Wall clock time and date at job start Tue Mar 31 2020 10:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47035 * 2 1 4 4 C 1.53002 * 109.47097 * 240.00057 * 2 1 3 5 5 N 1.46900 * 109.47220 * 64.14112 * 4 2 1 6 6 C 1.46898 * 111.00057 * 199.69955 * 5 4 2 7 7 C 1.50699 * 109.47565 * 66.04507 * 6 5 4 8 8 H 1.08008 * 119.99498 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00498 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99623 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00371 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46823 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46883 * 120.00005 * 11 9 7 14 14 H 1.48494 * 109.47439 * 240.00013 * 11 9 7 15 15 C 1.46894 * 111.00231 * 75.74135 * 5 4 2 16 16 C 1.52996 * 109.47323 * 199.68045 * 15 5 4 17 17 N 1.46907 * 109.47035 * 175.61434 * 16 15 5 18 18 C 1.47008 * 110.99924 * 293.63171 * 17 16 15 19 19 C 1.53094 * 109.26017 * 177.60889 * 18 17 16 20 20 O 1.43018 * 109.25947 * 56.84665 * 19 18 17 21 21 C 1.43017 * 113.74090 * 301.33434 * 20 19 18 22 22 C 1.47010 * 110.99736 * 169.99855 * 17 16 15 23 23 C 1.52995 * 109.47241 * 120.00026 * 2 1 3 24 24 C 1.53002 * 109.47241 * 180.02562 * 23 2 1 25 25 C 1.53002 * 109.47100 * 300.00028 * 23 2 1 26 26 C 1.52997 * 109.47303 * 59.99869 * 23 2 1 27 27 H 1.09001 * 109.47338 * 60.00010 * 1 2 3 28 28 H 1.08999 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46988 * 299.99738 * 1 2 3 30 30 H 1.09004 * 109.46995 * 304.14348 * 4 2 1 31 31 H 1.08997 * 109.46999 * 184.14371 * 4 2 1 32 32 H 1.09001 * 109.46860 * 186.04729 * 6 5 4 33 33 H 1.09001 * 109.46813 * 306.04549 * 6 5 4 34 34 H 0.97000 * 119.99923 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47037 * 79.67485 * 15 5 4 36 36 H 1.09006 * 109.47031 * 319.67852 * 15 5 4 37 37 H 1.08994 * 109.47494 * 55.61522 * 16 15 5 38 38 H 1.09001 * 109.46996 * 295.60855 * 16 15 5 39 39 H 1.09001 * 109.50903 * 297.54223 * 18 17 16 40 40 H 1.09003 * 109.51032 * 57.67427 * 18 17 16 41 41 H 1.09007 * 109.50803 * 296.91545 * 19 18 17 42 42 H 1.08995 * 109.54629 * 176.80492 * 19 18 17 43 43 H 1.08995 * 109.50552 * 298.73723 * 21 20 19 44 44 H 1.08996 * 109.54327 * 178.61834 * 21 20 19 45 45 H 1.08999 * 109.50770 * 302.32571 * 22 17 16 46 46 H 1.09002 * 109.50936 * 62.41591 * 22 17 16 47 47 H 1.08999 * 109.47035 * 59.99974 * 24 23 2 48 48 H 1.09001 * 109.47338 * 179.97438 * 24 23 2 49 49 H 1.09001 * 109.46988 * 300.00236 * 24 23 2 50 50 H 1.08996 * 109.47397 * 59.99710 * 25 23 2 51 51 H 1.08998 * 109.47255 * 180.02562 * 25 23 2 52 52 H 1.09008 * 109.46547 * 299.99876 * 25 23 2 53 53 H 1.09000 * 109.46857 * 60.00392 * 26 23 2 54 54 H 1.09001 * 109.47224 * 179.97438 * 26 23 2 55 55 H 1.09000 * 109.47252 * 299.99999 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6337 0.0266 -2.4466 6 6 1.6787 -0.8273 -3.6411 7 6 0.6371 -1.9101 -3.5241 8 1 0.0046 -1.9588 -2.6499 9 6 0.4908 -2.8380 -4.5333 10 7 1.2606 -2.7784 -5.5980 11 14 -0.7999 -4.1806 -4.3880 12 1 -1.5293 -4.0289 -3.1034 13 1 -1.7584 -4.0701 -5.5169 14 1 -0.1385 -5.5095 -4.4284 15 6 2.4633 1.2256 -2.6251 16 6 1.7405 2.2140 -3.5425 17 7 2.5209 3.4550 -3.6370 18 6 2.5597 4.1527 -2.3437 19 6 3.4300 5.4057 -2.4717 20 8 2.9146 6.2332 -3.5181 21 6 2.8633 5.5854 -4.7921 22 6 1.9872 4.3342 -4.6874 23 6 2.0400 -0.7212 1.2492 24 6 3.5700 -0.7207 1.2495 25 6 1.5300 0.0000 2.4985 26 6 1.5301 -2.1637 1.2493 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6173 -1.7253 -1.2872 31 1 3.1275 -0.7860 -1.2129 32 1 1.4780 -0.2242 -4.5266 33 1 2.6662 -1.2808 -3.7265 34 1 1.1579 -3.4314 -6.3079 35 1 3.4165 0.9446 -3.0729 36 1 2.6406 1.6923 -1.6561 37 1 0.7546 2.4350 -3.1336 38 1 1.6325 1.7763 -4.5349 39 1 1.5487 4.4399 -2.0545 40 1 2.9818 3.4922 -1.5862 41 1 4.4537 5.1152 -2.7083 42 1 3.4162 5.9569 -1.5315 43 1 3.8703 5.3001 -5.0961 44 1 2.4392 6.2660 -5.5304 45 1 1.9914 3.8062 -5.6410 46 1 0.9668 4.6236 -4.4361 47 1 3.9330 0.3071 1.2497 48 1 3.9334 -1.2341 2.1397 49 1 3.9337 -1.2342 0.3595 50 1 0.4401 0.0001 2.4985 51 1 1.8937 -0.5135 3.3884 52 1 1.8934 1.0277 2.4984 53 1 1.8934 -2.6775 0.3593 54 1 1.8938 -2.6777 2.1390 55 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619843595.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:00 Heat of formation + Delta-G solvation = -72.175774 kcal Electronic energy + Delta-G solvation = -28385.189738 eV Core-core repulsion = 24841.839130 eV Total energy + Delta-G solvation = -3543.350608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.65449 -40.01033 -37.94217 -36.46190 -34.62789 -32.22545 -32.01119 -30.83160 -29.32821 -28.36820 -28.08165 -26.85998 -25.75334 -24.97581 -23.95474 -23.03288 -21.40800 -21.17947 -18.93724 -18.54639 -17.63086 -17.12182 -16.95127 -16.31403 -16.19742 -16.04850 -15.96270 -15.89767 -15.36049 -15.03502 -14.92033 -14.69971 -14.49358 -14.16220 -14.10785 -13.53036 -13.48394 -13.23153 -13.12810 -12.84637 -12.81668 -12.69407 -12.62419 -12.54150 -12.50319 -12.44251 -12.32189 -12.09930 -11.91983 -11.84987 -11.61588 -11.38939 -11.32021 -11.14342 -10.99552 -10.90231 -10.65567 -10.58015 -9.42459 -8.92915 -8.18856 -6.27147 1.38589 1.39735 1.52530 2.39414 2.63457 2.95345 3.14063 3.43005 3.83178 3.92403 3.95031 3.98670 4.02336 4.04895 4.19239 4.24173 4.28097 4.33609 4.41987 4.50395 4.58190 4.63165 4.65574 4.72786 4.75747 4.81916 4.82727 4.85748 4.88197 4.88793 4.93966 4.97531 5.03324 5.05344 5.07327 5.12960 5.16134 5.19990 5.25117 5.29719 5.33695 5.37585 5.41856 5.54879 5.68353 5.69387 5.77339 5.91006 5.97881 6.10857 6.16969 6.41693 6.69833 6.90294 7.42077 8.92560 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.008798 B = 0.004760 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3181.625412 B = 5881.446958 C = 8465.704060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 H 0.066 0.934 4 C 0.070 3.930 5 N -0.534 5.534 6 C 0.212 3.788 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.961 3.039 12 H -0.262 1.262 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.069 3.931 16 C 0.078 3.922 17 N -0.545 5.545 18 C 0.016 3.984 19 C 0.066 3.934 20 O -0.402 6.402 21 C 0.069 3.931 22 C 0.016 3.984 23 C -0.062 4.062 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.144 4.144 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.004 0.996 33 H -0.047 1.047 34 H 0.262 0.738 35 H 0.013 0.987 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.059 0.941 53 H 0.037 0.963 54 H 0.064 0.936 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 12.949 12.489 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.057 4.057 5 N -0.258 5.258 6 C 0.086 3.914 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.059 4.059 16 C -0.050 4.050 17 N -0.271 5.271 18 C -0.112 4.112 19 C -0.011 4.011 20 O -0.321 6.321 21 C -0.008 4.008 22 C -0.112 4.112 23 C -0.062 4.062 24 C -0.198 4.198 25 C -0.192 4.192 26 C -0.202 4.202 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.022 0.978 33 H -0.029 1.029 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.136 0.864 45 H 0.102 0.898 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.077 0.923 51 H 0.081 0.919 52 H 0.078 0.922 53 H 0.057 0.943 54 H 0.083 0.917 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.304 13.083 12.294 18.255 hybrid contribution -0.448 -1.536 -0.822 1.798 sum 2.856 11.547 11.473 16.526 Atomic orbital electron populations 1.21700 0.95150 1.00989 1.00926 1.21044 0.96124 0.98437 0.92420 0.91588 1.22141 0.96250 0.97665 0.89679 1.61936 1.52730 1.07259 1.03917 1.19346 0.93291 0.90833 0.87943 1.21456 1.17980 1.11201 1.04272 0.91870 1.25834 0.98341 1.00370 0.94944 1.70099 1.40922 1.37500 1.09136 0.85459 0.78909 0.78633 0.78424 1.18643 1.20601 1.20605 1.21929 0.93442 0.91421 0.99116 1.21805 0.94465 0.89388 0.99324 1.62160 1.53256 1.05073 1.06582 1.22883 0.99895 0.96705 0.91687 1.22788 0.96339 0.90243 0.91733 1.87937 1.85582 1.40060 1.18507 1.22735 0.99527 0.92901 0.85652 1.22827 0.97351 0.94904 0.96103 1.20526 0.95499 0.95310 0.94911 1.21908 0.94641 1.01845 1.01397 1.21851 1.01228 1.00090 0.95983 1.21960 1.01147 0.95883 1.01169 0.93843 0.94039 0.91663 0.92105 0.96348 0.97772 1.02898 0.92891 0.96853 0.89849 0.94753 0.93051 0.94479 0.88944 0.92058 0.86279 0.92044 0.86441 0.89784 0.94488 0.92229 0.91659 0.94128 0.92325 0.91883 0.92243 0.94349 0.91744 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 8.37 71.98 0.60 -3.32 16 2 C -0.06 -1.78 1.79 -10.79 -0.02 -1.80 16 3 H 0.07 1.82 6.67 -2.39 -0.02 1.81 16 4 C 0.07 2.66 3.47 86.30 0.30 2.96 16 5 N -0.53 -22.56 3.77 -900.81 -3.40 -25.96 16 6 C 0.21 11.31 4.55 85.56 0.39 11.70 16 7 C -0.51 -28.74 8.23 25.60 0.21 -28.53 16 8 H 0.06 3.50 7.31 -2.91 -0.02 3.48 16 9 C 0.00 0.16 5.46 84.65 0.46 0.62 16 10 N -0.94 -56.75 13.29 21.45 0.28 -56.47 16 11 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.07 2.51 4.84 86.30 0.42 2.93 16 16 C 0.08 2.72 5.00 86.30 0.43 3.15 16 17 N -0.54 -15.60 4.73 -895.22 -4.23 -19.83 16 18 C 0.02 0.38 5.44 86.31 0.47 0.85 16 19 C 0.07 1.31 7.01 72.01 0.50 1.81 16 20 O -0.40 -9.37 10.83 -148.98 -1.61 -10.98 16 21 C 0.07 1.44 7.01 72.02 0.50 1.94 16 22 C 0.02 0.41 5.64 86.32 0.49 0.90 16 23 C -0.06 -1.48 0.57 -52.18 -0.03 -1.51 16 24 C -0.14 -3.19 8.13 71.98 0.59 -2.61 16 25 C -0.13 -2.55 8.12 71.98 0.58 -1.97 16 26 C -0.14 -3.74 7.77 71.98 0.56 -3.18 16 27 H 0.04 1.50 7.73 -2.39 -0.02 1.48 16 28 H 0.04 1.33 6.43 -2.39 -0.02 1.32 16 29 H 0.06 1.60 6.43 -2.39 -0.02 1.58 16 30 H 0.06 2.64 5.09 -2.39 -0.01 2.63 16 31 H 0.02 0.70 6.07 -2.39 -0.01 0.68 16 32 H 0.00 0.24 6.70 -2.39 -0.02 0.23 16 33 H -0.05 -2.76 8.12 -2.39 -0.02 -2.78 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.01 0.53 8.00 -2.39 -0.02 0.51 16 36 H 0.08 2.59 4.64 -2.38 -0.01 2.58 16 37 H 0.03 1.22 8.12 -2.39 -0.02 1.20 16 38 H 0.05 2.06 6.82 -2.39 -0.02 2.04 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 40 H 0.09 2.06 6.30 -2.39 -0.02 2.04 16 41 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 45 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 46 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.04 1.07 6.34 -2.39 -0.02 1.06 16 50 H 0.06 1.11 6.43 -2.39 -0.02 1.10 16 51 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 53 H 0.04 1.16 6.52 -2.39 -0.02 1.15 16 54 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 55 H 0.05 1.45 6.43 -2.39 -0.02 1.44 16 Total: -1.00 -64.38 400.99 0.35 -64.03 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.83 Total: 18.66 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 6.46 Total: -16.05 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -7.34 Total: -102.26 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.61 Total: -10.98 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.38 0.35 -64.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619843595.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.150 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds