Wall clock time and date at job start Tue Mar 31 2020 10:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 C 1.53003 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46971 * 55.00017 * 4 3 2 6 6 N 1.46892 * 109.47319 * 294.99813 * 4 3 2 7 7 C 1.46897 * 111.00304 * 154.19744 * 6 4 3 8 8 C 1.52998 * 109.47343 * 185.13334 * 7 6 4 9 9 H 1.08997 * 109.46864 * 60.00492 * 8 7 6 10 10 O 1.42900 * 109.46934 * 299.99988 * 8 7 6 11 11 C 1.53002 * 109.47026 * 180.02562 * 8 7 6 12 12 N 1.46902 * 109.47122 * 185.00059 * 11 8 7 13 13 C 1.46908 * 110.99902 * 66.04285 * 12 11 8 14 14 C 1.46897 * 110.99965 * 189.99528 * 12 11 8 15 15 C 1.50702 * 109.46959 * 169.99813 * 14 12 11 16 16 H 1.08002 * 119.99965 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00101 * 179.97438 * 15 14 12 18 18 N 1.31513 * 120.00070 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99881 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47571 * 89.99773 * 19 17 15 21 21 H 1.48498 * 109.47085 * 209.99762 * 19 17 15 22 22 H 1.48503 * 109.46986 * 329.99700 * 19 17 15 23 23 C 1.52999 * 109.47004 * 174.99704 * 4 3 2 24 24 C 1.54266 * 110.03359 * 56.82892 * 23 4 3 25 25 C 1.54890 * 104.19465 * 217.10117 * 24 23 4 26 26 C 1.54887 * 102.74726 * 37.94307 * 25 24 23 27 27 C 1.53870 * 110.03562 * 299.65950 * 23 4 3 28 28 H 1.09006 * 109.47009 * 60.00066 * 1 2 3 29 29 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47405 * 300.00398 * 1 2 3 31 31 H 1.08999 * 109.47638 * 240.00350 * 2 1 3 32 32 H 1.08997 * 109.47417 * 119.99505 * 2 1 3 33 33 H 1.09006 * 109.47222 * 299.99804 * 3 2 1 34 34 H 1.08998 * 109.47404 * 59.99601 * 3 2 1 35 35 H 1.00899 * 111.00082 * 278.15740 * 6 4 3 36 36 H 1.08998 * 109.47238 * 305.13851 * 7 6 4 37 37 H 1.09010 * 109.46753 * 65.13078 * 7 6 4 38 38 H 0.96694 * 114.00733 * 299.99894 * 10 8 7 39 39 H 1.09005 * 109.47121 * 304.99715 * 11 8 7 40 40 H 1.09000 * 109.47694 * 64.99638 * 11 8 7 41 41 H 1.08996 * 109.47270 * 60.00317 * 13 12 11 42 42 H 1.09000 * 109.46603 * 180.02562 * 13 12 11 43 43 H 1.08992 * 109.46929 * 299.99867 * 13 12 11 44 44 H 1.08993 * 109.47111 * 289.99883 * 14 12 11 45 45 H 1.09004 * 109.47247 * 50.00066 * 14 12 11 46 46 H 0.97004 * 119.99976 * 179.97438 * 18 17 15 47 47 H 1.09007 * 110.01607 * 178.26549 * 23 4 3 48 48 H 1.08998 * 110.48431 * 335.77918 * 24 23 4 49 49 H 1.09000 * 110.48987 * 98.42382 * 24 23 4 50 50 H 1.08991 * 110.75669 * 279.62530 * 25 24 23 51 51 H 1.09004 * 110.75557 * 156.25564 * 25 24 23 52 52 H 1.09003 * 110.48255 * 203.37770 * 26 25 24 53 53 H 1.09003 * 110.59752 * 80.79007 * 26 25 24 54 54 H 1.09004 * 110.03712 * 238.57261 * 27 23 4 55 55 H 1.08999 * 110.03202 * 359.95266 * 27 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9337 0.8530 -0.8410 6 7 4.0591 0.8576 1.2561 7 6 5.3988 0.2808 1.0814 8 6 5.8205 -0.4290 2.3694 9 1 5.1096 -1.2236 2.5958 10 8 5.8432 0.5108 3.4456 11 6 7.2161 -1.0292 2.1876 12 7 7.5718 -1.8114 3.3790 13 6 6.7011 -2.9866 3.5165 14 6 8.9866 -2.2053 3.3471 15 6 9.3766 -2.7862 4.6819 16 1 8.6463 -2.8561 5.4745 17 6 10.6653 -3.2293 4.8909 18 7 11.0058 -3.7358 6.0559 19 14 11.9282 -3.1090 3.5197 20 1 12.6285 -1.8023 3.6049 21 1 12.9155 -4.2096 3.6582 22 1 11.2446 -3.2196 2.2061 23 6 4.0799 2.8796 -0.1252 24 6 3.5079 3.7452 1.0165 25 6 3.2392 5.1190 0.3535 26 6 2.7243 4.7248 -1.0531 27 6 3.5817 3.5025 -1.4410 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 4.0533 1.5399 1.9994 36 1 5.3815 -0.4360 0.2604 37 1 6.1098 1.0755 0.8549 38 1 6.4556 1.2471 3.3121 39 1 7.2211 -1.6784 1.3119 40 1 7.9414 -0.2273 2.0495 41 1 6.8066 -3.6219 2.6372 42 1 6.9858 -3.5475 4.4067 43 1 5.6646 -2.6621 3.6081 44 1 9.1383 -2.9519 2.5676 45 1 9.6026 -1.3308 3.1375 46 1 11.9124 -4.0479 6.2028 47 1 5.1694 2.8929 -0.0947 48 1 2.5797 3.3152 1.3929 49 1 4.2365 3.8458 1.8209 50 1 4.1591 5.6988 0.2796 51 1 2.4767 5.6708 0.9034 52 1 2.8811 5.5404 -1.7591 53 1 1.6693 4.4536 -1.0131 54 1 4.4293 3.8188 -2.0489 55 1 2.9773 2.7808 -1.9904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591770708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:33 Heat of formation + Delta-G solvation = -95.314384 kcal Electronic energy + Delta-G solvation = -27255.052953 eV Core-core repulsion = 23710.698980 eV Total energy + Delta-G solvation = -3544.353973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.53286 -39.34823 -37.33841 -36.31974 -34.60734 -34.59699 -31.84522 -30.48562 -29.64160 -29.09925 -28.00997 -27.10819 -24.86198 -23.41838 -22.63017 -22.14836 -21.74686 -21.24101 -19.82848 -19.03653 -17.46569 -17.20259 -16.93591 -16.60157 -16.34409 -16.16290 -16.01892 -15.58725 -15.48064 -15.08435 -14.58156 -14.41145 -14.33776 -14.20710 -14.12863 -13.75322 -13.57594 -13.34973 -13.08314 -12.81334 -12.61500 -12.51149 -12.40720 -12.33443 -12.16218 -12.03412 -11.92075 -11.90085 -11.89776 -11.77751 -11.62500 -11.51540 -11.49123 -11.43338 -11.19692 -11.07278 -10.78960 -10.66810 -9.16649 -8.96779 -8.28399 -6.32094 1.33594 1.35567 1.46113 2.33795 2.93268 3.04576 3.41718 3.64477 3.70573 3.79397 3.81681 4.05049 4.09814 4.16175 4.26585 4.29189 4.31877 4.43215 4.49785 4.52806 4.55040 4.60176 4.64420 4.66334 4.72568 4.75271 4.81784 4.82236 4.85535 4.89393 4.90801 5.00445 5.01672 5.08230 5.10389 5.13148 5.15132 5.21164 5.27969 5.28748 5.33096 5.36692 5.48940 5.51792 5.52374 5.58601 5.65928 5.98265 6.18681 6.35148 6.55602 6.66618 6.74533 6.98724 7.31359 8.88501 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.002526 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.579718 B =11082.721455 C =11825.454692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.101 4.101 4 C 0.097 3.903 5 H 0.070 0.930 6 N -0.680 5.680 7 C 0.041 3.959 8 C 0.127 3.873 9 H 0.090 0.910 10 O -0.562 6.562 11 C 0.022 3.978 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.172 3.828 15 C -0.517 4.517 16 H 0.035 0.965 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.951 3.049 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.251 1.251 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.347 0.653 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.377 0.623 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.020 0.980 42 H 0.045 0.955 43 H 0.074 0.926 44 H -0.013 1.013 45 H 0.029 0.971 46 H 0.267 0.733 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.068 0.932 52 H 0.066 0.934 53 H 0.068 0.932 54 H 0.059 0.941 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.446 16.925 -19.916 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.138 4.138 4 C -0.012 4.012 5 H 0.088 0.912 6 N -0.312 5.312 7 C -0.089 4.089 8 C 0.067 3.933 9 H 0.108 0.892 10 O -0.367 6.367 11 C -0.107 4.107 12 N -0.264 5.264 13 C -0.107 4.107 14 C 0.045 3.955 15 C -0.555 4.555 16 H 0.053 0.947 17 C -0.192 4.192 18 N -0.590 5.590 19 Si 0.774 3.226 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.175 1.175 23 C -0.137 4.137 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.159 4.159 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.225 0.775 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.004 0.996 45 H 0.047 0.953 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.085 0.915 53 H 0.087 0.913 54 H 0.078 0.922 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.145 16.122 -19.252 32.193 hybrid contribution 2.093 0.214 -0.861 2.274 sum -18.051 16.336 -20.113 31.579 Atomic orbital electron populations 1.21771 0.95950 1.01416 1.01665 1.21393 0.95342 0.97105 1.01565 1.21627 0.93566 0.96635 1.01995 1.21678 0.95676 0.92267 0.91623 0.91157 1.60434 1.23741 1.39514 1.07479 1.22478 0.90377 0.98648 0.97411 1.21810 0.94087 0.91057 0.86314 0.89246 1.86598 1.66295 1.38841 1.44962 1.22897 0.98460 0.98069 0.91226 1.61742 1.03689 1.22308 1.38630 1.22197 0.96884 0.91743 0.99886 1.19950 0.86648 0.94220 0.94709 1.21277 0.96387 1.39535 0.98326 0.94712 1.25897 1.00641 0.94413 0.98249 1.70061 1.20166 1.43551 1.25223 0.85666 0.78508 0.78512 0.79921 1.18838 1.20734 1.17495 1.22406 0.99489 0.95846 0.95981 1.22515 1.01139 0.95544 0.97098 1.22470 1.00852 0.96620 0.96174 1.22343 0.99613 0.97410 0.96538 1.22184 0.99494 0.97502 0.96386 0.92413 0.93136 0.93029 0.93008 0.92451 0.90884 0.91954 0.83360 0.90142 0.94235 0.77495 0.94173 0.90532 0.96132 0.93629 0.90753 0.99585 0.95315 0.92422 0.92243 0.90682 0.92406 0.91975 0.91290 0.91491 0.91292 0.92246 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -1.84 5.82 30.59 0.18 -1.66 16 3 C -0.10 -1.39 4.30 30.60 0.13 -1.26 16 4 C 0.10 1.44 1.73 44.92 0.08 1.51 16 5 H 0.07 1.11 7.70 -2.39 -0.02 1.09 16 6 N -0.68 -12.35 5.67 -491.58 -2.79 -15.14 16 7 C 0.04 0.80 5.21 86.30 0.45 1.25 16 8 C 0.13 3.30 3.20 30.59 0.10 3.40 16 9 H 0.09 2.61 6.34 -2.39 -0.02 2.59 16 10 O -0.56 -15.90 12.72 -148.98 -1.90 -17.79 16 11 C 0.02 0.69 4.59 86.30 0.40 1.09 16 12 N -0.54 -22.61 4.70 -927.04 -4.36 -26.97 16 13 C 0.04 1.64 9.14 127.69 1.17 2.80 16 14 C 0.17 8.34 3.79 85.56 0.32 8.67 16 15 C -0.52 -30.63 9.01 25.60 0.23 -30.39 16 16 H 0.03 2.32 7.37 -2.91 -0.02 2.30 16 17 C 0.01 0.30 5.47 84.66 0.46 0.76 16 18 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 19 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 23 C -0.12 -1.56 2.85 -10.07 -0.03 -1.59 16 24 C -0.13 -1.67 5.00 31.67 0.16 -1.51 16 25 C -0.12 -1.46 6.91 31.88 0.22 -1.24 16 26 C -0.12 -1.29 6.83 31.67 0.22 -1.08 16 27 C -0.12 -1.36 5.85 31.32 0.18 -1.18 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.14 7.75 -2.39 -0.02 1.12 16 33 H 0.07 0.87 6.37 -2.38 -0.02 0.86 16 34 H 0.06 0.93 6.15 -2.39 -0.01 0.91 16 35 H 0.35 6.58 6.91 -89.69 -0.62 5.96 16 36 H 0.08 1.52 7.93 -2.39 -0.02 1.50 16 37 H 0.04 0.70 7.61 -2.38 -0.02 0.68 16 38 H 0.38 8.35 9.04 -74.06 -0.67 7.68 16 39 H 0.04 1.17 8.12 -2.38 -0.02 1.15 16 40 H 0.08 2.23 7.93 -2.39 -0.02 2.21 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.04 2.10 6.76 -2.39 -0.02 2.08 16 43 H 0.07 2.58 6.37 -2.39 -0.02 2.56 16 44 H -0.01 -0.65 7.18 -2.39 -0.02 -0.67 16 45 H 0.03 1.35 7.36 -2.38 -0.02 1.34 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.06 0.91 7.60 -2.38 -0.02 0.89 16 48 H 0.07 1.04 5.62 -2.39 -0.01 1.02 16 49 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 53 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 55 H 0.07 0.78 6.38 -2.39 -0.02 0.77 16 Total: -1.00 -67.68 409.23 -2.38 -70.06 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.50 Total: 25.48 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.98 Total: -21.81 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -6.85 Total: -102.14 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.90 Total: -17.79 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -67.68 -2.38 -70.06 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591770708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.255 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds