Wall clock time and date at job start Tue Mar 31 2020 10:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00437 * 2 1 4 4 H 1.08995 * 109.46938 * 334.55393 * 3 2 1 5 5 C 1.53001 * 109.47123 * 94.55276 * 3 2 1 6 6 N 1.46897 * 109.47108 * 299.99884 * 5 3 2 7 7 C 1.46902 * 110.99749 * 180.02562 * 6 5 3 8 8 C 1.53041 * 109.46003 * 275.07019 * 7 6 5 9 9 C 1.53191 * 109.31403 * 178.61796 * 8 7 6 10 10 N 1.46926 * 108.77818 * 54.63212 * 9 8 7 11 11 C 1.36936 * 120.63497 * 126.41413 * 10 9 8 12 12 H 1.08003 * 119.99628 * 326.75174 * 11 10 9 13 13 C 1.38812 * 120.00429 * 146.74792 * 11 10 9 14 14 N 1.31623 * 119.99540 * 343.91917 * 13 11 10 15 15 Si 1.86800 * 119.99971 * 163.91662 * 13 11 10 16 16 H 1.48504 * 109.46908 * 90.00473 * 15 13 11 17 17 H 1.48495 * 109.46987 * 210.00177 * 15 13 11 18 18 H 1.48495 * 109.47467 * 330.00447 * 15 13 11 19 19 C 1.46936 * 118.73831 * 306.39797 * 10 9 8 20 20 C 1.53044 * 109.45780 * 155.00506 * 7 6 5 21 21 C 1.52999 * 109.47214 * 214.55334 * 3 2 1 22 22 C 1.53173 * 109.54614 * 173.94642 * 21 3 2 23 23 C 1.53101 * 109.16030 * 183.24278 * 22 21 3 24 24 O 1.42903 * 109.48593 * 57.47301 * 23 22 21 25 25 C 1.42904 * 114.09923 * 298.89127 * 24 23 22 26 26 C 1.53087 * 109.41625 * 61.15486 * 25 24 23 27 27 H 1.08998 * 109.47187 * 61.80289 * 1 2 3 28 28 H 1.08998 * 109.47516 * 181.80366 * 1 2 3 29 29 H 1.09004 * 109.47237 * 301.80739 * 1 2 3 30 30 H 1.09002 * 109.46632 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47117 * 60.00227 * 5 3 2 32 32 H 1.00900 * 111.00054 * 303.95643 * 6 5 3 33 33 H 1.08996 * 109.45129 * 35.03802 * 7 6 5 34 34 H 1.09007 * 109.49767 * 298.56660 * 8 7 6 35 35 H 1.09000 * 109.50102 * 58.66213 * 8 7 6 36 36 H 1.09003 * 109.58503 * 294.84856 * 9 8 7 37 37 H 1.08998 * 109.70783 * 174.49380 * 9 8 7 38 38 H 0.97007 * 119.99138 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58313 * 293.81459 * 19 10 9 40 40 H 1.09001 * 109.70189 * 173.46315 * 19 10 9 41 41 H 1.08999 * 109.49476 * 301.33483 * 20 7 6 42 42 H 1.08992 * 109.50016 * 61.43080 * 20 7 6 43 43 H 1.08995 * 109.54501 * 294.12353 * 21 3 2 44 44 H 1.09003 * 109.52455 * 303.06002 * 22 21 3 45 45 H 1.08999 * 109.52532 * 63.24337 * 22 21 3 46 46 H 1.08996 * 109.40647 * 297.49168 * 23 22 21 47 47 H 1.09006 * 109.49511 * 177.51105 * 23 22 21 48 48 H 1.09002 * 109.47475 * 301.17153 * 25 24 23 49 49 H 1.09000 * 109.47986 * 181.14556 * 25 24 23 50 50 H 1.08995 * 109.52371 * 182.48366 * 26 25 24 51 51 H 1.09008 * 109.56776 * 62.33124 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3104 2.0147 -0.4415 5 6 2.3224 1.7247 1.4380 6 7 1.0811 1.7414 2.2234 7 6 1.3427 2.1412 3.6126 8 6 1.7650 0.9149 4.4251 9 6 2.0702 1.3414 5.8645 10 7 0.9026 2.0507 6.4052 11 6 0.3326 1.6572 7.5865 12 1 0.3262 0.6128 7.8615 13 6 -0.2369 2.6006 8.4306 14 7 0.0376 3.8779 8.2704 15 14 -1.3929 2.0574 9.7937 16 1 -0.6115 1.7892 11.0278 17 1 -2.3842 3.1307 10.0590 18 1 -2.1017 0.8205 9.3781 19 6 0.3584 3.1906 5.6546 20 6 0.0724 2.7433 4.2176 21 6 3.3030 1.2880 -0.8181 22 6 3.8477 2.7139 -0.9462 23 6 5.0954 2.6974 -1.8332 24 8 4.7667 2.1416 -3.1080 25 6 4.2977 0.7928 -3.0531 26 6 3.0168 0.7330 -2.2169 27 1 -0.3633 0.4856 -0.9057 28 1 -0.3634 -1.0271 0.0323 29 1 -0.3634 0.5417 0.8734 30 1 2.7662 2.7203 1.4378 31 1 3.0223 1.0153 1.8795 32 1 0.3920 2.3432 1.7979 33 1 2.1413 2.8827 3.6327 34 1 0.9570 0.1832 4.4261 35 1 2.6563 0.4728 3.9799 36 1 2.9363 2.0032 5.8737 37 1 2.2768 0.4608 6.4728 38 1 -0.3607 4.5371 8.8601 39 1 1.0849 4.0031 5.6467 40 1 -0.5655 3.5310 6.1221 41 1 -0.2409 3.6026 3.6247 42 1 -0.7195 1.9945 4.2205 43 1 4.0411 0.6591 -0.3204 44 1 3.0898 3.3542 -1.3976 45 1 4.1064 3.0951 0.0417 46 1 5.8679 2.0909 -1.3605 47 1 5.4621 3.7156 -1.9642 48 1 5.0599 0.1614 -2.5964 49 1 4.0896 0.4389 -4.0628 50 1 2.6819 -0.3011 -2.1370 51 1 2.2408 1.3314 -2.6944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602540228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:16 Heat of formation + Delta-G solvation = -83.462366 kcal Electronic energy + Delta-G solvation = -27375.209085 eV Core-core repulsion = 23695.535959 eV Total energy + Delta-G solvation = -3679.673126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.02235 -38.45683 -37.56000 -34.98389 -34.29310 -32.17452 -31.38546 -30.31692 -29.60567 -28.26984 -26.15340 -25.09195 -24.09853 -23.55971 -22.30999 -21.44721 -21.12765 -20.34129 -19.04470 -16.82018 -16.75709 -16.65819 -16.24491 -15.63549 -15.17993 -15.00887 -14.81714 -14.70648 -14.41219 -13.94653 -13.81040 -13.65971 -13.48711 -13.19704 -12.86182 -12.61466 -12.54234 -12.31435 -11.94415 -11.81238 -11.63799 -11.46243 -11.34065 -11.05999 -10.90906 -10.76800 -10.71759 -10.69568 -10.56481 -10.33470 -10.19146 -9.95243 -9.89978 -9.68269 -9.47861 -9.28535 -8.46557 -8.13099 -6.58161 -5.78836 -3.25129 3.37398 3.44326 3.47480 3.56636 3.69997 4.10774 4.47976 4.50587 4.57851 4.69604 4.72463 4.91042 4.95827 5.06637 5.16437 5.23762 5.34514 5.37478 5.38265 5.42425 5.45168 5.48877 5.54100 5.56734 5.59315 5.68003 5.71822 5.77297 5.88736 5.89673 5.93640 5.96893 6.07089 6.18276 6.36416 6.47879 6.57651 6.63993 6.66649 6.86603 6.89952 7.07352 7.22173 7.32857 7.34975 7.56791 7.62032 7.82564 8.49658 9.23083 9.85401 10.46021 11.29839 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002544 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.221555 B =11002.221914 C =11413.891470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.373 6.373 3 C 0.102 3.898 4 H 0.056 0.944 5 C 0.038 3.962 6 N -0.683 5.683 7 C 0.098 3.902 8 C -0.114 4.114 9 C 0.145 3.855 10 N -0.590 5.590 11 C -0.255 4.255 12 H 0.062 0.938 13 C 0.006 3.994 14 N -0.902 5.902 15 Si 0.901 3.099 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.178 3.822 20 C -0.140 4.140 21 C -0.087 4.087 22 C -0.152 4.152 23 C 0.062 3.938 24 O -0.386 6.386 25 C 0.060 3.940 26 C -0.144 4.144 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.330 0.670 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.013 0.987 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.094 0.906 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -3.507 -22.179 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C 0.043 3.957 4 H 0.074 0.926 5 C -0.091 4.091 6 N -0.314 5.314 7 C -0.011 4.011 8 C -0.154 4.154 9 C 0.018 3.982 10 N -0.313 5.313 11 C -0.384 4.384 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.545 5.545 15 Si 0.730 3.270 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.204 1.204 19 C 0.052 3.948 20 C -0.180 4.180 21 C -0.106 4.106 22 C -0.190 4.190 23 C -0.014 4.014 24 O -0.305 6.305 25 C -0.017 4.017 26 C -0.182 4.182 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.112 0.888 48 H 0.068 0.932 49 H 0.110 0.890 50 H 0.101 0.899 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.170 -4.106 -22.091 23.301 hybrid contribution -0.707 0.896 0.960 1.491 sum 5.463 -3.210 -21.132 22.061 Atomic orbital electron populations 1.22832 0.80902 1.02502 1.00174 1.87829 1.19879 1.26542 1.94900 1.22079 0.94071 0.85523 0.94025 0.92624 1.22580 0.93531 0.99598 0.93422 1.60649 1.10018 1.57828 1.02864 1.21466 0.97337 0.96015 0.86288 1.21975 1.00044 0.96927 0.96487 1.20940 0.89908 0.95578 0.91782 1.43976 1.30041 1.34977 1.22297 1.19121 1.32307 0.91666 0.95356 0.92012 1.25173 1.01157 0.95584 0.97389 1.70040 1.44495 1.00184 1.39802 0.86333 0.80816 0.77756 0.82080 1.21319 1.21575 1.20385 1.20624 0.98829 0.88822 0.86560 1.22393 0.96583 0.99110 0.99913 1.21261 0.96925 0.96705 0.95702 1.22285 0.98943 0.96715 1.01066 1.22558 0.95515 0.99192 0.84180 1.87923 1.85352 1.28229 1.28974 1.22609 0.94846 0.83433 1.00791 1.22125 0.98317 1.02834 0.94938 0.95392 0.90402 0.91787 0.94746 0.90339 0.85243 0.94784 0.91841 0.93626 0.96912 0.92742 0.93674 0.96518 0.90355 0.93802 0.91849 0.90192 0.90953 0.90294 0.93075 0.88788 0.93159 0.88969 0.89889 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.64 101.05 1.08 1.42 16 2 O -0.37 -4.53 9.45 -35.23 -0.33 -4.86 16 3 C 0.10 1.07 2.02 -26.73 -0.05 1.01 16 4 H 0.06 0.56 7.76 -51.93 -0.40 0.16 16 5 C 0.04 0.46 4.95 -3.83 -0.02 0.44 16 6 N -0.68 -9.47 4.62 -106.68 -0.49 -9.96 16 7 C 0.10 1.65 2.46 -67.67 -0.17 1.48 16 8 C -0.11 -2.10 5.59 -26.61 -0.15 -2.25 16 9 C 0.14 3.13 6.52 -3.71 -0.02 3.11 16 10 N -0.59 -14.99 2.96 -172.31 -0.51 -15.50 16 11 C -0.25 -7.09 9.53 -15.06 -0.14 -7.23 16 12 H 0.06 1.70 7.88 -52.48 -0.41 1.29 16 13 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 14 N -0.90 -26.36 11.54 55.49 0.64 -25.72 16 15 Si 0.90 21.78 29.58 -169.99 -5.03 16.75 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.18 4.24 5.27 -3.71 -0.02 4.22 16 20 C -0.14 -2.64 5.36 -26.61 -0.14 -2.78 16 21 C -0.09 -0.79 2.04 -90.44 -0.18 -0.98 16 22 C -0.15 -1.25 5.12 -26.59 -0.14 -1.39 16 23 C 0.06 0.50 6.84 37.21 0.25 0.75 16 24 O -0.39 -3.79 10.77 -35.23 -0.38 -4.17 16 25 C 0.06 0.48 6.84 37.20 0.25 0.74 16 26 C -0.14 -1.23 5.16 -26.59 -0.14 -1.37 16 27 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.74 6.22 -51.93 -0.32 0.42 16 30 H 0.03 0.40 6.59 -51.93 -0.34 0.05 16 31 H 0.08 1.05 7.41 -51.93 -0.38 0.67 16 32 H 0.33 4.21 7.95 -39.29 -0.31 3.90 16 33 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 1.17 7.93 -51.93 -0.41 0.75 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 2.07 6.45 -51.93 -0.33 1.74 16 41 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.63 6.77 -51.93 -0.35 0.27 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.73 7.67 -51.93 -0.40 0.33 16 51 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -30.24 383.55 -9.52 -39.76 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.52 Total: 0.66 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 0.32 Total: -2.72 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.36 Total: -51.19 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.71 Total: -9.04 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.24 -9.52 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602540228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.705 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds