Wall clock time and date at job start Tue Mar 31 2020 11:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47307 * 322.71186 * 3 2 1 5 5 C 1.36928 * 120.00344 * 270.00060 * 4 3 2 6 6 H 1.08004 * 120.00123 * 188.92253 * 5 4 3 7 7 C 1.38816 * 120.00091 * 8.92475 * 5 4 3 8 8 N 1.31620 * 119.99925 * 25.61900 * 7 5 4 9 9 Si 1.86801 * 120.00153 * 205.61945 * 7 5 4 10 10 H 1.48499 * 109.46943 * 89.99675 * 9 7 5 11 11 H 1.48500 * 109.47130 * 209.99962 * 9 7 5 12 12 H 1.48498 * 109.46812 * 330.00183 * 9 7 5 13 13 C 1.46505 * 119.99325 * 90.00375 * 4 3 2 14 14 C 1.50700 * 109.47031 * 90.40028 * 13 4 3 15 15 C 1.33392 * 125.19864 * 89.72078 * 14 13 4 16 16 C 1.38470 * 114.91114 * 179.79392 * 15 14 13 17 17 Br 1.89103 * 122.54820 * 180.20722 * 16 15 14 18 18 C 1.33435 * 114.90411 * 0.48994 * 16 15 14 19 19 C 1.50704 * 125.20186 * 179.73397 * 18 16 15 20 20 S 1.75877 * 109.59559 * 359.73796 * 18 16 15 21 21 H 4.40639 * 5.51447 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.46497 * 202.71312 * 3 2 1 23 23 H 1.09000 * 109.47028 * 82.72063 * 3 2 1 24 24 H 0.96998 * 120.00220 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.46442 * 210.39084 * 13 4 3 26 26 H 1.08994 * 109.47423 * 330.39198 * 13 4 3 27 27 H 1.07992 * 122.54420 * 359.96788 * 15 14 13 28 28 H 1.08997 * 109.47039 * 180.02562 * 19 18 16 29 29 H 1.09001 * 109.47196 * 300.03100 * 19 18 16 30 30 H 1.09004 * 109.46325 * 60.02934 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0980 0.8368 5 6 3.3630 -0.8931 2.1713 6 1 3.8569 -1.6538 2.7577 7 6 2.9595 0.2923 2.7704 8 7 1.9611 0.9812 2.2597 9 14 3.8335 0.9097 4.3016 10 1 4.9661 1.7849 3.9061 11 1 2.8801 1.6816 5.1385 12 1 4.3492 -0.2468 5.0774 13 6 3.3797 -2.4159 0.2455 14 6 4.8058 -2.4937 -0.2352 15 6 5.8420 -2.9084 0.4955 16 6 7.0606 -2.8979 -0.1619 17 35 8.6688 -3.4475 0.6674 18 6 7.0149 -2.4649 -1.4232 19 6 8.2006 -2.3529 -2.3468 20 16 5.3595 -2.0448 -1.8431 21 1 -1.0498 -0.0002 0.0004 22 1 3.0088 0.9489 0.3968 23 1 3.0094 -0.1294 -1.0194 24 1 1.6793 1.8097 2.6781 25 1 3.2063 -3.1881 0.9951 26 1 2.7038 -2.5679 -0.5959 27 1 5.7378 -3.2305 1.5210 28 1 7.8731 -1.9713 -3.3138 29 1 8.9335 -1.6706 -1.9161 30 1 8.6526 -3.3361 -2.4783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164113.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:43 Heat of formation + Delta-G solvation = 101.591252 kcal Electronic energy + Delta-G solvation = -15632.672283 eV Core-core repulsion = 12989.006994 eV Total energy + Delta-G solvation = -2643.665289 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 312.983 amu Computer time = -0.70 seconds Orbital eigenvalues (eV) -39.28664 -37.82407 -34.18862 -33.42222 -32.32736 -31.62338 -29.14969 -27.96425 -25.81163 -24.03379 -22.71965 -19.77827 -19.25901 -18.33188 -17.71419 -17.02547 -16.19483 -15.65753 -15.47701 -15.00744 -14.89901 -14.16954 -13.84988 -13.71034 -13.42899 -13.27983 -13.00227 -12.77811 -12.68645 -12.26374 -12.19743 -11.95905 -11.74535 -11.56838 -11.16072 -10.82809 -10.75085 -10.30164 -9.43342 -9.26891 -9.07233 -7.86457 -5.22020 -0.03772 0.24137 0.83385 1.37438 1.44760 1.49359 1.53979 1.57739 2.35085 2.52650 2.60465 3.23938 3.83592 3.84556 4.06631 4.14434 4.34946 4.42296 4.71336 4.73411 4.80367 4.91127 4.98304 5.09183 5.29290 5.34704 5.40251 5.61001 5.69456 6.20938 7.05954 7.37239 7.77758 8.17539 9.14456 Molecular weight = 312.98amu Principal moments of inertia in cm(-1) A = 0.016926 B = 0.005291 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.909550 B = 5290.668109 C = 6522.877894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.131 4.131 3 C 0.273 3.727 4 N -0.590 5.590 5 C -0.264 4.264 6 H 0.077 0.923 7 C -0.040 4.040 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.273 1.273 13 C 0.213 3.787 14 C -0.175 4.175 15 C -0.127 4.127 16 C -0.119 4.119 17 Br -0.031 7.031 18 C -0.159 4.159 19 C -0.082 4.082 20 S 0.144 5.856 21 H 0.222 0.778 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.247 0.753 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.568 -8.618 -9.700 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.134 4.134 3 C 0.147 3.853 4 N -0.309 5.309 5 C -0.393 4.393 6 H 0.095 0.905 7 C -0.236 4.236 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.217 1.217 11 H -0.227 1.227 12 H -0.198 1.198 13 C 0.084 3.916 14 C -0.296 4.296 15 C -0.158 4.158 16 C -0.210 4.210 17 Br 0.053 6.947 18 C -0.280 4.280 19 C -0.141 4.141 20 S 0.407 5.593 21 H 0.239 0.761 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.381 -8.131 -10.592 18.210 hybrid contribution 0.147 0.231 2.445 2.460 sum 12.529 -7.900 -8.147 16.904 Atomic orbital electron populations 1.24989 0.96342 1.03553 1.06210 1.24547 0.95998 0.97501 0.95357 1.17722 0.82996 0.92420 0.92115 1.44230 1.74474 1.06597 1.05595 1.19402 1.31970 1.01932 0.86021 0.90527 1.25338 0.97773 0.99585 1.00911 1.70317 1.24842 1.17090 1.43080 0.85550 0.78170 0.78358 0.80145 1.21725 1.22663 1.19790 1.19357 0.87653 0.87525 0.97030 1.25683 1.02075 1.04896 0.96950 1.19827 0.90408 1.04546 1.01003 1.20628 0.93326 1.11301 0.95793 1.96581 1.27588 1.89667 1.80879 1.24831 1.00376 1.04953 0.97839 1.20522 0.92287 1.04175 0.97092 1.84027 0.98467 1.64440 1.12413 0.76143 0.91407 0.92257 0.94287 0.91197 0.91720 0.84873 0.89548 0.89671 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.93 19.25 74.32 1.43 -11.50 16 2 C -0.13 -6.30 11.46 31.12 0.36 -5.95 16 3 C 0.27 12.78 5.46 84.57 0.46 13.24 16 4 N -0.59 -27.75 2.47 -716.91 -1.77 -29.53 16 5 C -0.26 -13.85 9.69 84.04 0.81 -13.03 16 6 H 0.08 3.96 7.95 -2.91 -0.02 3.94 16 7 C -0.04 -2.15 4.87 84.86 0.41 -1.74 16 8 N -0.91 -51.46 9.20 21.65 0.20 -51.26 16 9 Si 0.95 44.59 29.62 68.60 2.03 46.63 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.21 8.18 6.16 85.63 0.53 8.70 16 14 C -0.18 -6.02 6.09 24.59 0.15 -5.87 16 15 C -0.13 -4.29 9.91 21.23 0.21 -4.08 16 16 C -0.12 -3.51 6.17 21.24 0.13 -3.38 16 17 Br -0.03 -0.78 33.24 -20.37 -0.68 -1.45 16 18 C -0.16 -4.19 6.51 24.60 0.16 -4.03 16 19 C -0.08 -1.52 9.70 71.24 0.69 -0.83 16 20 S 0.14 4.06 23.31 -56.49 -1.32 2.74 16 21 H 0.22 7.90 7.80 -4.43 -0.03 7.86 16 22 H 0.07 3.58 6.35 -2.38 -0.02 3.56 16 23 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 24 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 26 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 27 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -59.85 301.51 4.95 -54.90 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.14 Total: 6.43 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 5.35 Total: -28.47 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.57 Total: -80.78 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.32 Total: 2.74 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.68 Total: -1.45 kcal Total: -59.85 4.95 -54.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164113.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.495 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.70 seconds