Wall clock time and date at job start Tue Mar 31 2020 11:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47307 * 322.71186 * 3 2 1 5 5 C 1.36928 * 120.00344 * 270.00060 * 4 3 2 6 6 H 1.08004 * 120.00123 * 188.92253 * 5 4 3 7 7 C 1.38816 * 120.00091 * 8.92475 * 5 4 3 8 8 N 1.31620 * 119.99925 * 25.61900 * 7 5 4 9 9 Si 1.86801 * 120.00153 * 205.61945 * 7 5 4 10 10 H 1.48499 * 109.46943 * 89.99675 * 9 7 5 11 11 H 1.48500 * 109.47130 * 209.99962 * 9 7 5 12 12 H 1.48498 * 109.46812 * 330.00183 * 9 7 5 13 13 C 1.46505 * 119.99325 * 90.00375 * 4 3 2 14 14 C 1.50700 * 109.47031 * 90.40028 * 13 4 3 15 15 C 1.33392 * 125.19864 * 89.72078 * 14 13 4 16 16 C 1.38470 * 114.91114 * 179.79392 * 15 14 13 17 17 Br 1.89103 * 122.54820 * 180.20722 * 16 15 14 18 18 C 1.33435 * 114.90411 * 0.48994 * 16 15 14 19 19 C 1.50704 * 125.20186 * 179.73397 * 18 16 15 20 20 S 1.75877 * 109.59559 * 359.73796 * 18 16 15 21 21 H 4.40639 * 5.51447 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.46497 * 202.71312 * 3 2 1 23 23 H 1.09000 * 109.47028 * 82.72063 * 3 2 1 24 24 H 0.96998 * 120.00220 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.46442 * 210.39084 * 13 4 3 26 26 H 1.08994 * 109.47423 * 330.39198 * 13 4 3 27 27 H 1.07992 * 122.54420 * 359.96788 * 15 14 13 28 28 H 1.08997 * 109.47039 * 180.02562 * 19 18 16 29 29 H 1.09001 * 109.47196 * 300.03100 * 19 18 16 30 30 H 1.09004 * 109.46325 * 60.02934 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0980 0.8368 5 6 3.3630 -0.8931 2.1713 6 1 3.8569 -1.6538 2.7577 7 6 2.9595 0.2923 2.7704 8 7 1.9611 0.9812 2.2597 9 14 3.8335 0.9097 4.3016 10 1 4.9661 1.7849 3.9061 11 1 2.8801 1.6816 5.1385 12 1 4.3492 -0.2468 5.0774 13 6 3.3797 -2.4159 0.2455 14 6 4.8058 -2.4937 -0.2352 15 6 5.8420 -2.9084 0.4955 16 6 7.0606 -2.8979 -0.1619 17 35 8.6688 -3.4475 0.6674 18 6 7.0149 -2.4649 -1.4232 19 6 8.2006 -2.3529 -2.3468 20 16 5.3595 -2.0448 -1.8431 21 1 -1.0498 -0.0002 0.0004 22 1 3.0088 0.9489 0.3968 23 1 3.0094 -0.1294 -1.0194 24 1 1.6793 1.8097 2.6781 25 1 3.2063 -3.1881 0.9951 26 1 2.7038 -2.5679 -0.5959 27 1 5.7378 -3.2305 1.5210 28 1 7.8731 -1.9713 -3.3138 29 1 8.9335 -1.6706 -1.9161 30 1 8.6526 -3.3361 -2.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:44 Heat of formation + Delta-G solvation = 114.501884 kcal Electronic energy + Delta-G solvation = -15632.112436 eV Core-core repulsion = 12989.006994 eV Total energy + Delta-G solvation = -2643.105442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 312.983 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.97949 -36.13522 -32.72165 -31.54708 -30.79974 -30.50045 -27.68061 -26.08207 -24.44761 -22.57706 -21.15123 -18.41224 -17.52609 -16.84350 -16.13912 -15.18102 -14.90056 -14.11739 -13.71287 -13.58390 -13.40540 -12.97777 -12.53373 -12.30286 -12.06814 -11.69612 -11.44289 -11.29068 -10.91478 -10.75475 -10.50844 -10.44082 -10.28921 -10.04265 -9.95739 -8.99352 -8.88383 -8.44565 -8.14256 -8.06585 -7.20759 -5.86201 -3.22005 1.19390 1.40706 2.10709 2.56890 2.86181 3.36598 3.44836 3.45462 4.15356 4.36904 4.51496 4.92747 5.19129 5.26278 5.52804 5.56664 5.60346 5.76066 5.81134 5.92243 6.00398 6.24955 6.40969 6.57575 6.61480 6.73015 7.21226 7.37587 7.70118 8.14383 9.01870 9.17491 9.67969 10.10063 11.16628 Molecular weight = 312.98amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.005291 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.909550 B = 5290.668109 C = 6522.877894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.093 4.093 3 C 0.267 3.733 4 N -0.576 5.576 5 C -0.267 4.267 6 H 0.079 0.921 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.895 3.105 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.279 1.279 13 C 0.209 3.791 14 C -0.146 4.146 15 C -0.127 4.127 16 C -0.093 4.093 17 Br -0.049 7.049 18 C -0.175 4.175 19 C -0.080 4.080 20 S 0.117 5.883 21 H 0.190 0.810 22 H 0.098 0.902 23 H 0.036 0.964 24 H 0.256 0.744 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.143 0.857 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 -7.985 -8.597 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.096 4.096 3 C 0.142 3.858 4 N -0.294 5.294 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.191 4.191 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.079 3.921 14 C -0.268 4.268 15 C -0.157 4.157 16 C -0.185 4.185 17 Br 0.035 6.965 18 C -0.295 4.295 19 C -0.138 4.138 20 S 0.379 5.621 21 H 0.208 0.792 22 H 0.116 0.884 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.131 -7.462 -9.472 16.410 hybrid contribution 0.465 0.136 2.190 2.243 sum 11.596 -7.325 -7.282 15.529 Atomic orbital electron populations 1.24168 0.95316 1.04914 1.07470 1.24128 0.95120 0.96210 0.94143 1.17872 0.83023 0.93657 0.91283 1.44109 1.73916 1.05178 1.06227 1.19193 1.33425 1.02220 0.84708 0.90279 1.24783 0.96944 0.98969 0.98449 1.70181 1.23536 1.17058 1.41912 0.86392 0.79525 0.79035 0.82581 1.21349 1.21919 1.20418 1.19369 0.86252 0.89489 0.96963 1.26162 1.03124 1.02655 0.94846 1.19750 0.89551 1.05090 1.01307 1.20569 0.93007 1.09847 0.95101 1.96580 1.29163 1.89772 1.80988 1.24322 0.99801 1.07504 0.97860 1.20341 0.93558 1.02893 0.97040 1.84197 0.98091 1.65097 1.14682 0.79235 0.88426 0.94592 0.93385 0.90736 0.92730 0.83920 0.91359 0.90496 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.77 19.25 29.55 0.57 -6.20 16 2 C -0.09 -2.24 11.46 -37.12 -0.43 -2.67 16 3 C 0.27 6.21 5.46 -6.83 -0.04 6.17 16 4 N -0.58 -13.50 2.47 -177.95 -0.44 -13.94 16 5 C -0.27 -6.95 9.69 -15.06 -0.15 -7.10 16 6 H 0.08 2.03 7.95 -52.48 -0.42 1.61 16 7 C 0.01 0.21 4.87 -17.43 -0.08 0.12 16 8 N -0.88 -24.64 9.20 55.49 0.51 -24.13 16 9 Si 0.90 21.40 29.62 -169.99 -5.04 16.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.21 4.04 6.16 -5.19 -0.03 4.01 16 14 C -0.15 -2.57 6.09 -36.00 -0.22 -2.79 16 15 C -0.13 -2.19 9.91 -41.19 -0.41 -2.60 16 16 C -0.09 -1.45 6.17 -41.18 -0.25 -1.70 16 17 Br -0.05 -0.66 33.24 -68.01 -2.26 -2.92 16 18 C -0.17 -2.51 6.51 -35.99 -0.23 -2.75 16 19 C -0.08 -0.88 9.70 36.01 0.35 -0.53 16 20 S 0.12 1.76 23.31 -107.50 -2.51 -0.74 16 21 H 0.19 3.59 7.80 -54.10 -0.42 3.17 16 22 H 0.10 2.51 6.35 -51.93 -0.33 2.18 16 23 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 26 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -28.34 301.51 -9.36 -37.70 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.25 Total: -0.86 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.92 Total: -16.02 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.07 Total: -38.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.04 Total: 16.37 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.74 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.26 Total: -2.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.34 -9.36 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.202 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds