Wall clock time and date at job start Tue Mar 31 2020 10:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47050 * 2 1 4 4 C 1.46900 * 110.99704 * 294.46465 * 3 2 1 5 5 C 1.53001 * 109.47345 * 285.04857 * 4 3 2 6 6 C 1.46897 * 110.99651 * 58.41541 * 3 2 1 7 7 C 1.52999 * 109.46965 * 66.05260 * 6 3 2 8 8 O 1.42896 * 109.47516 * 64.99684 * 7 6 3 9 9 C 1.42900 * 114.00090 * 180.02562 * 8 7 6 10 10 H 1.09002 * 110.27230 * 27.90716 * 9 8 7 11 11 C 1.54599 * 110.30955 * 265.71283 * 9 8 7 12 12 C 1.54929 * 102.92071 * 219.12614 * 11 9 8 13 13 N 1.48530 * 103.22938 * 37.41771 * 12 11 9 14 14 C 1.46906 * 111.00081 * 200.28044 * 13 12 11 15 15 C 1.52997 * 109.46605 * 287.39357 * 14 13 12 16 16 H 1.09002 * 109.47726 * 55.00180 * 15 14 13 17 17 C 1.52998 * 109.47350 * 294.99630 * 15 14 13 18 18 C 1.52999 * 109.47145 * 174.99953 * 15 14 13 19 19 C 1.50695 * 109.47383 * 184.99852 * 18 15 14 20 20 H 1.07997 * 120.00310 * 0.02562 * 19 18 15 21 21 C 1.37884 * 120.00126 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99861 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46972 * 60.00531 * 23 21 19 25 25 H 1.48502 * 109.47332 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47674 * 300.00742 * 23 21 19 27 27 C 1.47904 * 105.81747 * 320.78495 * 13 12 11 28 28 H 1.08994 * 109.47792 * 54.34579 * 1 2 3 29 29 H 1.08997 * 109.46803 * 174.34941 * 1 2 3 30 30 H 1.09006 * 109.47079 * 294.34287 * 1 2 3 31 31 H 1.09000 * 109.46795 * 240.00661 * 2 1 3 32 32 H 1.08998 * 109.47485 * 119.99743 * 2 1 3 33 33 H 1.09001 * 109.47528 * 45.05382 * 4 3 2 34 34 H 1.09004 * 109.47185 * 165.04703 * 4 3 2 35 35 H 1.08998 * 109.47188 * 63.93924 * 5 4 3 36 36 H 1.08999 * 109.47175 * 183.94179 * 5 4 3 37 37 H 1.08997 * 109.46825 * 303.94208 * 5 4 3 38 38 H 1.08998 * 109.46764 * 186.04335 * 6 3 2 39 39 H 1.08999 * 109.47746 * 306.04819 * 6 3 2 40 40 H 1.08999 * 109.47066 * 185.00110 * 7 6 3 41 41 H 1.08999 * 109.46873 * 304.99036 * 7 6 3 42 42 H 1.08997 * 110.72176 * 337.49034 * 11 9 8 43 43 H 1.09001 * 110.71999 * 100.76829 * 11 9 8 44 44 H 1.08997 * 110.67075 * 278.97423 * 12 11 9 45 45 H 1.09009 * 110.80837 * 155.91618 * 12 11 9 46 46 H 1.08999 * 109.47006 * 47.38681 * 14 13 12 47 47 H 1.08993 * 109.47404 * 167.39571 * 14 13 12 48 48 H 1.08995 * 109.47497 * 300.00666 * 17 15 14 49 49 H 1.09004 * 109.47024 * 60.00165 * 17 15 14 50 50 H 1.08999 * 109.47256 * 179.97438 * 17 15 14 51 51 H 1.09001 * 109.47274 * 305.00154 * 18 15 14 52 52 H 1.08995 * 109.47289 * 64.99667 * 18 15 14 53 53 H 0.97000 * 119.99565 * 179.97438 * 22 21 19 54 54 H 1.08997 * 109.92217 * 265.98226 * 27 13 12 55 55 H 1.09007 * 109.91140 * 144.68211 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6596 2.0707 -1.2483 5 6 2.5611 1.5749 -2.3808 6 6 1.5179 2.1207 1.1683 7 6 2.1167 1.5231 2.4431 8 8 3.5309 1.7275 2.4464 9 6 4.1913 1.2032 3.6001 10 1 3.6338 0.3574 4.0026 11 6 4.3503 2.3039 4.6740 12 6 5.7616 2.0254 5.2493 13 7 6.5409 1.6140 4.0536 14 6 7.7414 0.8612 4.4411 15 6 8.7670 1.8170 5.0539 16 1 8.3090 2.3602 5.8805 17 6 9.2381 2.8102 3.9897 18 6 9.9645 1.0172 5.5706 19 6 10.9171 1.9426 6.2827 20 1 10.6909 2.9958 6.3595 21 6 12.0771 1.4445 6.8372 22 7 12.3524 0.1618 6.7442 23 14 13.2583 2.5917 7.7193 24 1 12.5622 3.2357 8.8621 25 1 14.4200 1.8152 8.2220 26 1 13.7314 3.6362 6.7758 27 6 5.6280 0.7764 3.2459 28 1 -0.3634 0.5990 -0.8349 29 1 -0.3633 -1.0227 -0.1012 30 1 -0.3633 0.4236 0.9364 31 1 1.8932 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 0.6189 1.8578 -1.4927 34 1 1.7909 3.1455 -1.1234 35 1 2.3788 0.5141 -2.5525 36 1 2.3416 2.1333 -3.2908 37 1 3.6052 1.7243 -2.1058 38 1 1.8057 3.1690 1.0886 39 1 0.4312 2.0442 1.2067 40 1 1.6772 2.0097 3.3137 41 1 1.9039 0.4546 2.4781 42 1 4.3070 3.2942 4.2206 43 1 3.5905 2.1996 5.4485 44 1 5.7263 1.2190 5.9817 45 1 6.1841 2.9274 5.6922 46 1 7.4722 0.0995 5.1728 47 1 8.1708 0.3835 3.5605 48 1 9.6961 2.2671 3.1631 49 1 8.3849 3.3801 3.6215 50 1 9.9683 3.4914 4.4263 51 1 9.6176 0.2499 6.2628 52 1 10.4756 0.5452 4.7315 53 1 13.1687 -0.1885 7.1340 54 1 5.7741 -0.2754 3.4914 55 1 5.8135 0.9421 2.1846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602480743.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:19 Heat of formation + Delta-G solvation = -69.944455 kcal Electronic energy + Delta-G solvation = -26755.201811 eV Core-core repulsion = 23211.947960 eV Total energy + Delta-G solvation = -3543.253851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.50007 -39.51918 -38.02408 -36.44437 -34.32811 -32.65619 -31.86921 -31.20183 -29.53461 -28.71818 -28.03357 -26.69484 -25.12300 -24.69045 -23.14268 -22.33688 -21.72668 -20.64518 -20.43790 -18.51311 -18.03009 -17.36548 -16.94447 -16.78792 -16.49920 -16.04784 -15.73204 -15.33688 -15.23955 -14.92070 -14.60003 -14.48604 -14.37505 -14.02161 -13.80529 -13.61525 -13.38262 -13.23128 -13.10017 -12.99910 -12.89502 -12.76525 -12.72948 -12.53657 -12.38242 -12.28381 -12.20392 -12.16586 -12.04986 -11.93087 -11.74410 -11.57953 -11.38769 -11.31047 -11.06752 -10.90497 -10.51782 -10.35163 -9.30402 -9.08674 -8.16225 -6.25243 1.40555 1.43663 1.51268 2.42884 2.72963 3.01886 3.08658 3.16788 3.66462 3.75661 3.99415 4.03477 4.11319 4.17944 4.23416 4.28493 4.32870 4.35507 4.39471 4.42531 4.48826 4.54364 4.56447 4.60788 4.65044 4.70731 4.73981 4.79081 4.83952 4.87061 4.91690 4.94773 4.99022 5.03056 5.07430 5.08007 5.13046 5.15211 5.21729 5.28229 5.28676 5.46344 5.47080 5.50276 5.56785 5.79794 5.89534 6.03695 6.08534 6.19301 6.24552 6.32988 6.48948 6.90057 7.42551 8.95638 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.027579 B = 0.002060 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.020481 B =13588.310355 C =13881.948986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 N -0.546 5.546 4 C 0.046 3.954 5 C -0.143 4.143 6 C 0.055 3.945 7 C 0.062 3.938 8 O -0.376 6.376 9 C 0.087 3.913 10 H 0.080 0.920 11 C -0.133 4.133 12 C 0.033 3.967 13 N -0.518 5.518 14 C 0.065 3.935 15 C -0.068 4.068 16 H 0.052 0.948 17 C -0.112 4.112 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.060 0.940 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.268 1.268 27 C 0.038 3.962 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.026 0.974 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.038 0.962 51 H -0.014 1.014 52 H -0.011 1.011 53 H 0.262 0.738 54 H 0.052 0.948 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.993 1.865 -12.979 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.082 4.082 3 N -0.270 5.270 4 C -0.081 4.081 5 C -0.201 4.201 6 C -0.073 4.073 7 C -0.015 4.015 8 O -0.294 6.294 9 C 0.029 3.971 10 H 0.097 0.903 11 C -0.171 4.171 12 C -0.095 4.095 13 N -0.243 5.243 14 C -0.064 4.064 15 C -0.087 4.087 16 H 0.071 0.929 17 C -0.170 4.170 18 C -0.004 4.004 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.193 1.193 27 C -0.090 4.090 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.053 0.947 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.005 0.995 52 H 0.008 0.992 53 H 0.070 0.930 54 H 0.070 0.930 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.072 2.273 -13.367 31.175 hybrid contribution -0.032 -0.746 1.152 1.373 sum -28.104 1.526 -12.215 30.682 Atomic orbital electron populations 1.22376 0.97268 1.02920 1.02083 1.22197 0.93481 0.89985 1.02584 1.62177 1.60050 1.02538 1.02218 1.22153 0.97950 0.98421 0.89623 1.21725 0.99805 1.01130 0.97437 1.22184 0.97527 0.98305 0.89244 1.22697 0.81348 0.99850 0.97569 1.88073 1.19988 1.79813 1.41563 1.22856 0.92449 0.95544 0.86276 0.90256 1.22956 0.95890 1.00080 0.98148 1.23230 0.93524 1.00584 0.92149 1.64720 1.04954 1.37295 1.17316 1.22216 0.91084 0.94516 0.98536 1.20946 0.94459 0.96172 0.97082 0.92914 1.21466 0.99837 0.98373 0.97282 1.19010 0.92781 0.94504 0.94137 1.21591 1.05314 0.95109 1.34613 0.92185 1.25971 1.00088 0.96649 0.97383 1.70099 1.26335 1.14251 1.46896 0.85548 0.78052 0.78714 0.79026 1.19206 1.20979 1.19300 1.22882 0.91231 0.95298 0.99571 0.92244 0.91369 0.92182 0.90883 0.91193 0.93368 0.91238 0.92867 0.91347 0.93433 0.90716 0.91401 0.91908 0.92862 0.90424 0.88929 0.93767 0.90455 0.95540 0.91818 0.94657 0.91939 0.94266 0.99549 0.99234 0.92951 0.93012 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 9.20 71.98 0.66 -1.18 16 2 C 0.05 0.62 5.70 86.30 0.49 1.11 16 3 N -0.55 -8.86 4.59 -896.22 -4.12 -12.97 16 4 C 0.05 0.63 5.60 86.30 0.48 1.12 16 5 C -0.14 -2.00 9.95 71.98 0.72 -1.29 16 6 C 0.06 0.79 5.05 86.30 0.44 1.23 16 7 C 0.06 0.97 5.83 71.98 0.42 1.39 16 8 O -0.38 -8.48 9.88 -148.98 -1.47 -9.95 16 9 C 0.09 1.89 3.48 31.47 0.11 2.00 16 10 H 0.08 1.42 7.81 -2.39 -0.02 1.41 16 11 C -0.13 -2.81 6.80 31.80 0.22 -2.60 16 12 C 0.03 0.89 5.91 86.65 0.51 1.40 16 13 N -0.52 -16.21 4.70 -883.02 -4.15 -20.35 16 14 C 0.06 2.37 4.09 86.30 0.35 2.73 16 15 C -0.07 -2.91 2.37 -10.80 -0.03 -2.94 16 16 H 0.05 2.28 7.17 -2.39 -0.02 2.26 16 17 C -0.11 -4.59 8.89 71.98 0.64 -3.95 16 18 C 0.03 1.80 4.45 29.85 0.13 1.93 16 19 C -0.53 -30.55 8.41 25.60 0.22 -30.33 16 20 H 0.06 3.35 7.06 -2.91 -0.02 3.32 16 21 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 22 N -0.94 -58.03 13.29 21.45 0.28 -57.75 16 23 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.04 1.02 6.48 86.45 0.56 1.58 16 28 H 0.06 0.58 6.07 -2.39 -0.01 0.56 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.55 6.57 -2.38 -0.02 0.54 16 31 H 0.07 1.02 6.75 -2.39 -0.02 1.00 16 32 H 0.07 1.03 6.44 -2.39 -0.02 1.01 16 33 H 0.05 0.55 5.85 -2.39 -0.01 0.54 16 34 H 0.07 0.97 7.75 -2.38 -0.02 0.95 16 35 H 0.05 0.71 6.94 -2.39 -0.02 0.70 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.18 7.83 -2.39 -0.02 1.16 16 39 H 0.07 0.72 6.08 -2.39 -0.01 0.71 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.76 6.33 -2.39 -0.02 0.75 16 42 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.04 1.19 7.81 -2.39 -0.02 1.18 16 45 H 0.08 2.21 7.67 -2.38 -0.02 2.19 16 46 H 0.03 0.98 7.83 -2.39 -0.02 0.96 16 47 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 48 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 2.30 7.75 -2.38 -0.02 2.28 16 50 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 51 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 52 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 53 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 54 H 0.05 1.34 7.77 -2.39 -0.02 1.32 16 55 H 0.08 2.30 7.96 -2.38 -0.02 2.28 16 Total: -1.00 -66.47 412.99 -0.23 -66.70 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.81 Total: 14.62 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 6.38 Total: -27.56 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -7.98 Total: -91.07 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -1.47 Total: -9.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.47 -0.23 -66.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602480743.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.244 kcal (2) G-P(sol) polarization free energy of solvation -66.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds