Wall clock time and date at job start Tue Mar 31 2020 10:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47073 * 2 1 4 4 C 1.42902 * 113.99742 * 179.25319 * 3 2 1 5 5 H 1.09002 * 109.47371 * 325.62389 * 4 3 2 6 6 C 1.52997 * 109.47302 * 205.62160 * 4 3 2 7 7 C 1.50703 * 109.47252 * 65.00046 * 6 4 3 8 8 O 1.21283 * 119.99585 * 0.02562 * 7 6 4 9 9 N 1.34766 * 120.00311 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00139 * 180.02562 * 9 7 6 11 11 C 1.53351 * 109.42233 * 275.13025 * 10 9 7 12 12 C 1.53191 * 109.15288 * 178.67461 * 11 10 9 13 13 N 1.46925 * 108.89352 * 54.57798 * 12 11 10 14 14 C 1.36938 * 120.63066 * 126.34017 * 13 12 11 15 15 H 1.07998 * 120.00024 * 331.05222 * 14 13 12 16 16 C 1.38811 * 119.99567 * 151.04845 * 14 13 12 17 17 N 1.31613 * 120.00601 * 344.13241 * 16 14 13 18 18 Si 1.86809 * 119.99443 * 164.13084 * 16 14 13 19 19 H 1.48500 * 109.47268 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46797 * 120.00092 * 18 16 14 21 21 H 1.48490 * 109.47029 * 239.99979 * 18 16 14 22 22 C 1.46928 * 118.73660 * 306.32326 * 13 12 11 23 23 C 1.53045 * 109.46120 * 155.00306 * 10 9 7 24 24 C 1.52997 * 109.46875 * 85.62302 * 4 3 2 25 25 C 1.53006 * 109.47283 * 65.16159 * 24 4 3 26 26 C 1.53006 * 109.47207 * 185.16114 * 24 4 3 27 27 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47322 * 300.00630 * 1 2 3 29 29 H 1.09010 * 109.47183 * 59.99911 * 1 2 3 30 30 H 1.09002 * 109.46887 * 239.99979 * 2 1 3 31 31 H 1.09003 * 109.46624 * 120.00440 * 2 1 3 32 32 H 1.09002 * 109.47266 * 305.00299 * 6 4 3 33 33 H 1.09002 * 109.47014 * 185.00131 * 6 4 3 34 34 H 0.97005 * 119.99950 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46153 * 35.03367 * 10 9 7 36 36 H 1.09010 * 109.68208 * 58.70828 * 11 10 9 37 37 H 1.09000 * 109.47590 * 298.51650 * 11 10 9 38 38 H 1.09006 * 109.58348 * 294.71894 * 12 11 10 39 39 H 1.08998 * 109.58694 * 174.44025 * 12 11 10 40 40 H 0.96998 * 120.00095 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.58391 * 173.39173 * 22 13 12 42 42 H 1.08998 * 109.58698 * 293.67200 * 22 13 12 43 43 H 1.09002 * 109.49730 * 61.43520 * 23 10 9 44 44 H 1.08995 * 109.49590 * 301.34251 * 23 10 9 45 45 H 1.09007 * 109.47423 * 305.16165 * 24 4 3 46 46 H 1.08998 * 109.46804 * 60.00289 * 25 24 4 47 47 H 1.09001 * 109.46832 * 180.02562 * 25 24 4 48 48 H 1.08993 * 109.47058 * 299.99878 * 25 24 4 49 49 H 1.08998 * 109.47053 * 55.00266 * 26 24 4 50 50 H 1.09005 * 109.47060 * 174.99863 * 26 24 4 51 51 H 1.08991 * 109.47202 * 295.00053 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0170 5 1 3.8528 0.6457 0.6060 6 6 3.8289 2.7996 0.6399 7 6 3.4097 2.8250 2.0872 8 8 2.8482 1.8658 2.5728 9 7 3.6596 3.9130 2.8422 10 6 3.2526 3.9374 4.2493 11 6 1.7882 4.3817 4.3489 12 6 1.3594 4.3732 5.8195 13 7 2.2962 5.1993 6.5931 14 6 1.8377 6.2152 7.3888 15 1 0.9217 6.7281 7.1354 16 6 2.5503 6.5855 8.5210 17 7 3.4749 5.7853 9.0078 18 14 2.1967 8.2198 9.3539 19 1 1.1198 8.9284 8.6167 20 1 1.7619 7.9784 10.7532 21 1 3.4269 9.0515 9.3543 22 6 3.7345 4.9146 6.4971 23 6 4.1402 4.9175 5.0199 24 6 3.9654 1.3843 -1.4145 25 6 3.4761 2.5985 -2.2066 26 6 5.4952 1.3756 -1.3878 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3351 3.6104 0.1044 33 1 4.9096 2.9247 0.5724 34 1 4.1090 4.6799 2.4539 35 1 3.3584 2.9397 4.6753 36 1 1.1574 3.6970 3.7820 37 1 1.6860 5.3893 3.9460 38 1 1.3744 3.3513 6.1986 39 1 0.3526 4.7813 5.9089 40 1 3.9730 6.0443 9.7987 41 1 4.2952 5.6814 7.0315 42 1 3.9435 3.9380 6.9338 43 1 4.0159 5.9200 4.6105 44 1 5.1828 4.6133 4.9284 45 1 3.6051 0.4716 -1.8892 46 1 3.8365 3.5111 -1.7320 47 1 3.8567 2.5442 -3.2266 48 1 2.3864 2.6047 -2.2257 49 1 5.8428 0.5625 -0.7505 50 1 5.8755 1.2323 -2.3993 51 1 5.8572 2.3255 -0.9947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610756653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:51 Heat of formation + Delta-G solvation = -87.034343 kcal Electronic energy + Delta-G solvation = -27318.881770 eV Core-core repulsion = 23639.053752 eV Total energy + Delta-G solvation = -3679.828018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.00153 -38.59800 -37.12189 -35.48602 -34.31042 -32.17409 -31.42627 -30.36994 -29.85185 -28.94222 -27.45700 -25.29085 -24.29393 -22.87769 -22.24541 -21.88301 -20.29662 -19.62105 -19.16002 -17.37534 -16.91658 -16.60793 -15.88027 -15.54879 -15.01853 -14.86340 -14.65279 -14.09551 -14.03443 -13.78924 -13.52056 -13.39352 -13.23647 -13.11605 -12.82126 -12.51384 -12.36265 -12.32526 -12.25982 -11.93008 -11.68531 -11.44726 -11.39987 -11.15242 -11.07413 -11.01413 -10.82010 -10.72262 -10.62845 -10.43850 -10.23069 -10.00790 -9.80291 -9.63057 -9.48548 -9.32345 -8.62100 -8.43735 -6.65164 -5.78084 -3.21318 2.92579 3.36929 3.43852 3.45447 3.47800 3.63257 4.44148 4.50501 4.55121 4.79548 4.95969 4.98690 5.04268 5.10896 5.23253 5.31589 5.32832 5.36307 5.36868 5.39567 5.48143 5.54882 5.58482 5.64058 5.65116 5.69706 5.76196 5.80025 5.90909 5.93091 6.03795 6.04821 6.10446 6.12511 6.32491 6.40026 6.56402 6.62779 6.64255 6.84091 6.99784 7.03591 7.23711 7.34235 7.62597 7.79891 7.84811 8.46759 8.54011 9.22623 9.85555 10.43214 11.30789 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.002706 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.198102 B =10344.766283 C =10922.185615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.114 3.886 5 H 0.066 0.934 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.535 6.535 9 N -0.728 5.728 10 C 0.152 3.848 11 C -0.138 4.138 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.250 4.250 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.175 3.825 23 C -0.146 4.146 24 C -0.121 4.121 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.394 0.606 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.020 0.980 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.105 -8.317 -22.658 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.288 6.288 4 C 0.055 3.945 5 H 0.084 0.916 6 C -0.183 4.183 7 C 0.297 3.703 8 O -0.411 6.411 9 N -0.378 5.378 10 C 0.049 3.951 11 C -0.178 4.178 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.380 4.380 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.048 3.952 23 C -0.186 4.186 24 C -0.140 4.140 25 C -0.202 4.202 26 C -0.207 4.207 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.651 -8.827 -22.133 23.975 hybrid contribution 0.314 0.991 0.248 1.069 sum 2.965 -7.837 -21.885 23.434 Atomic orbital electron populations 1.21714 0.94058 1.01872 1.03024 1.22383 0.95331 0.84098 0.99522 1.87905 1.19966 1.26151 1.94761 1.21743 0.82215 0.96720 0.93830 0.91593 1.21920 1.02898 0.99778 0.93663 1.20470 0.79017 0.82855 0.87958 1.90686 1.41434 1.35204 1.73816 1.46349 1.61030 1.17937 1.12530 1.21052 0.94737 1.00355 0.78993 1.22410 0.95419 1.00358 0.99623 1.20873 0.93828 0.94299 0.88946 1.44091 1.00662 1.35709 1.51129 1.19237 1.08727 1.08053 1.01999 0.91655 1.25081 0.99872 0.98706 0.96044 1.70025 1.26775 1.34914 1.23128 0.86221 0.77613 0.83796 0.79142 1.20257 1.21720 1.21592 1.20726 0.85340 1.00173 0.88931 1.22522 0.97387 0.98055 1.00630 1.21660 0.95986 0.99809 0.96511 1.21816 1.01912 0.97324 0.99135 1.21881 0.94655 1.02168 1.01962 0.91483 0.91602 0.92291 0.94247 0.93121 0.88070 0.87907 0.77309 0.90254 0.92674 0.92481 0.96276 0.92669 0.93678 0.89141 0.96164 0.92246 0.92851 0.90957 0.92403 0.93069 0.91927 0.92530 0.92403 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.70 6.46 37.16 0.24 0.94 16 3 O -0.37 -4.72 8.78 -49.64 -0.44 -5.15 16 4 C 0.11 1.21 1.41 -26.73 -0.04 1.18 16 5 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 6 C -0.14 -1.47 4.61 -27.88 -0.13 -1.60 16 7 C 0.51 7.46 7.67 -10.99 -0.08 7.38 16 8 O -0.53 -9.94 15.08 -8.85 -0.13 -10.07 16 9 N -0.73 -10.32 5.08 -53.61 -0.27 -10.59 16 10 C 0.15 2.71 2.42 -67.73 -0.16 2.54 16 11 C -0.14 -2.62 5.68 -26.45 -0.15 -2.77 16 12 C 0.15 3.26 6.50 -3.71 -0.02 3.24 16 13 N -0.59 -15.05 2.99 -172.32 -0.52 -15.57 16 14 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 15 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 16 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 17 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 18 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.17 4.15 5.29 -3.71 -0.02 4.13 16 23 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 24 C -0.12 -0.98 2.85 -90.61 -0.26 -1.24 16 25 C -0.14 -1.11 8.60 37.16 0.32 -0.79 16 26 C -0.15 -1.00 8.83 37.16 0.33 -0.67 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.04 0.36 7.47 -51.93 -0.39 -0.03 16 31 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 32 H 0.10 0.95 6.65 -51.93 -0.35 0.60 16 33 H 0.10 0.80 6.46 -51.93 -0.34 0.47 16 34 H 0.39 4.43 8.60 -40.82 -0.35 4.08 16 35 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 36 H 0.05 1.05 8.14 -51.92 -0.42 0.62 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 1.20 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 2.38 6.09 -51.93 -0.32 2.06 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.59 7.46 -51.93 -0.39 0.20 16 46 H 0.06 0.41 6.46 -51.93 -0.34 0.08 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.06 0.37 6.71 -51.93 -0.35 0.02 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -32.01 393.54 -9.27 -41.28 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.46 Total: 1.88 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.02 Total: 1.27 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.17 Total: -51.78 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.57 Total: -15.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -9.27 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610756653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.755 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds