Wall clock time and date at job start Tue Mar 31 2020 11:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.08998 * 109.47353 * 54.99878 * 3 2 1 5 5 C 1.50701 * 109.47160 * 175.00064 * 3 2 1 6 6 H 1.08005 * 119.99842 * 120.00299 * 5 3 2 7 7 C 1.37875 * 120.00108 * 299.99621 * 5 3 2 8 8 N 1.31515 * 119.99754 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00091 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47047 * 119.99976 * 9 7 5 12 12 H 1.48493 * 109.47438 * 240.00537 * 9 7 5 13 13 O 1.45204 * 109.46883 * 295.00189 * 3 2 1 14 14 C 1.34682 * 117.00186 * 89.99825 * 13 3 2 15 15 O 1.21439 * 120.00069 * 0.02562 * 14 13 3 16 16 C 1.48000 * 120.00202 * 179.97438 * 14 13 3 17 17 N 1.32802 * 119.73387 * 0.02562 * 16 14 13 18 18 C 1.31455 * 121.64772 * 179.70026 * 17 16 14 19 19 C 1.38660 * 120.93545 * 0.54838 * 18 17 16 20 20 C 1.38534 * 119.37482 * 359.46564 * 19 18 17 21 21 C 1.38766 * 118.47889 * 0.25420 * 20 19 18 22 22 Br 1.89099 * 120.48088 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46827 * 299.99900 * 1 2 3 25 25 H 1.09001 * 109.47469 * 59.99932 * 1 2 3 26 26 H 1.08999 * 109.47045 * 239.99644 * 2 1 3 27 27 H 1.09001 * 109.47469 * 120.00068 * 2 1 3 28 28 H 0.97002 * 119.99723 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.53290 * 180.26771 * 18 17 16 30 30 H 1.08002 * 120.31531 * 179.74932 * 19 18 17 31 31 H 1.07992 * 120.75657 * 180.27756 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.5987 1.5451 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4626 13 8 1.6558 2.0916 -1.2407 14 6 0.4686 2.7275 -1.2561 15 8 -0.2265 2.7399 -0.2603 16 6 0.0117 3.4122 -2.4860 17 7 0.7762 3.3957 -3.5718 18 6 0.4048 3.9863 -4.6859 19 6 -0.8030 4.6628 -4.7657 20 6 -1.6325 4.7055 -3.6570 21 6 -1.2182 4.0688 -2.4957 22 35 -2.3062 4.0909 -0.9492 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0618 2.9495 29 1 1.0515 3.9479 -5.5500 30 1 -1.0964 5.1479 -5.6849 31 1 -2.5800 5.2222 -3.6957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838865127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:57 Heat of formation + Delta-G solvation = -35.332628 kcal Electronic energy + Delta-G solvation = -18198.194491 eV Core-core repulsion = 15105.838866 eV Total energy + Delta-G solvation = -3092.355625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57554 -39.07445 -35.82360 -33.58270 -33.11692 -32.19294 -31.26052 -29.64278 -27.29643 -25.04979 -23.48243 -22.99265 -21.20904 -19.62999 -17.90265 -16.99390 -16.49942 -15.89165 -15.65695 -15.46269 -14.70512 -14.36182 -14.04017 -13.50702 -13.02066 -12.80464 -12.31058 -12.00141 -11.45693 -11.33647 -11.29704 -11.20594 -10.97115 -10.83390 -10.60098 -10.19407 -9.93980 -9.87694 -9.70002 -9.35370 -9.05105 -8.80687 -8.70475 -8.40417 -6.14333 -4.20413 0.38991 0.86970 1.52321 2.86291 3.26454 3.28383 3.34934 3.43189 3.78740 4.23878 4.37231 4.46682 4.63393 4.85794 5.04984 5.17881 5.36646 5.67349 5.81097 6.21555 6.27753 6.35258 6.50025 6.90697 6.99406 7.21114 7.24739 7.57900 7.66907 7.77476 7.95512 8.19695 8.62991 8.92770 9.44293 10.92622 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004878 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.924838 B = 5738.332277 C = 6514.459155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.219 3.781 4 H 0.049 0.951 5 C -0.517 4.517 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.328 6.328 14 C 0.495 3.505 15 O -0.477 6.477 16 C 0.134 3.866 17 N -0.421 5.421 18 C 0.106 3.894 19 C -0.149 4.149 20 C -0.059 4.059 21 C -0.102 4.102 22 Br 0.008 6.992 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.265 0.735 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.402 8.843 -12.237 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.555 4.555 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.243 6.243 14 C 0.336 3.664 15 O -0.365 6.365 16 C -0.005 4.005 17 N -0.133 5.133 18 C -0.055 4.055 19 C -0.170 4.170 20 C -0.087 4.087 21 C -0.185 4.185 22 Br 0.094 6.906 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.187 0.813 30 H 0.166 0.834 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.149 8.267 -11.053 18.388 hybrid contribution 0.318 0.367 -0.269 0.555 sum -11.831 8.634 -11.322 18.512 Atomic orbital electron populations 1.21855 0.98338 0.99018 1.00734 1.22018 0.92647 0.99266 1.03396 1.20778 0.95173 0.88827 0.78511 0.93314 1.21085 0.89616 1.38673 1.06167 0.91188 1.24870 0.99180 0.94811 0.95064 1.69902 1.35230 1.38027 1.09511 0.86240 0.84006 0.77848 0.78189 1.19457 1.20803 1.20735 1.86645 1.32510 1.61406 1.43763 1.20442 0.82086 0.77844 0.86014 1.90977 1.54521 1.57366 1.33643 1.20448 0.90329 0.96530 0.93221 1.67958 1.31679 1.15160 0.98460 1.23129 0.94467 0.92134 0.95751 1.22449 0.95364 0.99809 0.99388 1.21566 1.00222 0.96214 0.90685 1.23004 0.96773 1.02530 0.96201 1.96823 1.62645 1.97305 1.33870 0.94842 0.92661 0.95091 0.93944 0.87264 0.92499 0.81299 0.83402 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.15 0.32 -2.86 16 2 C -0.14 -3.42 5.49 -26.74 -0.15 -3.57 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.75 8.90 -34.44 -0.31 -15.06 16 6 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 O -0.33 -8.24 9.62 -40.44 -0.39 -8.63 16 14 C 0.50 10.95 6.39 34.73 0.22 11.17 16 15 O -0.48 -10.83 10.64 -19.22 -0.20 -11.03 16 16 C 0.13 2.42 6.75 -83.01 -0.56 1.86 16 17 N -0.42 -7.05 10.12 -9.79 -0.10 -7.15 16 18 C 0.11 1.19 11.18 -17.56 -0.20 0.99 16 19 C -0.15 -1.30 10.11 -39.32 -0.40 -1.70 16 20 C -0.06 -0.62 9.94 -39.28 -0.39 -1.01 16 21 C -0.10 -1.51 6.28 -38.95 -0.24 -1.76 16 22 Br 0.01 0.11 30.41 -68.01 -2.07 -1.95 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 25 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 26 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.11 2.97 5.95 -51.93 -0.31 2.67 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 287.62 15.07 4.33 4.33 Total: -1.00 -31.54 287.62 -7.74 -39.28 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.06 Total: -2.13 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.86 Total: -4.41 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.53 Total: -31.79 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.59 Total: -19.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: 0.11 SS G_CDS: -2.07 Total: -1.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.54 -7.74 -39.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.946 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds