Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46723 * 299.99510 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.28632 * 7 2 1 9 9 C 1.50703 * 120.00217 * 355.55841 * 7 2 1 10 10 C 1.53002 * 115.55188 * 274.99662 * 9 7 2 11 11 N 1.46505 * 109.46901 * 294.33082 * 10 9 7 12 12 S 1.65595 * 119.99977 * 159.13983 * 11 10 9 13 13 O 1.42104 * 104.27467 * 181.06980 * 12 11 10 14 14 O 1.42104 * 104.27199 * 308.91928 * 12 11 10 15 15 C 1.81395 * 104.45317 * 64.99385 * 12 11 10 16 16 C 1.50697 * 109.46997 * 180.02562 * 15 12 11 17 17 C 1.31335 * 120.00211 * 115.00363 * 16 15 12 18 18 Cl 1.73603 * 119.99734 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 120.00196 * 179.97438 * 17 16 15 20 20 C 1.53000 * 117.49884 * 129.32180 * 9 7 2 21 21 C 1.52998 * 117.49477 * 60.66227 * 9 7 2 22 22 H 0.97007 * 119.99528 * 5.00889 * 1 2 3 23 23 H 1.08999 * 109.46833 * 54.32472 * 10 9 7 24 24 H 1.08996 * 109.46914 * 174.32661 * 10 9 7 25 25 H 0.97006 * 119.99534 * 339.12985 * 11 10 9 26 26 H 1.09004 * 109.47205 * 300.00032 * 15 12 11 27 27 H 1.09001 * 109.46823 * 60.00233 * 15 12 11 28 28 H 1.08001 * 120.00147 * 294.99450 * 16 15 12 29 29 H 1.09001 * 117.49774 * 0.02562 * 20 9 7 30 30 H 1.08993 * 117.49727 * 145.02457 * 20 9 7 31 31 H 1.09004 * 117.50046 * 214.98315 * 21 9 7 32 32 H 1.09003 * 117.50238 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0763 9 6 1.2543 -2.4972 0.1022 10 6 0.9141 -2.9538 1.5223 11 7 2.1506 -3.2589 2.2465 12 16 2.1582 -3.2730 3.9024 13 8 3.5041 -3.5752 4.2440 14 8 1.5715 -2.0309 4.2660 15 6 1.0637 -4.6490 4.3485 16 6 0.9879 -4.7643 5.8492 17 6 -0.1495 -4.5450 6.4681 18 17 -1.5655 -4.1215 5.5574 19 17 -0.2370 -4.6785 8.1967 20 6 1.5759 -3.5799 -0.9300 21 6 0.2484 -2.8213 -1.0041 22 1 -0.4850 0.8369 -0.0734 23 1 0.3763 -2.1597 2.0402 24 1 0.2898 -3.8461 1.4772 25 1 2.9647 -3.4527 1.7560 26 1 0.0669 -4.4650 3.9478 27 1 1.4574 -5.5761 3.9319 28 1 1.8689 -5.0275 6.4158 29 1 2.3304 -3.3497 -1.6823 30 1 1.5448 -4.6173 -0.5974 31 1 -0.6556 -3.3602 -0.7203 32 1 0.1288 -2.0919 -1.8052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882149834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = -45.205028 kcal Electronic energy + Delta-G solvation = -19717.362709 eV Core-core repulsion = 16279.326692 eV Total energy + Delta-G solvation = -3438.036017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 313.009 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.85544 -37.14627 -36.88165 -36.73165 -35.63231 -34.57189 -33.37622 -31.90610 -27.89189 -26.01000 -24.89416 -21.22156 -20.98653 -19.39669 -18.97327 -17.54323 -17.22682 -16.55111 -15.90125 -15.48551 -15.31562 -14.60542 -14.29110 -13.88219 -13.54220 -13.26763 -13.05722 -12.57932 -12.28483 -12.08689 -11.80635 -11.75470 -11.64846 -11.61460 -11.37685 -11.26925 -11.03460 -10.94152 -10.89564 -10.48546 -10.24774 -9.55617 -9.38794 -9.13406 -8.65308 -8.44841 -8.18033 -6.04089 -4.11331 0.29406 0.98811 1.22494 2.02681 3.11631 3.31272 3.41337 3.43510 3.96895 4.23609 4.41725 4.46436 4.85979 4.99142 5.24280 5.25529 5.36102 5.54070 5.80985 6.16787 6.19016 6.29944 6.44539 6.66536 6.96253 7.05500 7.35680 7.53580 7.62431 7.87409 8.37061 8.89363 9.55700 11.03685 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.004125 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.158839 B = 6785.725217 C = 6850.477746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.154 3.846 11 N -1.092 6.092 12 S 2.612 3.388 13 O -0.964 6.964 14 O -0.935 6.935 15 C -0.621 4.621 16 C -0.116 4.116 17 C -0.025 4.025 18 Cl -0.022 7.022 19 Cl -0.030 7.030 20 C -0.212 4.212 21 C -0.145 4.145 22 H 0.261 0.739 23 H 0.084 0.916 24 H 0.033 0.967 25 H 0.417 0.583 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -12.278 10.825 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.032 3.968 10 C 0.028 3.972 11 N -0.853 5.853 12 S 2.700 3.300 13 O -0.954 6.954 14 O -0.925 6.925 15 C -0.745 4.745 16 C -0.138 4.138 17 C -0.080 4.080 18 Cl 0.006 6.994 19 Cl -0.002 7.002 20 C -0.249 4.249 21 C -0.183 4.183 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.253 0.747 26 H 0.163 0.837 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.582 -11.508 11.634 16.440 hybrid contribution 0.040 0.226 -0.379 0.443 sum -1.542 -11.282 11.254 16.010 Atomic orbital electron populations 1.69971 1.05842 1.26776 1.48819 1.24954 0.94856 0.98983 0.94265 0.86599 0.80337 0.83881 0.77621 1.19651 1.21099 1.20721 1.20381 0.92749 0.88446 1.51481 0.92116 1.18934 0.99070 0.93474 0.85372 1.21048 0.82953 0.97411 0.95802 1.55175 1.19857 1.86276 1.23962 1.05065 0.74785 0.76064 0.74073 1.93569 1.32485 1.86089 1.83257 1.93646 1.79541 1.36834 1.82485 1.30150 1.21071 1.23784 0.99481 1.22471 0.97094 1.00239 0.93991 1.24197 0.91115 1.06958 0.85733 1.98446 1.39049 1.91306 1.70560 1.98430 1.98075 1.96237 1.07435 1.23030 1.00698 0.95483 1.05682 1.22502 0.90674 1.01398 1.03741 0.92962 0.89790 0.94853 0.74748 0.83684 0.82719 0.82086 0.90326 0.91671 0.91880 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.20 12.65 55.43 0.70 -23.49 16 2 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.49 -12.83 8.75 -34.44 -0.30 -13.13 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.03 0.76 1.49 -155.66 -0.23 0.52 16 10 C 0.15 3.03 6.00 -4.04 -0.02 3.01 16 11 N -1.09 -18.84 5.77 -10.61 -0.06 -18.90 16 12 S 2.61 41.86 5.44 -107.50 -0.58 41.27 16 13 O -0.96 -16.90 18.08 -57.54 -1.04 -17.94 16 14 O -0.94 -19.01 17.44 -57.54 -1.00 -20.01 16 15 C -0.62 -7.03 6.37 36.00 0.23 -6.80 16 16 C -0.12 -1.26 9.26 -36.11 -0.33 -1.59 16 17 C -0.02 -0.28 6.97 28.93 0.20 -0.08 16 18 Cl -0.02 -0.27 26.92 -51.86 -1.40 -1.66 16 19 Cl -0.03 -0.30 29.06 -51.86 -1.51 -1.81 16 20 C -0.21 -4.14 9.96 -26.69 -0.27 -4.41 16 21 C -0.14 -3.13 9.14 -26.69 -0.24 -3.37 16 22 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 23 H 0.08 1.89 7.60 -51.93 -0.39 1.49 16 24 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 25 H 0.42 6.84 8.66 -34.47 -0.30 6.54 16 26 H 0.15 1.65 6.01 -51.92 -0.31 1.34 16 27 H 0.15 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -31.28 324.84 -9.59 -40.87 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.51 Total: 4.49 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -1.07 Total: -23.98 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.64 Total: -42.39 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.04 Total: -37.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 41.86 SS G_CDS: -0.58 Total: 41.27 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -2.90 Total: -3.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.28 -9.59 -40.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882149834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.332 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds