Wall clock time and date at job start Tue Mar 31 2020 10:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00037 * 2 1 4 4 C 1.52998 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47196 * 175.00251 * 4 3 2 6 6 N 1.46896 * 109.47560 * 295.00434 * 4 3 2 7 7 C 1.46898 * 110.99829 * 275.00168 * 6 4 3 8 8 C 1.53044 * 109.45886 * 275.06335 * 7 6 4 9 9 C 1.53191 * 109.31242 * 178.61456 * 8 7 6 10 10 N 1.46922 * 108.77642 * 54.63646 * 9 8 7 11 11 C 1.36940 * 120.63040 * 126.41297 * 10 9 8 12 12 H 1.08000 * 119.99838 * 332.60527 * 11 10 9 13 13 C 1.38807 * 120.00167 * 152.60695 * 11 10 9 14 14 N 1.31624 * 119.99890 * 159.33999 * 13 11 10 15 15 Si 1.86798 * 119.99941 * 339.34630 * 13 11 10 16 16 H 1.48500 * 109.47198 * 92.94201 * 15 13 11 17 17 H 1.48505 * 109.46984 * 212.94002 * 15 13 11 18 18 H 1.48494 * 109.47153 * 332.93947 * 15 13 11 19 19 C 1.46924 * 118.74162 * 306.39111 * 10 9 8 20 20 C 1.53043 * 109.46158 * 155.00060 * 7 6 4 21 21 C 1.53002 * 109.46871 * 55.00313 * 4 3 2 22 22 H 1.08995 * 109.52211 * 299.87342 * 21 4 3 23 23 C 1.53183 * 109.52236 * 59.99852 * 21 4 3 24 24 C 1.53174 * 109.03586 * 176.94816 * 23 21 4 25 25 C 1.53092 * 109.16350 * 303.02279 * 24 23 21 26 26 O 1.42903 * 109.41757 * 57.60772 * 25 24 23 27 27 C 1.42901 * 114.09509 * 298.83959 * 26 25 24 28 28 H 1.09006 * 109.46798 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47053 * 299.99529 * 1 2 3 30 30 H 1.09000 * 109.47280 * 60.00123 * 1 2 3 31 31 H 1.09004 * 109.47003 * 60.00054 * 3 2 1 32 32 H 1.08993 * 109.47086 * 300.00568 * 3 2 1 33 33 H 1.00905 * 110.99809 * 38.95030 * 6 4 3 34 34 H 1.08997 * 109.46377 * 35.02079 * 7 6 4 35 35 H 1.08997 * 109.49630 * 298.57001 * 8 7 6 36 36 H 1.09001 * 109.49653 * 58.66500 * 8 7 6 37 37 H 1.09000 * 109.58661 * 294.84303 * 9 8 7 38 38 H 1.09006 * 109.70317 * 174.49313 * 9 8 7 39 39 H 0.97000 * 119.99622 * 180.02562 * 14 13 11 40 40 H 1.09006 * 109.58516 * 293.82617 * 19 10 9 41 41 H 1.08998 * 109.70527 * 173.46802 * 19 10 9 42 42 H 1.09006 * 109.49512 * 301.32721 * 20 7 6 43 43 H 1.08997 * 109.50138 * 61.39902 * 20 7 6 44 44 H 1.08996 * 109.53951 * 57.08347 * 23 21 4 45 45 H 1.09003 * 109.61246 * 296.85999 * 23 21 4 46 46 H 1.08995 * 109.52461 * 183.11429 * 24 23 21 47 47 H 1.09006 * 109.57642 * 62.95398 * 24 23 21 48 48 H 1.09003 * 109.47906 * 297.62177 * 25 24 23 49 49 H 1.09006 * 109.49096 * 177.59999 * 25 24 23 50 50 H 1.09002 * 109.47878 * 181.13814 * 27 26 25 51 51 H 1.08992 * 109.48760 * 301.17736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9785 2.1765 -0.0889 6 7 3.9770 0.5627 1.2560 7 6 4.1190 1.5663 2.3193 8 6 5.5028 2.2135 2.2279 9 6 5.6345 3.2835 3.3162 10 7 5.3393 2.6718 4.6191 11 6 6.2270 2.7771 5.6564 12 1 7.2815 2.8945 5.4549 13 6 5.7715 2.7327 6.9669 14 7 6.6010 2.4264 7.9419 15 14 3.9814 3.1077 7.3467 16 1 3.2031 1.8430 7.3615 17 1 3.8843 3.7642 8.6752 18 1 3.4338 4.0138 6.3055 19 6 4.0734 1.9455 4.7879 20 6 3.9592 0.8904 3.6831 21 6 3.9790 0.3194 -1.1807 22 1 3.5382 -0.6733 -1.0908 23 6 3.5192 0.9670 -2.4906 24 6 4.0341 0.1332 -3.6678 25 6 5.5584 0.0237 -3.5775 26 8 5.9194 -0.5580 -2.3231 27 6 5.5055 0.2029 -1.1865 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.3466 -0.1739 1.5359 34 1 3.3519 2.3316 2.2011 35 1 6.2703 1.4529 2.3707 36 1 5.6248 2.6746 1.2478 37 1 4.9277 4.0904 3.1228 38 1 6.6498 3.6804 3.3205 39 1 6.2826 2.3950 8.8576 40 1 3.2391 2.6433 4.7144 41 1 4.0568 1.4575 5.7624 42 1 2.9824 0.4098 3.7387 43 1 4.7409 0.1419 3.8120 44 1 3.9197 1.9785 -2.5574 45 1 2.4301 1.0034 -2.5182 46 1 3.7585 0.6168 -4.6049 47 1 3.5945 -0.8636 -3.6293 48 1 5.9996 1.0172 -3.6579 49 1 5.9267 -0.6043 -4.3888 50 1 5.8353 -0.2962 -0.2753 51 1 5.9459 1.1986 -1.2356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883187607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:27 Heat of formation + Delta-G solvation = -98.547376 kcal Electronic energy + Delta-G solvation = -28117.979147 eV Core-core repulsion = 24437.651886 eV Total energy + Delta-G solvation = -3680.327261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.86841 -39.66688 -38.82575 -36.86557 -35.06892 -33.93291 -32.73024 -31.90734 -30.88906 -29.19613 -27.04469 -26.42413 -25.74410 -24.60319 -24.29146 -23.20611 -21.79441 -20.95352 -20.68192 -18.80330 -17.62460 -17.33089 -17.13086 -17.03513 -16.58616 -16.39724 -15.93670 -15.85078 -15.71920 -15.45894 -15.31330 -14.98342 -14.73186 -14.42892 -14.13104 -14.02601 -13.73635 -13.45594 -13.40960 -13.18558 -13.08520 -12.63863 -12.52347 -12.41323 -12.32141 -12.16086 -12.04106 -11.95539 -11.71606 -11.61231 -11.61068 -11.28205 -11.15271 -11.08447 -10.69064 -10.60469 -10.30106 -9.25249 -8.93487 -8.16421 -5.47755 1.28657 1.39631 1.49191 2.41374 2.75515 3.05273 3.06391 3.20558 3.39814 3.74341 3.87883 3.93153 3.99108 4.05166 4.09779 4.17930 4.32202 4.34985 4.37660 4.41118 4.45157 4.52497 4.54087 4.55268 4.57461 4.65991 4.70651 4.72360 4.80567 4.85363 4.89858 4.90015 4.97600 4.98325 5.02678 5.08284 5.14843 5.19678 5.20142 5.29756 5.38481 5.51567 5.58131 5.87628 6.10996 6.13646 6.27857 6.39760 6.52836 6.92682 7.63346 8.03672 9.03827 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.003557 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.258989 B = 7870.978659 C = 8935.032080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.033 3.967 4 C 0.101 3.899 5 H 0.095 0.905 6 N -0.678 5.678 7 C 0.108 3.892 8 C -0.107 4.107 9 C 0.143 3.857 10 N -0.620 5.620 11 C -0.248 4.248 12 H 0.050 0.950 13 C -0.037 4.037 14 N -0.959 5.959 15 Si 0.949 3.051 16 H -0.275 1.275 17 H -0.311 1.311 18 H -0.260 1.260 19 C 0.124 3.876 20 C -0.125 4.125 21 C -0.091 4.091 22 H 0.069 0.931 23 C -0.115 4.115 24 C -0.149 4.149 25 C 0.051 3.949 26 O -0.410 6.410 27 C 0.076 3.924 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.348 0.652 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.285 -2.731 -25.920 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.045 4.045 4 C -0.010 4.010 5 H 0.113 0.887 6 N -0.310 5.310 7 C -0.002 4.002 8 C -0.146 4.146 9 C 0.018 3.982 10 N -0.345 5.345 11 C -0.378 4.378 12 H 0.068 0.932 13 C -0.232 4.232 14 N -0.605 5.605 15 Si 0.778 3.222 16 H -0.202 1.202 17 H -0.240 1.240 18 H -0.185 1.185 19 C -0.001 4.001 20 C -0.164 4.164 21 C -0.111 4.111 22 H 0.087 0.913 23 C -0.153 4.153 24 C -0.186 4.186 25 C -0.025 4.025 26 O -0.329 6.329 27 C -0.001 4.001 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.118 0.882 50 H 0.107 0.893 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.378 -3.067 -25.934 28.900 hybrid contribution -1.649 0.761 1.277 2.220 sum -14.027 -2.306 -24.657 28.461 Atomic orbital electron populations 1.22864 0.80018 1.03517 1.00447 1.87851 1.20812 1.27843 1.95447 1.23266 0.95206 0.85134 1.00902 1.21700 0.90805 0.98497 0.89968 0.88727 1.60504 1.54925 1.12632 1.02891 1.21230 0.96511 0.92939 0.89504 1.21858 0.96755 0.97900 0.98119 1.21127 0.99117 0.93992 0.83995 1.44485 1.19389 1.60790 1.09786 1.18884 0.89193 1.44122 0.85577 0.93236 1.25922 1.01513 1.00385 0.95362 1.69981 1.37549 1.52575 1.00419 0.85867 0.81825 0.78449 0.76042 1.20200 1.24007 1.18457 1.21332 0.87700 0.93323 0.97754 1.22048 1.01457 0.98086 0.94811 1.21473 0.95928 0.99907 0.93745 0.91268 1.21665 1.01300 0.99107 0.93236 1.22128 0.96134 1.00969 0.99417 1.22758 0.94932 0.98952 0.85890 1.87921 1.79382 1.50570 1.15050 1.22509 0.93738 0.95652 0.88167 0.88836 0.94107 0.93046 0.93782 0.91285 0.83199 0.93720 0.93232 0.90335 0.94708 0.92793 0.92988 0.94951 0.93451 0.90755 0.92637 0.91133 0.90940 0.89129 0.91973 0.92674 0.88214 0.89341 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.56 9.19 -148.98 -1.37 -8.93 16 3 C 0.03 0.56 5.08 71.98 0.37 0.93 16 4 C 0.10 1.91 1.81 44.92 0.08 1.99 16 5 H 0.09 1.73 7.10 -2.39 -0.02 1.71 16 6 N -0.68 -16.11 5.36 -469.33 -2.52 -18.63 16 7 C 0.11 3.01 2.25 44.95 0.10 3.11 16 8 C -0.11 -3.30 5.57 30.67 0.17 -3.13 16 9 C 0.14 5.44 6.52 86.36 0.56 6.00 16 10 N -0.62 -29.35 2.77 -699.10 -1.94 -31.29 16 11 C -0.25 -14.35 10.03 84.03 0.84 -13.51 16 12 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 13 C -0.04 -2.22 5.23 84.86 0.44 -1.78 16 14 N -0.96 -61.39 13.97 21.65 0.30 -61.09 16 15 Si 0.95 47.05 24.35 68.60 1.67 48.72 16 16 H -0.28 -12.89 6.62 99.48 0.66 -12.23 16 17 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 18 H -0.26 -12.23 6.63 99.48 0.66 -11.57 16 19 C 0.12 5.25 4.20 86.36 0.36 5.61 16 20 C -0.12 -4.18 5.36 30.67 0.16 -4.02 16 21 C -0.09 -1.73 1.96 -10.70 -0.02 -1.75 16 22 H 0.07 1.60 7.57 -2.39 -0.02 1.58 16 23 C -0.12 -1.66 4.86 30.71 0.15 -1.51 16 24 C -0.15 -2.04 6.14 30.68 0.19 -1.85 16 25 C 0.05 0.83 6.84 72.01 0.49 1.33 16 26 O -0.41 -9.77 10.77 -148.98 -1.60 -11.38 16 27 C 0.08 1.69 5.94 72.01 0.43 2.12 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.81 7.37 -2.38 -0.02 0.79 16 32 H 0.07 0.95 6.79 -2.39 -0.02 0.93 16 33 H 0.35 8.52 7.54 -89.69 -0.68 7.84 16 34 H 0.04 1.20 7.10 -2.39 -0.02 1.18 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.99 7.41 -2.39 -0.02 1.97 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 2.12 7.93 -2.38 -0.02 2.11 16 39 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.03 1.31 7.08 -2.38 -0.02 1.29 16 41 H 0.05 2.24 4.50 -2.39 -0.01 2.23 16 42 H 0.07 2.14 8.10 -2.38 -0.02 2.12 16 43 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 0.97 6.74 -2.39 -0.02 0.95 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 50 H 0.09 2.32 7.70 -2.39 -0.02 2.30 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.31 376.55 0.25 -68.06 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.12 Total: 19.37 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.58 Total: -4.84 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.15 Total: -111.00 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -2.97 Total: -20.31 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.67 Total: 48.72 kcal Total: -68.31 0.25 -68.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883187607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.484 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds