Wall clock time and date at job start Tue Mar 31 2020 10:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47073 * 2 1 4 4 C 1.42902 * 113.99742 * 179.25319 * 3 2 1 5 5 H 1.09002 * 109.47371 * 325.62389 * 4 3 2 6 6 C 1.52997 * 109.47302 * 205.62160 * 4 3 2 7 7 C 1.50703 * 109.47252 * 65.00046 * 6 4 3 8 8 O 1.21283 * 119.99585 * 0.02562 * 7 6 4 9 9 N 1.34766 * 120.00311 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00139 * 180.02562 * 9 7 6 11 11 C 1.53351 * 109.42233 * 275.13025 * 10 9 7 12 12 C 1.53191 * 109.15288 * 178.67461 * 11 10 9 13 13 N 1.46925 * 108.89352 * 54.57798 * 12 11 10 14 14 C 1.36938 * 120.63066 * 126.34017 * 13 12 11 15 15 H 1.07998 * 120.00024 * 331.05222 * 14 13 12 16 16 C 1.38811 * 119.99567 * 151.04845 * 14 13 12 17 17 N 1.31613 * 120.00601 * 344.13241 * 16 14 13 18 18 Si 1.86809 * 119.99443 * 164.13084 * 16 14 13 19 19 H 1.48500 * 109.47268 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46797 * 120.00092 * 18 16 14 21 21 H 1.48490 * 109.47029 * 239.99979 * 18 16 14 22 22 C 1.46928 * 118.73660 * 306.32326 * 13 12 11 23 23 C 1.53045 * 109.46120 * 155.00306 * 10 9 7 24 24 C 1.52997 * 109.46875 * 85.62302 * 4 3 2 25 25 C 1.53006 * 109.47283 * 65.16159 * 24 4 3 26 26 C 1.53006 * 109.47207 * 185.16114 * 24 4 3 27 27 H 1.08999 * 109.47631 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47322 * 300.00630 * 1 2 3 29 29 H 1.09010 * 109.47183 * 59.99911 * 1 2 3 30 30 H 1.09002 * 109.46887 * 239.99979 * 2 1 3 31 31 H 1.09003 * 109.46624 * 120.00440 * 2 1 3 32 32 H 1.09002 * 109.47266 * 305.00299 * 6 4 3 33 33 H 1.09002 * 109.47014 * 185.00131 * 6 4 3 34 34 H 0.97005 * 119.99950 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46153 * 35.03367 * 10 9 7 36 36 H 1.09010 * 109.68208 * 58.70828 * 11 10 9 37 37 H 1.09000 * 109.47590 * 298.51650 * 11 10 9 38 38 H 1.09006 * 109.58348 * 294.71894 * 12 11 10 39 39 H 1.08998 * 109.58694 * 174.44025 * 12 11 10 40 40 H 0.96998 * 120.00095 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.58391 * 173.39173 * 22 13 12 42 42 H 1.08998 * 109.58698 * 293.67200 * 22 13 12 43 43 H 1.09002 * 109.49730 * 61.43520 * 23 10 9 44 44 H 1.08995 * 109.49590 * 301.34251 * 23 10 9 45 45 H 1.09007 * 109.47423 * 305.16165 * 24 4 3 46 46 H 1.08998 * 109.46804 * 60.00289 * 25 24 4 47 47 H 1.09001 * 109.46832 * 180.02562 * 25 24 4 48 48 H 1.08993 * 109.47058 * 299.99878 * 25 24 4 49 49 H 1.08998 * 109.47053 * 55.00266 * 26 24 4 50 50 H 1.09005 * 109.47060 * 174.99863 * 26 24 4 51 51 H 1.08991 * 109.47202 * 295.00053 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0170 5 1 3.8528 0.6457 0.6060 6 6 3.8289 2.7996 0.6399 7 6 3.4097 2.8250 2.0872 8 8 2.8482 1.8658 2.5728 9 7 3.6596 3.9130 2.8422 10 6 3.2526 3.9374 4.2493 11 6 1.7882 4.3817 4.3489 12 6 1.3594 4.3732 5.8195 13 7 2.2962 5.1993 6.5931 14 6 1.8377 6.2152 7.3888 15 1 0.9217 6.7281 7.1354 16 6 2.5503 6.5855 8.5210 17 7 3.4749 5.7853 9.0078 18 14 2.1967 8.2198 9.3539 19 1 1.1198 8.9284 8.6167 20 1 1.7619 7.9784 10.7532 21 1 3.4269 9.0515 9.3543 22 6 3.7345 4.9146 6.4971 23 6 4.1402 4.9175 5.0199 24 6 3.9654 1.3843 -1.4145 25 6 3.4761 2.5985 -2.2066 26 6 5.4952 1.3756 -1.3878 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3351 3.6104 0.1044 33 1 4.9096 2.9247 0.5724 34 1 4.1090 4.6799 2.4539 35 1 3.3584 2.9397 4.6753 36 1 1.1574 3.6970 3.7820 37 1 1.6860 5.3893 3.9460 38 1 1.3744 3.3513 6.1986 39 1 0.3526 4.7813 5.9089 40 1 3.9730 6.0443 9.7987 41 1 4.2952 5.6814 7.0315 42 1 3.9435 3.9380 6.9338 43 1 4.0159 5.9200 4.6105 44 1 5.1828 4.6133 4.9284 45 1 3.6051 0.4716 -1.8892 46 1 3.8365 3.5111 -1.7320 47 1 3.8567 2.5442 -3.2266 48 1 2.3864 2.6047 -2.2257 49 1 5.8428 0.5625 -0.7505 50 1 5.8755 1.2323 -2.3993 51 1 5.8572 2.3255 -0.9947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610756653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:50 Heat of formation + Delta-G solvation = -106.293304 kcal Electronic energy + Delta-G solvation = -27319.716902 eV Core-core repulsion = 23639.053752 eV Total energy + Delta-G solvation = -3680.663150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.12966 -39.70071 -38.66231 -36.22769 -35.92921 -33.93390 -32.33593 -31.86017 -31.41929 -30.26376 -27.98965 -26.99166 -25.38686 -23.96210 -23.75768 -23.47764 -21.48536 -21.02618 -20.24187 -18.92631 -18.08538 -17.78415 -17.21765 -16.77463 -16.43696 -16.02978 -15.90349 -15.45973 -15.35216 -14.92128 -14.82811 -14.75310 -14.46625 -14.15375 -14.07742 -13.96849 -13.61222 -13.21803 -13.05650 -13.01409 -12.98007 -12.67561 -12.63776 -12.52965 -12.43260 -12.21354 -12.08366 -11.99479 -11.89099 -11.83276 -11.70968 -11.55114 -11.38067 -11.33430 -10.71932 -10.57979 -10.27429 -9.93240 -8.71068 -7.88763 -5.36101 1.47207 1.48812 1.59917 1.78388 2.27378 2.51001 2.81252 3.27290 3.63071 3.70059 3.79716 3.90395 4.04021 4.05880 4.17273 4.23906 4.31622 4.33124 4.38996 4.45558 4.46470 4.51441 4.58151 4.63315 4.70332 4.81903 4.85708 4.87007 4.91812 4.94109 5.04018 5.05005 5.06695 5.09418 5.12315 5.14762 5.25365 5.26766 5.28253 5.45894 5.48172 5.50392 5.62051 5.63837 5.70241 6.38305 6.39865 6.70747 7.13512 7.41266 7.82234 8.35940 9.18403 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.002706 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.198102 B =10344.766283 C =10922.185615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 O -0.391 6.391 4 C 0.109 3.891 5 H 0.049 0.951 6 C -0.133 4.133 7 C 0.507 3.493 8 O -0.579 6.579 9 N -0.716 5.716 10 C 0.164 3.836 11 C -0.122 4.122 12 C 0.145 3.855 13 N -0.609 5.609 14 C -0.264 4.264 15 H 0.066 0.934 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.286 1.286 22 C 0.179 3.821 23 C -0.127 4.127 24 C -0.113 4.113 25 C -0.143 4.143 26 C -0.148 4.148 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.413 0.587 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.004 0.996 39 H 0.055 0.945 40 H 0.251 0.749 41 H 0.063 0.937 42 H -0.007 1.007 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -7.150 -25.268 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 O -0.311 6.311 4 C 0.050 3.950 5 H 0.067 0.933 6 C -0.172 4.172 7 C 0.295 3.705 8 O -0.459 6.459 9 N -0.367 5.367 10 C 0.059 3.941 11 C -0.162 4.162 12 C 0.019 3.981 13 N -0.333 5.333 14 C -0.394 4.394 15 H 0.084 0.916 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.798 3.202 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.213 1.213 22 C 0.053 3.947 23 C -0.167 4.167 24 C -0.132 4.132 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.250 0.750 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.011 0.989 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.435 -7.645 -24.793 26.171 hybrid contribution 0.037 0.540 1.075 1.203 sum 3.472 -7.105 -23.718 25.002 Atomic orbital electron populations 1.21718 0.93463 1.02969 1.02196 1.22458 0.95897 0.83677 0.99575 1.87868 1.21267 1.26965 1.94951 1.21893 0.81375 0.96345 0.95364 0.93308 1.21986 1.04963 1.00180 0.90092 1.21268 0.77887 0.81858 0.89484 1.90682 1.43378 1.36820 1.74975 1.46085 1.60951 1.18885 1.10828 1.20626 0.93877 0.98532 0.81113 1.22197 0.96242 1.00795 0.96961 1.20945 0.93573 0.92950 0.90643 1.44346 1.01698 1.35865 1.51368 1.19548 1.08854 1.08602 1.02414 0.91595 1.25860 0.99956 1.01897 0.96769 1.70183 1.27839 1.36599 1.23555 0.85165 0.77631 0.79716 0.77657 1.19087 1.22075 1.21272 1.20557 0.84515 0.97546 0.92077 1.22241 0.98725 0.98955 0.96771 1.21583 0.96947 1.00100 0.94533 1.21807 1.00978 0.97336 0.99902 1.21887 0.93309 1.02622 1.02740 0.89504 0.93848 0.91548 0.92190 0.94979 0.86381 0.84669 0.75037 0.92910 0.92668 0.91633 0.97791 0.92616 0.93974 0.91872 0.98940 0.91101 0.90393 0.91140 0.91508 0.91816 0.93410 0.92875 0.91272 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.06 1.32 6.46 71.98 0.46 1.79 16 3 O -0.39 -9.76 8.78 -135.21 -1.19 -10.95 16 4 C 0.11 2.17 1.41 30.59 0.04 2.21 16 5 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 6 C -0.13 -2.38 4.61 29.85 0.14 -2.24 16 7 C 0.51 14.05 7.67 87.66 0.67 14.72 16 8 O -0.58 -21.62 15.08 10.73 0.16 -21.46 16 9 N -0.72 -18.74 5.08 -441.92 -2.24 -20.98 16 10 C 0.16 5.70 2.42 45.12 0.11 5.81 16 11 C -0.12 -4.56 5.68 30.78 0.17 -4.38 16 12 C 0.15 6.54 6.50 86.36 0.56 7.10 16 13 N -0.61 -31.44 2.99 -699.10 -2.09 -33.53 16 14 C -0.26 -14.72 9.58 84.03 0.81 -13.91 16 15 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 16 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 17 N -0.94 -55.59 11.19 21.65 0.24 -55.34 16 18 Si 0.97 44.79 29.58 68.60 2.03 46.82 16 19 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 C 0.18 8.69 5.29 86.36 0.46 9.15 16 23 C -0.13 -4.57 5.55 30.67 0.17 -4.40 16 24 C -0.11 -1.56 2.85 -10.79 -0.03 -1.59 16 25 C -0.14 -1.79 8.60 71.98 0.62 -1.17 16 26 C -0.15 -1.53 8.83 71.98 0.64 -0.90 16 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.04 7.47 -2.39 -0.02 1.02 16 31 H 0.03 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.12 1.79 6.65 -2.39 -0.02 1.77 16 33 H 0.14 1.56 6.46 -2.39 -0.02 1.54 16 34 H 0.41 7.83 8.60 -92.70 -0.80 7.03 16 35 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.06 3.40 6.09 -2.39 -0.01 3.39 16 42 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.07 1.00 7.46 -2.38 -0.02 0.99 16 46 H 0.07 0.71 6.46 -2.39 -0.02 0.69 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.05 0.75 7.83 -2.39 -0.02 0.73 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.07 0.58 6.71 -2.39 -0.02 0.57 16 Total: -1.00 -71.42 393.54 2.98 -68.44 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.09 Total: 19.32 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.98 Total: 7.68 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.09 Total: -109.86 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.02 Total: -32.41 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.42 2.98 -68.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610756653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.856 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds