Wall clock time and date at job start Tue Mar 31 2020 10:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00437 * 2 1 4 4 H 1.08995 * 109.46938 * 334.55393 * 3 2 1 5 5 C 1.53001 * 109.47123 * 94.55276 * 3 2 1 6 6 N 1.46897 * 109.47108 * 299.99884 * 5 3 2 7 7 C 1.46902 * 110.99749 * 180.02562 * 6 5 3 8 8 C 1.53041 * 109.46003 * 275.07019 * 7 6 5 9 9 C 1.53191 * 109.31403 * 178.61796 * 8 7 6 10 10 N 1.46926 * 108.77818 * 54.63212 * 9 8 7 11 11 C 1.36936 * 120.63497 * 126.41413 * 10 9 8 12 12 H 1.08003 * 119.99628 * 326.75174 * 11 10 9 13 13 C 1.38812 * 120.00429 * 146.74792 * 11 10 9 14 14 N 1.31623 * 119.99540 * 343.91917 * 13 11 10 15 15 Si 1.86800 * 119.99971 * 163.91662 * 13 11 10 16 16 H 1.48504 * 109.46908 * 90.00473 * 15 13 11 17 17 H 1.48495 * 109.46987 * 210.00177 * 15 13 11 18 18 H 1.48495 * 109.47467 * 330.00447 * 15 13 11 19 19 C 1.46936 * 118.73831 * 306.39797 * 10 9 8 20 20 C 1.53044 * 109.45780 * 155.00506 * 7 6 5 21 21 C 1.52999 * 109.47214 * 214.55334 * 3 2 1 22 22 C 1.53173 * 109.54614 * 173.94642 * 21 3 2 23 23 C 1.53101 * 109.16030 * 183.24278 * 22 21 3 24 24 O 1.42903 * 109.48593 * 57.47301 * 23 22 21 25 25 C 1.42904 * 114.09923 * 298.89127 * 24 23 22 26 26 C 1.53087 * 109.41625 * 61.15486 * 25 24 23 27 27 H 1.08998 * 109.47187 * 61.80289 * 1 2 3 28 28 H 1.08998 * 109.47516 * 181.80366 * 1 2 3 29 29 H 1.09004 * 109.47237 * 301.80739 * 1 2 3 30 30 H 1.09002 * 109.46632 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47117 * 60.00227 * 5 3 2 32 32 H 1.00900 * 111.00054 * 303.95643 * 6 5 3 33 33 H 1.08996 * 109.45129 * 35.03802 * 7 6 5 34 34 H 1.09007 * 109.49767 * 298.56660 * 8 7 6 35 35 H 1.09000 * 109.50102 * 58.66213 * 8 7 6 36 36 H 1.09003 * 109.58503 * 294.84856 * 9 8 7 37 37 H 1.08998 * 109.70783 * 174.49380 * 9 8 7 38 38 H 0.97007 * 119.99138 * 179.97438 * 14 13 11 39 39 H 1.09001 * 109.58313 * 293.81459 * 19 10 9 40 40 H 1.09001 * 109.70189 * 173.46315 * 19 10 9 41 41 H 1.08999 * 109.49476 * 301.33483 * 20 7 6 42 42 H 1.08992 * 109.50016 * 61.43080 * 20 7 6 43 43 H 1.08995 * 109.54501 * 294.12353 * 21 3 2 44 44 H 1.09003 * 109.52455 * 303.06002 * 22 21 3 45 45 H 1.08999 * 109.52532 * 63.24337 * 22 21 3 46 46 H 1.08996 * 109.40647 * 297.49168 * 23 22 21 47 47 H 1.09006 * 109.49511 * 177.51105 * 23 22 21 48 48 H 1.09002 * 109.47475 * 301.17153 * 25 24 23 49 49 H 1.09000 * 109.47986 * 181.14556 * 25 24 23 50 50 H 1.08995 * 109.52371 * 182.48366 * 26 25 24 51 51 H 1.09008 * 109.56776 * 62.33124 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3104 2.0147 -0.4415 5 6 2.3224 1.7247 1.4380 6 7 1.0811 1.7414 2.2234 7 6 1.3427 2.1412 3.6126 8 6 1.7650 0.9149 4.4251 9 6 2.0702 1.3414 5.8645 10 7 0.9026 2.0507 6.4052 11 6 0.3326 1.6572 7.5865 12 1 0.3262 0.6128 7.8615 13 6 -0.2369 2.6006 8.4306 14 7 0.0376 3.8779 8.2704 15 14 -1.3929 2.0574 9.7937 16 1 -0.6115 1.7892 11.0278 17 1 -2.3842 3.1307 10.0590 18 1 -2.1017 0.8205 9.3781 19 6 0.3584 3.1906 5.6546 20 6 0.0724 2.7433 4.2176 21 6 3.3030 1.2880 -0.8181 22 6 3.8477 2.7139 -0.9462 23 6 5.0954 2.6974 -1.8332 24 8 4.7667 2.1416 -3.1080 25 6 4.2977 0.7928 -3.0531 26 6 3.0168 0.7330 -2.2169 27 1 -0.3633 0.4856 -0.9057 28 1 -0.3634 -1.0271 0.0323 29 1 -0.3634 0.5417 0.8734 30 1 2.7662 2.7203 1.4378 31 1 3.0223 1.0153 1.8795 32 1 0.3920 2.3432 1.7979 33 1 2.1413 2.8827 3.6327 34 1 0.9570 0.1832 4.4261 35 1 2.6563 0.4728 3.9799 36 1 2.9363 2.0032 5.8737 37 1 2.2768 0.4608 6.4728 38 1 -0.3607 4.5371 8.8601 39 1 1.0849 4.0031 5.6467 40 1 -0.5655 3.5310 6.1221 41 1 -0.2409 3.6026 3.6247 42 1 -0.7195 1.9945 4.2205 43 1 4.0411 0.6591 -0.3204 44 1 3.0898 3.3542 -1.3976 45 1 4.1064 3.0951 0.0417 46 1 5.8679 2.0909 -1.3605 47 1 5.4621 3.7156 -1.9642 48 1 5.0599 0.1614 -2.5964 49 1 4.0896 0.4389 -4.0628 50 1 2.6819 -0.3011 -2.1370 51 1 2.2408 1.3314 -2.6944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602540228.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:15 Heat of formation + Delta-G solvation = -102.496929 kcal Electronic energy + Delta-G solvation = -27376.034486 eV Core-core repulsion = 23695.535959 eV Total energy + Delta-G solvation = -3680.498527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.77490 -39.65895 -38.74722 -36.41871 -35.17536 -33.92199 -32.11866 -31.83174 -31.25441 -29.38899 -27.21583 -26.45256 -25.28306 -24.33617 -23.86849 -22.93204 -22.23344 -21.06600 -20.68687 -18.71521 -17.65047 -17.39761 -16.93608 -16.87279 -16.66888 -16.04017 -15.84076 -15.68145 -15.60582 -15.35678 -15.31510 -14.83907 -14.57767 -14.48862 -14.21470 -13.89099 -13.77399 -13.22220 -13.19550 -13.05194 -12.87868 -12.75904 -12.54886 -12.39657 -12.31672 -12.21875 -12.04834 -12.02101 -11.80784 -11.65898 -11.48075 -11.29997 -11.22576 -11.10487 -10.61270 -10.57131 -10.24320 -9.27363 -8.63557 -7.90222 -5.40420 1.45182 1.46465 1.56823 2.49649 2.85758 2.99642 3.06802 3.26611 3.67807 3.70978 3.88504 3.94191 3.98629 4.06277 4.09492 4.18342 4.25813 4.36741 4.42560 4.48740 4.52988 4.53614 4.60263 4.68065 4.69249 4.77041 4.79058 4.82729 4.83094 4.86840 4.90772 4.95414 4.99113 5.07980 5.09484 5.12506 5.15785 5.22832 5.24885 5.37643 5.38372 5.47070 5.64227 5.69558 6.10410 6.28255 6.37784 6.39941 6.51924 7.14033 7.83129 8.38411 9.16051 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002544 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.221555 B =11002.221914 C =11413.891470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.107 3.893 4 H 0.064 0.936 5 C 0.041 3.959 6 N -0.679 5.679 7 C 0.109 3.891 8 C -0.100 4.100 9 C 0.142 3.858 10 N -0.609 5.609 11 C -0.269 4.269 12 H 0.060 0.940 13 C -0.045 4.045 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.271 1.271 19 C 0.184 3.816 20 C -0.125 4.125 21 C -0.084 4.084 22 C -0.148 4.148 23 C 0.059 3.941 24 O -0.404 6.404 25 C 0.058 3.942 26 C -0.138 4.138 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.340 0.660 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.010 0.990 37 H 0.051 0.949 38 H 0.251 0.749 39 H -0.004 1.004 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.055 0.945 49 H 0.104 0.896 50 H 0.079 0.921 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 -4.052 -23.738 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.048 3.952 4 H 0.082 0.918 5 C -0.089 4.089 6 N -0.311 5.311 7 C 0.000 4.000 8 C -0.140 4.140 9 C 0.016 3.984 10 N -0.333 5.333 11 C -0.399 4.399 12 H 0.078 0.922 13 C -0.241 4.241 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.196 1.196 19 C 0.058 3.942 20 C -0.164 4.164 21 C -0.103 4.103 22 C -0.185 4.185 23 C -0.018 4.018 24 O -0.323 6.323 25 C -0.018 4.018 26 C -0.176 4.176 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.123 0.877 48 H 0.073 0.927 49 H 0.122 0.878 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.222 -4.669 -23.680 24.925 hybrid contribution -0.666 1.049 1.421 1.888 sum 5.556 -3.620 -22.260 23.226 Atomic orbital electron populations 1.22879 0.80271 1.02912 1.00445 1.87817 1.20671 1.27436 1.94918 1.22080 0.94818 0.85151 0.93109 0.91818 1.22611 0.92391 0.99937 0.93942 1.60535 1.11199 1.57872 1.01471 1.21196 0.95957 0.94980 0.87891 1.21771 1.00475 0.97238 0.94517 1.21054 0.88640 0.94957 0.93749 1.44254 1.31354 1.35444 1.22233 1.19424 1.32429 0.91753 0.96292 0.92205 1.25930 1.02719 0.95621 0.99831 1.70181 1.45608 1.01134 1.40891 0.85301 0.78674 0.77397 0.79213 1.20932 1.21624 1.19557 1.20451 0.96511 0.88101 0.89137 1.22142 0.97388 0.99892 0.97001 1.21239 0.96067 0.97301 0.95737 1.22247 0.98996 0.95986 1.01307 1.22674 0.95528 0.99921 0.83641 1.87901 1.85493 1.28989 1.29956 1.22703 0.94660 0.82960 1.01513 1.22058 0.98512 1.02475 0.94577 0.93811 0.89959 0.92832 0.93658 0.91503 0.84085 0.95079 0.93026 0.91621 0.97229 0.93053 0.93999 0.98582 0.93657 0.91270 0.92611 0.90732 0.91019 0.89923 0.92545 0.87691 0.92663 0.87789 0.90215 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.64 113.37 1.21 1.81 16 2 O -0.39 -8.69 9.45 -148.98 -1.41 -10.10 16 3 C 0.11 2.01 2.02 30.59 0.06 2.07 16 4 H 0.06 1.11 7.76 -2.39 -0.02 1.10 16 5 C 0.04 0.89 4.95 86.30 0.43 1.31 16 6 N -0.68 -17.34 4.62 -491.43 -2.27 -19.61 16 7 C 0.11 3.52 2.46 44.94 0.11 3.63 16 8 C -0.10 -3.57 5.59 30.67 0.17 -3.39 16 9 C 0.14 6.14 6.52 86.36 0.56 6.70 16 10 N -0.61 -31.40 2.96 -699.07 -2.07 -33.48 16 11 C -0.27 -15.16 9.53 84.03 0.80 -14.35 16 12 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 13 C -0.04 -2.55 4.90 84.86 0.42 -2.13 16 14 N -0.93 -55.78 11.54 21.65 0.25 -55.53 16 15 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 C 0.18 8.92 5.27 86.36 0.45 9.38 16 20 C -0.12 -4.58 5.36 30.67 0.16 -4.42 16 21 C -0.08 -1.37 2.04 -10.68 -0.02 -1.39 16 22 C -0.15 -2.11 5.12 30.69 0.16 -1.95 16 23 C 0.06 0.83 6.84 72.02 0.49 1.32 16 24 O -0.40 -7.22 10.77 -148.98 -1.60 -8.83 16 25 C 0.06 0.83 6.84 72.01 0.49 1.32 16 26 C -0.14 -2.11 5.16 30.68 0.16 -1.95 16 27 H 0.04 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.14 6.22 -2.39 -0.01 1.12 16 30 H 0.05 0.92 6.59 -2.39 -0.02 0.90 16 31 H 0.07 1.65 7.41 -2.39 -0.02 1.63 16 32 H 0.34 7.78 7.95 -89.69 -0.71 7.07 16 33 H 0.03 1.04 7.80 -2.39 -0.02 1.03 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.07 2.08 7.42 -2.39 -0.02 2.06 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 38 H 0.25 14.46 8.31 -92.70 -0.77 13.68 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.04 2.47 6.45 -2.39 -0.02 2.45 16 41 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.12 6.77 -2.39 -0.02 1.10 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 51 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -65.04 383.55 0.75 -64.29 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.17 Total: 18.02 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.65 Total: -2.04 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.09 Total: -108.62 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -3.01 Total: -18.93 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.04 0.75 -64.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602540228.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.204 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds