01 0.29 8.13 -2.39 -0.02 0.27 16 51 H 0.05 2.30 6.90 -2.39 -0.02 2.28 16 52 H 0.08 2.52 7.97 -2.38 -0.02 2.50 16 53 H -0.04 -2.57 8.11 -2.39 -0.02 -2.59 16 54 H 0.00 0.21 6.38 -2.39 -0.02 0.20 16 55 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.19 414.57 -2.67 -71.86 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.58 Total: 25.36 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.10 Total: -17.51 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -7.32 Total: -107.31 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -1.90 Total: -20.31 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -69.19 -2.67 -71.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591739147.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.175 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds