Wall clock time and date at job start Tue Mar 31 2020 11:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.08998 * 109.47353 * 54.99878 * 3 2 1 5 5 C 1.50701 * 109.47160 * 175.00064 * 3 2 1 6 6 H 1.08005 * 119.99842 * 120.00299 * 5 3 2 7 7 C 1.37875 * 120.00108 * 299.99621 * 5 3 2 8 8 N 1.31515 * 119.99754 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00091 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47047 * 119.99976 * 9 7 5 12 12 H 1.48493 * 109.47438 * 240.00537 * 9 7 5 13 13 O 1.45204 * 109.46883 * 295.00189 * 3 2 1 14 14 C 1.34682 * 117.00186 * 89.99825 * 13 3 2 15 15 O 1.21439 * 120.00069 * 0.02562 * 14 13 3 16 16 C 1.48000 * 120.00202 * 179.97438 * 14 13 3 17 17 N 1.32802 * 119.73387 * 0.02562 * 16 14 13 18 18 C 1.31455 * 121.64772 * 179.70026 * 17 16 14 19 19 C 1.38660 * 120.93545 * 0.54838 * 18 17 16 20 20 C 1.38534 * 119.37482 * 359.46564 * 19 18 17 21 21 C 1.38766 * 118.47889 * 0.25420 * 20 19 18 22 22 Br 1.89099 * 120.48088 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47594 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46827 * 299.99900 * 1 2 3 25 25 H 1.09001 * 109.47469 * 59.99932 * 1 2 3 26 26 H 1.08999 * 109.47045 * 239.99644 * 2 1 3 27 27 H 1.09001 * 109.47469 * 120.00068 * 2 1 3 28 28 H 0.97002 * 119.99723 * 179.97438 * 8 7 5 29 29 H 1.08003 * 119.53290 * 180.26771 * 18 17 16 30 30 H 1.08002 * 120.31531 * 179.74932 * 19 18 17 31 31 H 1.07992 * 120.75657 * 180.27756 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8799 1.3811 10 1 6.5987 1.5451 0.1935 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5190 1.4626 13 8 1.6558 2.0916 -1.2407 14 6 0.4686 2.7275 -1.2561 15 8 -0.2265 2.7399 -0.2603 16 6 0.0117 3.4122 -2.4860 17 7 0.7762 3.3957 -3.5718 18 6 0.4048 3.9863 -4.6859 19 6 -0.8030 4.6628 -4.7657 20 6 -1.6325 4.7055 -3.6570 21 6 -1.2182 4.0688 -2.4957 22 35 -2.3062 4.0909 -0.9492 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0618 2.9495 29 1 1.0515 3.9479 -5.5500 30 1 -1.0964 5.1479 -5.6849 31 1 -2.5800 5.2222 -3.6957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838865127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:56 Heat of formation + Delta-G solvation = -55.035227 kcal Electronic energy + Delta-G solvation = -18199.048860 eV Core-core repulsion = 15105.838866 eV Total energy + Delta-G solvation = -3093.209994 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84101 -40.59787 -37.65207 -35.52083 -34.25091 -33.49378 -33.03702 -30.75257 -29.33211 -26.39126 -25.08909 -24.31301 -22.76265 -21.52143 -19.45796 -18.63213 -18.00918 -17.43654 -17.13869 -16.76534 -16.45589 -15.66177 -15.33926 -14.81443 -14.76510 -14.32907 -13.90187 -13.40118 -13.34694 -13.15900 -13.03768 -12.82956 -12.55770 -12.42186 -12.40186 -12.09858 -11.73077 -11.41002 -10.93865 -10.87381 -10.80879 -10.54620 -10.12715 -10.10240 -8.27341 -6.43567 -0.70820 -0.03288 0.43617 1.40582 1.41599 1.47809 1.55250 1.82796 2.39165 2.61410 3.01861 3.19757 3.54495 3.74912 3.85204 4.16648 4.34916 4.37363 4.39044 4.55232 4.75777 4.83563 4.88201 5.07571 5.21533 5.33520 5.40446 5.50748 5.66455 5.92389 6.09870 6.53118 6.64881 6.98159 7.27378 8.79808 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004878 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.924838 B = 5738.332277 C = 6514.459155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.225 3.775 4 H 0.011 0.989 5 C -0.549 4.549 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.269 1.269 13 O -0.346 6.346 14 C 0.486 3.514 15 O -0.495 6.495 16 C 0.092 3.908 17 N -0.464 5.464 18 C 0.101 3.899 19 C -0.109 4.109 20 C -0.054 4.054 21 C -0.106 4.106 22 Br -0.008 7.008 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.271 0.729 29 H 0.207 0.793 30 H 0.207 0.793 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 9.965 -14.933 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.029 0.971 5 C -0.586 4.586 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.194 1.194 13 O -0.262 6.262 14 C 0.328 3.672 15 O -0.384 6.384 16 C -0.045 4.045 17 N -0.176 5.176 18 C -0.060 4.060 19 C -0.129 4.129 20 C -0.081 4.081 21 C -0.189 4.189 22 Br 0.078 6.922 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.223 0.777 30 H 0.224 0.776 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.630 9.394 -13.748 20.899 hybrid contribution 0.377 0.127 0.401 0.565 sum -12.252 9.522 -13.348 20.468 Atomic orbital electron populations 1.21683 0.96134 1.00547 1.00045 1.21851 0.94554 0.97987 1.02166 1.20449 0.94603 0.89343 0.78455 0.97079 1.21321 0.90518 1.39975 1.06827 0.92163 1.25767 1.04200 0.93803 0.94248 1.70013 1.37304 1.37916 1.09853 0.85178 0.77752 0.78420 0.78314 1.19112 1.19938 1.19436 1.86620 1.34750 1.62405 1.42439 1.21315 0.80771 0.77274 0.87812 1.90941 1.54511 1.57999 1.34933 1.19916 0.92438 0.99720 0.92443 1.67806 1.32893 1.17266 0.99665 1.23893 0.96161 0.91042 0.94865 1.23082 0.92890 0.96446 1.00478 1.22114 1.01821 0.95001 0.89199 1.23163 0.95503 1.02973 0.97268 1.96796 1.62529 1.97318 1.35558 0.92036 0.93999 0.95059 0.94070 0.89272 0.91977 0.77669 0.77565 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.56 71.98 0.62 -5.22 16 2 C -0.13 -6.74 5.49 30.59 0.17 -6.57 16 3 C 0.22 12.87 2.25 29.85 0.07 12.94 16 4 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 5 C -0.55 -32.66 8.90 25.60 0.23 -32.43 16 6 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -53.31 11.29 21.45 0.24 -53.07 16 9 Si 0.98 44.26 29.54 68.60 2.03 46.29 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 O -0.35 -18.40 9.62 -55.91 -0.54 -18.94 16 14 C 0.49 22.58 6.39 70.41 0.45 23.03 16 15 O -0.50 -23.77 10.64 20.03 0.21 -23.56 16 16 C 0.09 3.36 6.75 41.87 0.28 3.64 16 17 N -0.46 -15.24 10.12 -184.90 -1.87 -17.11 16 18 C 0.10 1.92 11.18 84.85 0.95 2.87 16 19 C -0.11 -1.29 10.11 22.44 0.23 -1.07 16 20 C -0.05 -0.91 9.94 22.47 0.22 -0.69 16 21 C -0.11 -3.01 6.28 22.68 0.14 -2.87 16 22 Br -0.01 -0.24 30.41 -20.37 -0.62 -0.86 16 23 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.04 2.00 7.79 -2.39 -0.02 1.98 16 25 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 26 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.09 5.06 5.95 -2.39 -0.01 5.05 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.21 0.16 8.06 -2.91 -0.02 0.13 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -74.56 287.62 4.41 -70.15 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: 1.15 Total: 1.91 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 3.80 Total: -4.81 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -1.63 Total: -70.18 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -0.32 Total: -42.49 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.62 Total: -0.86 kcal Total: -74.56 4.41 -70.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838865127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.119 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds