Wall clock time and date at job start Tue Mar 31 2020 10:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00037 * 2 1 4 4 C 1.52998 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47196 * 175.00251 * 4 3 2 6 6 N 1.46896 * 109.47560 * 295.00434 * 4 3 2 7 7 C 1.46898 * 110.99829 * 275.00168 * 6 4 3 8 8 C 1.53044 * 109.45886 * 275.06335 * 7 6 4 9 9 C 1.53191 * 109.31242 * 178.61456 * 8 7 6 10 10 N 1.46922 * 108.77642 * 54.63646 * 9 8 7 11 11 C 1.36940 * 120.63040 * 126.41297 * 10 9 8 12 12 H 1.08000 * 119.99838 * 332.60527 * 11 10 9 13 13 C 1.38807 * 120.00167 * 152.60695 * 11 10 9 14 14 N 1.31624 * 119.99890 * 159.33999 * 13 11 10 15 15 Si 1.86798 * 119.99941 * 339.34630 * 13 11 10 16 16 H 1.48500 * 109.47198 * 92.94201 * 15 13 11 17 17 H 1.48505 * 109.46984 * 212.94002 * 15 13 11 18 18 H 1.48494 * 109.47153 * 332.93947 * 15 13 11 19 19 C 1.46924 * 118.74162 * 306.39111 * 10 9 8 20 20 C 1.53043 * 109.46158 * 155.00060 * 7 6 4 21 21 C 1.53002 * 109.46871 * 55.00313 * 4 3 2 22 22 H 1.08995 * 109.52211 * 299.87342 * 21 4 3 23 23 C 1.53183 * 109.52236 * 59.99852 * 21 4 3 24 24 C 1.53174 * 109.03586 * 176.94816 * 23 21 4 25 25 C 1.53092 * 109.16350 * 303.02279 * 24 23 21 26 26 O 1.42903 * 109.41757 * 57.60772 * 25 24 23 27 27 C 1.42901 * 114.09509 * 298.83959 * 26 25 24 28 28 H 1.09006 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47053 * 299.99529 * 1 2 3 30 30 H 1.09000 * 109.47280 * 60.00123 * 1 2 3 31 31 H 1.09004 * 109.47003 * 60.00054 * 3 2 1 32 32 H 1.08993 * 109.47086 * 300.00568 * 3 2 1 33 33 H 1.00905 * 110.99809 * 38.95030 * 6 4 3 34 34 H 1.08997 * 109.46377 * 35.02079 * 7 6 4 35 35 H 1.08997 * 109.49630 * 298.57001 * 8 7 6 36 36 H 1.09001 * 109.49653 * 58.66500 * 8 7 6 37 37 H 1.09000 * 109.58661 * 294.84303 * 9 8 7 38 38 H 1.09006 * 109.70317 * 174.49313 * 9 8 7 39 39 H 0.97000 * 119.99622 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.58516 * 293.82617 * 19 10 9 41 41 H 1.08998 * 109.70527 * 173.46802 * 19 10 9 42 42 H 1.09006 * 109.49512 * 301.32721 * 20 7 6 43 43 H 1.08997 * 109.50138 * 61.39902 * 20 7 6 44 44 H 1.08996 * 109.53951 * 57.08347 * 23 21 4 45 45 H 1.09003 * 109.61246 * 296.85999 * 23 21 4 46 46 H 1.08995 * 109.52461 * 183.11429 * 24 23 21 47 47 H 1.09006 * 109.57642 * 62.95398 * 24 23 21 48 48 H 1.09003 * 109.47906 * 297.62177 * 25 24 23 49 49 H 1.09006 * 109.49096 * 177.59999 * 25 24 23 50 50 H 1.09002 * 109.47878 * 181.13814 * 27 26 25 51 51 H 1.08992 * 109.48760 * 301.17736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9770 0.5627 1.2560 7 6 4.1190 1.5663 2.3193 8 6 5.5028 2.2135 2.2279 9 6 5.6345 3.2835 3.3162 10 7 5.3393 2.6718 4.6191 11 6 6.2270 2.7771 5.6564 12 1 7.2815 2.8945 5.4549 13 6 5.7715 2.7327 6.9669 14 7 6.6010 2.4264 7.9419 15 14 3.9814 3.1077 7.3467 16 1 3.2031 1.8430 7.3615 17 1 3.8843 3.7642 8.6752 18 1 3.4338 4.0138 6.3055 19 6 4.0734 1.9455 4.7879 20 6 3.9592 0.8904 3.6831 21 6 3.9790 0.3194 -1.1807 22 1 3.5382 -0.6733 -1.0908 23 6 3.5192 0.9670 -2.4906 24 6 4.0341 0.1332 -3.6678 25 6 5.5584 0.0237 -3.5775 26 8 5.9194 -0.5580 -2.3231 27 6 5.5055 0.2029 -1.1865 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.3466 -0.1739 1.5359 34 1 3.3519 2.3316 2.2011 35 1 6.2703 1.4529 2.3707 36 1 5.6248 2.6746 1.2478 37 1 4.9277 4.0904 3.1228 38 1 6.6498 3.6804 3.3205 39 1 6.2826 2.3950 8.8576 40 1 3.2391 2.6433 4.7144 41 1 4.0568 1.4575 5.7624 42 1 2.9824 0.4098 3.7387 43 1 4.7409 0.1419 3.8120 44 1 3.9197 1.9785 -2.5574 45 1 2.4301 1.0034 -2.5182 46 1 3.7585 0.6168 -4.6049 47 1 3.5945 -0.8636 -3.6293 48 1 5.9996 1.0172 -3.6579 49 1 5.9267 -0.6043 -4.3888 50 1 5.8353 -0.2962 -0.2753 51 1 5.9459 1.1986 -1.2356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883187607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:28 Heat of formation + Delta-G solvation = -76.950658 kcal Electronic energy + Delta-G solvation = -28117.042643 eV Core-core repulsion = 24437.651886 eV Total energy + Delta-G solvation = -3679.390757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.98624 -38.51548 -37.77376 -35.70372 -33.86297 -32.46749 -31.34897 -30.34066 -29.69476 -28.20264 -26.27134 -25.30189 -24.33862 -23.70106 -22.83857 -21.65716 -20.86204 -20.03757 -19.27839 -16.97686 -16.62385 -16.44994 -16.23672 -15.83129 -15.51680 -15.37768 -14.83066 -14.75030 -14.57315 -14.15026 -14.00584 -13.73458 -13.40023 -13.10203 -13.00134 -12.64186 -12.53273 -12.43388 -12.12422 -11.97031 -11.80100 -11.64294 -11.54576 -11.30590 -10.99639 -10.93969 -10.76869 -10.64277 -10.42135 -10.30851 -10.17389 -9.90653 -9.89354 -9.66710 -9.48283 -9.39018 -8.60801 -8.22778 -6.95243 -5.92596 -3.27756 3.32077 3.48223 3.49569 3.51185 3.85891 4.20343 4.53933 4.54459 4.67033 4.71424 4.81148 4.91602 4.97817 5.00625 5.09039 5.13147 5.16364 5.22675 5.30287 5.33490 5.38840 5.40351 5.41483 5.45102 5.52463 5.61269 5.66615 5.72097 5.78960 5.87918 5.88305 5.92416 6.11468 6.17601 6.22325 6.28259 6.36397 6.39416 6.44369 6.63590 6.68180 6.79566 6.85979 7.01361 7.19822 7.30470 7.58688 7.99394 8.35854 8.97124 9.74816 10.12990 11.23631 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.003557 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.258989 B = 7870.978659 C = 8935.032080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.029 3.971 4 C 0.099 3.901 5 H 0.089 0.911 6 N -0.678 5.678 7 C 0.096 3.904 8 C -0.119 4.119 9 C 0.148 3.852 10 N -0.605 5.605 11 C -0.257 4.257 12 H 0.086 0.914 13 C 0.022 3.978 14 N -0.909 5.909 15 Si 0.883 3.117 16 H -0.289 1.289 17 H -0.304 1.304 18 H -0.272 1.272 19 C 0.129 3.871 20 C -0.134 4.134 21 C -0.102 4.102 22 H 0.087 0.913 23 C -0.118 4.118 24 C -0.153 4.153 25 C 0.059 3.941 26 O -0.385 6.385 27 C 0.074 3.926 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.348 0.652 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.017 0.983 38 H 0.064 0.936 39 H 0.262 0.738 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -3.322 -23.122 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.049 4.049 4 C -0.011 4.011 5 H 0.107 0.893 6 N -0.309 5.309 7 C -0.013 4.013 8 C -0.159 4.159 9 C 0.021 3.979 10 N -0.329 5.329 11 C -0.386 4.386 12 H 0.103 0.897 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.713 3.287 16 H -0.217 1.217 17 H -0.232 1.232 18 H -0.197 1.197 19 C 0.003 3.997 20 C -0.173 4.173 21 C -0.122 4.122 22 H 0.106 0.894 23 C -0.156 4.156 24 C -0.191 4.191 25 C -0.018 4.018 26 O -0.303 6.303 27 C -0.002 4.002 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.168 0.832 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.106 0.894 50 H 0.128 0.872 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.672 -3.655 -23.073 25.284 hybrid contribution -2.567 0.988 0.522 2.800 sum -12.239 -2.667 -22.551 25.796 Atomic orbital electron populations 1.22726 0.81276 1.02677 0.99773 1.87870 1.19391 1.27487 1.95313 1.23333 0.96164 0.85137 1.00301 1.21652 0.89839 0.98480 0.91171 0.89298 1.60599 1.54323 1.13134 1.02827 1.21459 0.97143 0.92555 0.90176 1.22027 0.96482 0.99312 0.98038 1.20942 0.99202 0.92656 0.85055 1.44348 1.19346 1.59677 1.09484 1.18942 0.89701 1.45815 0.84104 0.89667 1.25277 0.97120 0.99741 0.95508 1.69843 1.35201 1.50117 1.00045 0.86950 0.86866 0.78196 0.76650 1.21702 1.23207 1.19746 1.21283 0.88537 0.92433 0.97434 1.22205 1.00738 0.99642 0.94740 1.21620 0.97096 1.00709 0.92740 0.89436 1.21673 1.00842 0.98784 0.94328 1.22154 0.97113 1.01231 0.98566 1.22531 0.93971 0.98338 0.86979 1.87960 1.78836 1.49667 1.13867 1.22603 0.92820 0.95985 0.88837 0.89630 0.94186 0.94367 0.93308 0.93036 0.83220 0.94815 0.91126 0.93261 0.96487 0.91781 0.92815 0.96159 0.90863 0.93226 0.90715 0.92142 0.91684 0.91331 0.91126 0.93522 0.89399 0.87209 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.12 9.19 -35.23 -0.32 -4.44 16 3 C 0.03 0.30 5.08 37.16 0.19 0.48 16 4 C 0.10 1.08 1.81 -67.72 -0.12 0.96 16 5 H 0.09 0.98 7.10 -51.93 -0.37 0.61 16 6 N -0.68 -8.76 5.36 -99.70 -0.53 -9.29 16 7 C 0.10 1.46 2.25 -67.67 -0.15 1.30 16 8 C -0.12 -1.94 5.57 -26.61 -0.15 -2.09 16 9 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 10 N -0.60 -14.40 2.77 -172.32 -0.48 -14.88 16 11 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 12 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 13 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 14 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 15 Si 0.88 22.55 24.35 -169.99 -4.14 18.41 16 16 H -0.29 -7.13 6.62 56.52 0.37 -6.75 16 17 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 18 H -0.27 -6.83 6.63 56.52 0.37 -6.46 16 19 C 0.13 2.82 4.20 -3.71 -0.02 2.81 16 20 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 21 C -0.10 -1.08 1.96 -90.48 -0.18 -1.25 16 22 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 23 C -0.12 -1.04 4.86 -26.55 -0.13 -1.17 16 24 C -0.15 -1.26 6.14 -26.59 -0.16 -1.42 16 25 C 0.06 0.54 6.84 37.20 0.25 0.80 16 26 O -0.38 -4.78 10.77 -35.23 -0.38 -5.16 16 27 C 0.07 0.87 5.94 37.21 0.22 1.09 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.53 7.37 -51.93 -0.38 0.15 16 32 H 0.05 0.46 6.79 -51.93 -0.35 0.11 16 33 H 0.35 4.61 7.54 -39.29 -0.30 4.32 16 34 H 0.03 0.52 7.10 -51.93 -0.37 0.15 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.70 7.41 -51.93 -0.38 0.31 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.02 0.44 7.08 -51.93 -0.37 0.08 16 41 H 0.07 1.77 4.50 -51.93 -0.23 1.53 16 42 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.55 6.74 -51.93 -0.35 0.20 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.11 1.45 7.70 -51.93 -0.40 1.05 16 51 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -30.77 376.55 -8.36 -39.12 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.41 Total: 1.49 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 0.46 Total: -3.58 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.24 Total: -51.50 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.70 Total: -9.60 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.77 -8.36 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883187607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.827 kcal (2) G-P(sol) polarization free energy of solvation -30.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds