Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46723 * 299.99510 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.28632 * 7 2 1 9 9 C 1.50703 * 120.00217 * 355.55841 * 7 2 1 10 10 C 1.53002 * 115.55188 * 274.99662 * 9 7 2 11 11 N 1.46505 * 109.46901 * 294.33082 * 10 9 7 12 12 S 1.65595 * 119.99977 * 159.13983 * 11 10 9 13 13 O 1.42104 * 104.27467 * 181.06980 * 12 11 10 14 14 O 1.42104 * 104.27199 * 308.91928 * 12 11 10 15 15 C 1.81395 * 104.45317 * 64.99385 * 12 11 10 16 16 C 1.50697 * 109.46997 * 180.02562 * 15 12 11 17 17 C 1.31335 * 120.00211 * 115.00363 * 16 15 12 18 18 Cl 1.73603 * 119.99734 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 120.00196 * 179.97438 * 17 16 15 20 20 C 1.53000 * 117.49884 * 129.32180 * 9 7 2 21 21 C 1.52998 * 117.49477 * 60.66227 * 9 7 2 22 22 H 0.97007 * 119.99528 * 5.00889 * 1 2 3 23 23 H 1.08999 * 109.46833 * 54.32472 * 10 9 7 24 24 H 1.08996 * 109.46914 * 174.32661 * 10 9 7 25 25 H 0.97006 * 119.99534 * 339.12985 * 11 10 9 26 26 H 1.09004 * 109.47205 * 300.00032 * 15 12 11 27 27 H 1.09001 * 109.46823 * 60.00233 * 15 12 11 28 28 H 1.08001 * 120.00147 * 294.99450 * 16 15 12 29 29 H 1.09001 * 117.49774 * 0.02562 * 20 9 7 30 30 H 1.08993 * 117.49727 * 145.02457 * 20 9 7 31 31 H 1.09004 * 117.50046 * 214.98315 * 21 9 7 32 32 H 1.09003 * 117.50238 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0763 9 6 1.2543 -2.4972 0.1022 10 6 0.9141 -2.9538 1.5223 11 7 2.1506 -3.2589 2.2465 12 16 2.1582 -3.2730 3.9024 13 8 3.5041 -3.5752 4.2440 14 8 1.5715 -2.0309 4.2660 15 6 1.0637 -4.6490 4.3485 16 6 0.9879 -4.7643 5.8492 17 6 -0.1495 -4.5450 6.4681 18 17 -1.5655 -4.1215 5.5574 19 17 -0.2370 -4.6785 8.1967 20 6 1.5759 -3.5799 -0.9300 21 6 0.2484 -2.8213 -1.0041 22 1 -0.4850 0.8369 -0.0734 23 1 0.3763 -2.1597 2.0402 24 1 0.2898 -3.8461 1.4772 25 1 2.9647 -3.4527 1.7560 26 1 0.0669 -4.4650 3.9478 27 1 1.4574 -5.5761 3.9319 28 1 1.8689 -5.0275 6.4158 29 1 2.3304 -3.3497 -1.6823 30 1 1.5448 -4.6173 -0.5974 31 1 -0.6556 -3.3602 -0.7203 32 1 0.1288 -2.0919 -1.8052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882149834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = -66.844565 kcal Electronic energy + Delta-G solvation = -19718.301070 eV Core-core repulsion = 16279.326692 eV Total energy + Delta-G solvation = -3438.974378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 313.009 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.77125 -38.72357 -38.12160 -37.74179 -37.00912 -35.47542 -34.86080 -33.86872 -28.84882 -27.81578 -26.59532 -22.82441 -21.94144 -21.12535 -20.24063 -18.79226 -18.39122 -18.09201 -17.22883 -16.74834 -16.59536 -16.37725 -15.75951 -15.25892 -14.81284 -14.70057 -14.03085 -13.93938 -13.71023 -13.44314 -13.19418 -13.06997 -12.96070 -12.87993 -12.82330 -12.62145 -12.46232 -12.38769 -12.33975 -12.04879 -11.91516 -11.30065 -10.97591 -10.36704 -10.33558 -10.08226 -9.84258 -8.07514 -6.16829 -0.91510 0.13174 0.34055 1.14174 1.37028 1.43483 1.49904 1.83458 2.43654 2.79044 3.21392 3.22312 3.46415 3.59743 3.81814 4.16428 4.26729 4.48847 4.62034 4.64697 4.68375 4.73309 4.79646 5.11725 5.37056 5.39043 5.71821 5.81064 5.86039 6.28180 6.45774 6.89119 7.51107 8.99394 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.004125 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.158839 B = 6785.725217 C = 6850.477746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.027 3.973 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.290 1.290 7 C -0.500 4.500 8 H 0.050 0.950 9 C 0.000 4.000 10 C 0.163 3.837 11 N -1.096 6.096 12 S 2.613 3.387 13 O -0.983 6.983 14 O -0.990 6.990 15 C -0.592 4.592 16 C -0.121 4.121 17 C -0.031 4.031 18 Cl -0.034 7.034 19 Cl -0.018 7.018 20 C -0.179 4.179 21 C -0.153 4.153 22 H 0.258 0.742 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.420 0.580 26 H 0.150 0.850 27 H 0.200 0.800 28 H 0.188 0.812 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -14.682 11.408 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.538 4.538 8 H 0.069 0.931 9 C -0.002 4.002 10 C 0.036 3.964 11 N -0.856 5.856 12 S 2.708 3.292 13 O -0.973 6.973 14 O -0.980 6.980 15 C -0.722 4.722 16 C -0.143 4.143 17 C -0.087 4.087 18 Cl -0.006 7.006 19 Cl 0.010 6.990 20 C -0.217 4.217 21 C -0.192 4.192 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.093 0.907 25 H 0.256 0.744 26 H 0.168 0.832 27 H 0.217 0.783 28 H 0.205 0.795 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.268 -13.867 12.178 18.499 hybrid contribution -0.034 0.883 -0.487 1.009 sum -1.302 -12.984 11.690 17.520 Atomic orbital electron populations 1.70045 1.06598 1.26935 1.50462 1.25531 0.95546 1.01383 0.94864 0.85926 0.79599 0.81415 0.77317 1.19278 1.20344 1.21622 1.20713 0.92606 0.90402 1.50101 0.93147 1.19056 1.00102 0.93531 0.87467 1.20779 0.83964 0.98003 0.93623 1.55044 1.19407 1.86828 1.24287 1.04700 0.74769 0.76400 0.73286 1.93541 1.34146 1.86494 1.83150 1.93586 1.80230 1.41254 1.82932 1.29845 1.19491 1.22440 1.00393 1.22778 0.97882 0.99942 0.93685 1.24359 0.91017 1.06888 0.86427 1.98447 1.39788 1.91431 1.70905 1.98437 1.98029 1.96148 1.06353 1.23036 0.98656 0.96546 1.03419 1.22421 0.92394 1.01703 1.02638 0.93289 0.93419 0.90730 0.74405 0.83246 0.78295 0.79533 0.90849 0.87799 0.89976 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.87 12.65 21.45 0.27 -50.59 16 2 C 0.03 1.49 5.43 84.66 0.46 1.95 16 3 Si 0.93 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.50 -26.26 8.75 25.60 0.22 -26.04 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.64 16 9 C 0.00 0.01 1.49 -52.93 -0.08 -0.07 16 10 C 0.16 6.20 6.00 86.38 0.52 6.72 16 11 N -1.10 -36.20 5.77 -187.48 -1.08 -37.28 16 12 S 2.61 80.35 5.44 -56.49 -0.31 80.04 16 13 O -0.98 -33.10 18.08 -127.65 -2.31 -35.41 16 14 O -0.99 -40.67 17.44 -127.65 -2.23 -42.90 16 15 C -0.59 -11.38 6.37 71.24 0.45 -10.93 16 16 C -0.12 -2.24 9.26 25.32 0.23 -2.01 16 17 C -0.03 -0.63 6.97 67.45 0.47 -0.16 16 18 Cl -0.03 -0.77 26.92 -2.72 -0.07 -0.84 16 19 Cl -0.02 -0.33 29.06 -2.72 -0.08 -0.41 16 20 C -0.18 -6.56 9.96 30.62 0.30 -6.26 16 21 C -0.15 -6.46 9.14 30.62 0.28 -6.18 16 22 H 0.26 14.07 8.32 -92.70 -0.77 13.30 16 23 H 0.05 2.16 7.60 -2.39 -0.02 2.14 16 24 H 0.07 2.21 8.09 -2.39 -0.02 2.19 16 25 H 0.42 13.15 8.66 -96.74 -0.84 12.31 16 26 H 0.15 2.92 6.01 -2.39 -0.01 2.91 16 27 H 0.20 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.19 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -69.14 324.84 -0.59 -69.73 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.32 Total: 14.22 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 2.87 Total: -42.97 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -0.81 Total: -87.88 kcal Atomic # 8 Polarization: -73.77 SS G_CDS: -4.53 Total: -78.31 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 80.35 SS G_CDS: -0.31 Total: 80.04 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.15 Total: -1.25 kcal Total: -69.14 -0.59 -69.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882149834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.886 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds