Wall clock time and date at job start Tue Mar 31 2020 10:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46832 * 2 1 4 4 C 1.53000 * 109.46565 * 171.93160 * 3 2 1 5 5 C 1.53005 * 109.46836 * 184.99783 * 4 3 2 6 6 C 1.52999 * 109.47071 * 291.92746 * 3 2 1 7 7 N 1.46904 * 109.47020 * 66.76830 * 6 3 2 8 8 C 1.46907 * 110.99704 * 81.66926 * 7 6 3 9 9 C 1.50700 * 109.46886 * 285.37156 * 8 7 6 10 10 H 1.07996 * 120.00249 * 358.55444 * 9 8 7 11 11 C 1.37878 * 119.99768 * 178.55064 * 9 8 7 12 12 N 1.31518 * 119.99989 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00153 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47188 * 60.00070 * 13 11 9 15 15 H 1.48494 * 109.47550 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46877 * 300.00522 * 13 11 9 17 17 C 1.46891 * 111.00009 * 205.62171 * 7 6 3 18 18 C 1.52997 * 109.47307 * 78.24357 * 17 7 6 19 19 H 1.08999 * 109.47285 * 53.98087 * 18 17 7 20 20 O 1.42906 * 109.46970 * 293.98275 * 18 17 7 21 21 C 1.53004 * 109.47511 * 173.98525 * 18 17 7 22 22 N 1.46896 * 109.47271 * 184.99754 * 21 18 17 23 23 C 1.48536 * 110.99671 * 52.60091 * 22 21 18 24 24 C 1.54943 * 103.22225 * 159.72030 * 23 22 21 25 25 C 1.54592 * 102.92584 * 322.58452 * 24 23 22 26 26 C 1.47898 * 111.00005 * 169.99643 * 22 21 18 27 27 H 1.09004 * 109.46728 * 64.94796 * 1 2 3 28 28 H 1.08997 * 109.47048 * 184.94264 * 1 2 3 29 29 H 1.08996 * 109.47424 * 304.95186 * 1 2 3 30 30 H 1.08996 * 109.47226 * 239.99909 * 2 1 3 31 31 H 1.09004 * 109.46513 * 119.99876 * 2 1 3 32 32 H 1.08991 * 109.47315 * 51.93296 * 3 2 1 33 33 H 1.08997 * 109.47137 * 304.99765 * 4 3 2 34 34 H 1.08998 * 109.47664 * 64.99942 * 4 3 2 35 35 H 1.09005 * 109.46827 * 60.00057 * 5 4 3 36 36 H 1.09003 * 109.47130 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.47243 * 299.99917 * 5 4 3 38 38 H 1.08996 * 109.47192 * 306.76855 * 6 3 2 39 39 H 1.09001 * 109.46942 * 186.76708 * 6 3 2 40 40 H 1.09002 * 109.47016 * 45.37088 * 8 7 6 41 41 H 1.08999 * 109.46999 * 165.37418 * 8 7 6 42 42 H 0.97002 * 119.99724 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.47136 * 318.24148 * 17 7 6 44 44 H 1.09001 * 109.47186 * 198.24259 * 17 7 6 45 45 H 0.96702 * 113.99680 * 299.99690 * 20 18 17 46 46 H 1.09005 * 109.46444 * 304.99827 * 21 18 17 47 47 H 1.08999 * 109.46975 * 64.99730 * 21 18 17 48 48 H 1.08996 * 110.66976 * 278.15225 * 23 22 21 49 49 H 1.08994 * 110.67196 * 41.28916 * 23 22 21 50 50 H 1.09000 * 110.71915 * 204.22307 * 24 23 22 51 51 H 1.09005 * 110.72675 * 80.94765 * 24 23 22 52 52 H 1.08997 * 110.30705 * 263.04446 * 25 24 23 53 53 H 1.08997 * 110.30964 * 140.87184 * 25 24 23 54 54 H 1.09001 * 109.92003 * 333.50756 * 26 22 21 55 55 H 1.08995 * 109.91708 * 94.60709 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5565 1.4472 0.2025 5 6 4.0499 2.8902 0.3272 6 6 1.7021 2.1029 -1.3381 7 7 0.2450 2.2448 -1.4600 8 6 -0.2302 3.4337 -0.7397 9 6 -0.2074 3.1651 0.7430 10 1 0.1045 2.1993 1.1121 11 6 -0.5846 4.1525 1.6283 12 7 -0.9648 5.3286 1.1787 13 14 -0.5556 3.8200 3.4662 14 1 0.8261 3.4719 3.8845 15 1 -1.0033 5.0333 4.1960 16 1 -1.4670 2.6901 3.7792 17 6 -0.1638 2.2853 -2.8703 18 6 -0.1617 0.8666 -3.4430 19 1 -0.7765 0.2208 -2.8161 20 8 1.1769 0.3670 -3.4730 21 6 -0.7295 0.8890 -4.8636 22 7 -0.8390 -0.4859 -5.3690 23 6 -1.5907 -1.3442 -4.4179 24 6 -2.0552 -2.5295 -5.3012 25 6 -2.3914 -1.8469 -6.6469 26 6 -1.6003 -0.5257 -6.6364 27 1 -0.3633 0.4352 -0.9310 28 1 -0.3633 -1.0238 0.0885 29 1 -0.3634 0.5887 0.8423 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.5637 1.9963 0.8090 33 1 3.8034 0.8990 1.1116 34 1 4.0386 0.9710 -0.6512 35 1 3.5678 3.3664 1.1810 36 1 5.1304 2.8936 0.4710 37 1 3.8030 3.4384 -0.5820 38 1 2.0763 1.4839 -2.1535 39 1 2.1682 3.0871 -1.3855 40 1 0.4193 4.2793 -0.9659 41 1 -1.2489 3.6643 -1.0515 42 1 -1.2305 6.0231 1.8016 43 1 0.5340 2.9054 -3.4332 44 1 -1.1664 2.7062 -2.9461 45 1 1.7813 0.8939 -4.0136 46 1 -1.7163 1.3520 -4.8531 47 1 -0.0660 1.4624 -5.5110 48 1 -0.9390 -1.6935 -3.6172 49 1 -2.4483 -0.8084 -4.0113 50 1 -2.9406 -3.0028 -4.8769 51 1 -1.2515 -3.2551 -5.4269 52 1 -3.4608 -1.6470 -6.7129 53 1 -2.0707 -2.4732 -7.4793 54 1 -2.2877 0.3190 -6.6834 55 1 -0.9143 -0.4935 -7.4827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749117986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:06 Heat of formation + Delta-G solvation = -61.794754 kcal Electronic energy + Delta-G solvation = -28939.861403 eV Core-core repulsion = 25396.960950 eV Total energy + Delta-G solvation = -3542.900453 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.50301 -39.47619 -37.59114 -35.84763 -34.43120 -33.30512 -32.65799 -30.58270 -29.74552 -29.16877 -27.75873 -25.79589 -25.22669 -23.28496 -22.58033 -22.10978 -21.58784 -21.32241 -20.69209 -18.38142 -17.49974 -17.30881 -16.84112 -16.67088 -16.21819 -16.04806 -15.64016 -15.48954 -15.01581 -14.63720 -14.56697 -14.37075 -14.18691 -14.08238 -13.73156 -13.34510 -13.28301 -13.14314 -13.06312 -12.92385 -12.80484 -12.67867 -12.49931 -12.37106 -12.20891 -12.14710 -12.07381 -12.01067 -11.94178 -11.66224 -11.64662 -11.41137 -11.32444 -11.12322 -10.95052 -10.55927 -10.45134 -10.11998 -9.32640 -8.63736 -8.10599 -6.14611 1.40854 1.41971 1.48841 2.43220 2.92118 3.21632 3.36493 3.63624 3.77541 3.82121 4.08529 4.11807 4.15542 4.21932 4.26239 4.33357 4.37679 4.44851 4.50123 4.57731 4.66386 4.70433 4.74745 4.79194 4.81955 4.86285 4.93148 4.95604 4.98984 5.00622 5.10118 5.10912 5.12814 5.17726 5.23321 5.23972 5.32671 5.33796 5.36075 5.42299 5.45434 5.49802 5.60650 5.70745 5.78036 5.97853 6.03336 6.08171 6.20253 6.26970 6.53028 6.77610 6.98628 7.03661 7.52203 8.99762 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003875 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.837964 B = 7223.722288 C = 7836.313443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.104 4.104 4 C -0.110 4.110 5 C -0.147 4.147 6 C 0.072 3.928 7 N -0.516 5.516 8 C 0.208 3.792 9 C -0.503 4.503 10 H 0.095 0.905 11 C 0.001 3.999 12 N -0.940 5.940 13 Si 0.945 3.055 14 H -0.269 1.269 15 H -0.290 1.290 16 H -0.270 1.270 17 C 0.020 3.980 18 C 0.134 3.866 19 H 0.092 0.908 20 O -0.546 6.546 21 C 0.022 3.978 22 N -0.514 5.514 23 C 0.030 3.970 24 C -0.121 4.121 25 C -0.127 4.127 26 C 0.030 3.970 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.003 0.997 40 H -0.043 1.043 41 H -0.006 1.006 42 H 0.258 0.742 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.377 0.623 46 H 0.040 0.960 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.037 0.963 50 H 0.080 0.920 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.082 0.918 54 H 0.042 0.958 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -13.168 -14.129 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.147 4.147 5 C -0.204 4.204 6 C -0.055 4.055 7 N -0.239 5.239 8 C 0.082 3.918 9 C -0.541 4.541 10 H 0.113 0.887 11 C -0.196 4.196 12 N -0.582 5.582 13 Si 0.771 3.229 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.195 1.195 17 C -0.110 4.110 18 C 0.074 3.926 19 H 0.109 0.891 20 O -0.352 6.352 21 C -0.108 4.108 22 N -0.239 5.239 23 C -0.098 4.098 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.098 4.098 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.021 0.979 40 H -0.026 1.026 41 H 0.013 0.987 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.225 0.775 46 H 0.058 0.942 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.091 0.909 53 H 0.101 0.899 54 H 0.060 0.940 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.518 -14.032 -13.549 19.668 hybrid contribution -0.635 2.352 0.647 2.521 sum 1.884 -11.680 -12.902 17.506 Atomic orbital electron populations 1.22113 0.96329 0.98112 1.04393 1.21212 0.96065 0.95224 0.99938 1.21578 0.94840 0.96864 0.98977 1.21486 0.95294 0.96351 1.01615 1.21756 1.00612 0.97256 1.00797 1.22323 0.86790 0.97500 0.98870 1.62116 1.13066 1.39490 1.09244 1.19485 0.92509 0.85836 0.93962 1.21969 1.41346 0.99424 0.91350 0.88711 1.25769 0.95887 0.95090 1.02861 1.70091 1.47470 1.04815 1.35817 0.85789 0.78859 0.77338 0.80881 1.19407 1.21553 1.19485 1.22820 1.00290 0.97437 0.90416 1.21768 0.84366 0.93011 0.93440 0.89058 1.86606 1.19323 1.56197 1.73035 1.22947 1.00529 0.90607 0.96682 1.64779 1.46916 1.08745 1.03425 1.23255 0.95976 0.94486 0.96075 1.22474 1.01489 0.96950 0.94952 1.22395 1.00016 0.95769 0.98335 1.22977 0.95961 0.97749 0.93118 0.88873 0.95390 0.95194 0.92156 0.94085 0.90724 0.92148 0.91191 0.94994 0.91526 0.93630 0.88397 0.97911 1.02557 0.98749 0.93352 0.94679 0.92052 0.77512 0.94165 0.89504 0.90746 0.94451 0.90128 0.90811 0.90910 0.89935 0.93985 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 8.76 71.98 0.63 -5.04 16 2 C -0.09 -2.95 5.38 30.60 0.16 -2.78 16 3 C -0.10 -3.80 1.85 -10.79 -0.02 -3.82 16 4 C -0.11 -3.35 5.40 30.60 0.17 -3.19 16 5 C -0.15 -4.65 9.68 71.98 0.70 -3.96 16 6 C 0.07 2.64 3.99 86.30 0.34 2.98 16 7 N -0.52 -20.43 1.26 -900.79 -1.14 -21.57 16 8 C 0.21 10.67 4.74 85.56 0.41 11.07 16 9 C -0.50 -27.21 7.47 25.60 0.19 -27.02 16 10 H 0.10 4.94 2.80 -2.91 -0.01 4.94 16 11 C 0.00 0.04 5.46 84.65 0.46 0.50 16 12 N -0.94 -56.69 13.29 21.45 0.28 -56.41 16 13 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C 0.02 0.65 4.79 86.30 0.41 1.06 16 18 C 0.13 3.56 2.48 30.59 0.08 3.63 16 19 H 0.09 2.77 5.20 -2.39 -0.01 2.76 16 20 O -0.55 -13.98 10.76 -148.98 -1.60 -15.58 16 21 C 0.02 0.48 4.66 86.31 0.40 0.88 16 22 N -0.51 -11.14 5.34 -883.01 -4.72 -15.85 16 23 C 0.03 0.65 5.09 86.65 0.44 1.09 16 24 C -0.12 -2.03 7.06 31.80 0.22 -1.80 16 25 C -0.13 -1.88 6.93 31.47 0.22 -1.66 16 26 C 0.03 0.52 6.69 86.45 0.58 1.10 16 27 H 0.09 3.57 3.62 -2.38 -0.01 3.56 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.03 1.27 5.85 -2.39 -0.01 1.25 16 30 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.04 1.31 8.12 -2.38 -0.02 1.29 16 32 H 0.07 3.37 4.30 -2.39 -0.01 3.36 16 33 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.50 6.43 -2.39 -0.02 1.48 16 38 H 0.10 3.06 4.78 -2.39 -0.01 3.05 16 39 H 0.00 0.11 5.76 -2.39 -0.01 0.10 16 40 H -0.04 -2.47 7.70 -2.39 -0.02 -2.49 16 41 H -0.01 -0.31 7.60 -2.39 -0.02 -0.33 16 42 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.03 1.07 7.96 -2.39 -0.02 1.05 16 44 H 0.06 2.11 7.56 -2.39 -0.02 2.10 16 45 H 0.38 7.48 8.63 -74.06 -0.64 6.84 16 46 H 0.04 0.92 7.81 -2.38 -0.02 0.90 16 47 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.07 1.83 7.56 -2.39 -0.02 1.81 16 49 H 0.04 0.85 8.01 -2.39 -0.02 0.83 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 51 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 52 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.04 0.74 7.57 -2.39 -0.02 0.72 16 55 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -62.34 395.18 0.47 -61.88 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.22 Total: 27.80 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 5.40 Total: -26.95 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -5.57 Total: -93.83 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.60 Total: -15.58 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -62.34 0.47 -61.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749117986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.085 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds