Wall clock time and date at job start Tue Mar 31 2020 11:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38308 * 120.34726 * 2 1 4 4 C 1.40090 * 118.29251 * 180.24173 * 3 2 1 5 5 C 1.47668 * 120.55582 * 179.79807 * 4 3 2 6 6 O 1.21474 * 120.00033 * 359.72470 * 5 4 3 7 7 O 1.34716 * 120.00379 * 179.71929 * 5 4 3 8 8 C 1.45196 * 117.00219 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47467 * 30.00438 * 8 7 5 10 10 C 1.52997 * 109.47487 * 270.00152 * 8 7 5 11 11 C 1.50706 * 109.47355 * 150.00109 * 8 7 5 12 12 H 1.08000 * 119.99302 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00436 * 179.72750 * 11 8 7 14 14 N 1.31515 * 119.99684 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00405 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47154 * 89.99418 * 15 13 11 17 17 H 1.48493 * 109.47010 * 209.99942 * 15 13 11 18 18 H 1.48502 * 109.46736 * 329.99638 * 15 13 11 19 19 C 1.39621 * 118.89030 * 359.52572 * 4 3 2 20 20 N 1.31652 * 120.57177 * 0.25057 * 19 4 3 21 21 C 1.32050 * 121.86568 * 0.02562 * 20 19 4 22 22 Br 1.89104 * 119.46051 * 179.97438 * 21 20 19 23 23 H 1.09007 * 109.47299 * 270.21639 * 1 2 3 24 24 H 1.09005 * 109.46952 * 30.21043 * 1 2 3 25 25 H 1.08993 * 109.47556 * 150.21574 * 1 2 3 26 26 H 1.07999 * 120.85595 * 0.04199 * 3 2 1 27 27 H 1.08995 * 109.47505 * 180.02562 * 10 8 7 28 28 H 1.08996 * 109.47350 * 300.00243 * 10 8 7 29 29 H 1.09002 * 109.46917 * 59.99791 * 10 8 7 30 30 H 0.97004 * 120.00247 * 180.02562 * 14 13 11 31 31 H 1.08007 * 119.71506 * 180.27296 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1936 0.0000 4 6 3.6058 1.1433 -0.0052 5 6 4.4016 2.3872 -0.0099 6 8 3.8427 3.4658 -0.0144 7 8 5.7473 2.3260 -0.0092 8 6 6.4647 3.5883 -0.0135 9 1 5.8703 4.3458 0.4975 10 6 6.7172 4.0267 -1.4574 11 6 7.7825 3.4197 0.6981 12 1 8.0538 2.4597 1.1116 13 6 8.6443 4.4894 0.8156 14 7 8.3166 5.6569 0.3064 15 14 10.2780 4.2803 1.6969 16 1 11.3181 3.8685 0.7203 17 1 10.6702 5.5676 2.3246 18 1 10.1443 3.2383 2.7465 19 6 4.2361 -0.1025 0.0000 20 7 3.5270 -1.2117 0.0046 21 6 2.2066 -1.1950 0.0041 22 35 1.2557 -2.8296 0.0102 23 1 -0.3634 0.0039 1.0277 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3634 -0.8918 -0.5104 26 1 1.6855 2.1400 0.0007 27 1 7.2561 4.9741 -1.4606 28 1 7.3116 3.2693 -1.9683 29 1 5.7641 4.1486 -1.9720 30 1 8.9231 6.4095 0.3887 31 1 5.3148 -0.1567 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122622536.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:31 Heat of formation + Delta-G solvation = -57.885968 kcal Electronic energy + Delta-G solvation = -17566.643638 eV Core-core repulsion = 14473.310026 eV Total energy + Delta-G solvation = -3093.333611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.010 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71709 -39.22486 -35.90301 -34.15745 -33.37694 -32.94460 -30.62351 -29.54821 -27.52041 -25.40732 -24.67571 -23.04599 -21.57065 -19.82880 -17.67371 -17.26001 -16.69327 -16.15137 -15.60854 -15.37181 -14.63689 -14.59072 -13.97079 -13.40600 -13.12181 -13.08387 -12.88206 -12.36360 -12.21445 -12.02400 -11.36282 -11.18746 -11.11175 -10.89888 -10.60326 -10.46405 -10.34863 -10.17504 -9.95711 -9.70609 -9.61711 -9.06442 -8.99651 -8.55313 -6.24256 -4.31779 0.26719 0.92003 1.05798 2.76079 3.22091 3.23862 3.29173 3.38587 3.63736 4.20495 4.28248 4.43263 4.62837 4.70110 5.01667 5.09200 5.16976 5.30374 5.47073 5.70755 5.79158 5.96375 6.21518 6.53875 6.80899 6.81559 7.00970 7.41427 7.50380 7.63620 7.82147 8.04740 8.44171 8.77612 9.33967 10.83108 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.003072 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.384102 B = 9113.771138 C = 9700.684935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C -0.014 4.014 4 C -0.143 4.143 5 C 0.501 3.499 6 O -0.509 6.509 7 O -0.347 6.347 8 C 0.216 3.784 9 H 0.049 0.951 10 C -0.156 4.156 11 C -0.523 4.523 12 H 0.070 0.930 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.913 3.087 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.160 3.840 20 N -0.464 5.464 21 C 0.137 3.863 22 Br -0.005 7.005 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.267 0.733 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 -14.604 -1.344 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.121 4.121 3 C -0.040 4.040 4 C -0.147 4.147 5 C 0.343 3.657 6 O -0.399 6.399 7 O -0.263 6.263 8 C 0.165 3.835 9 H 0.067 0.933 10 C -0.214 4.214 11 C -0.561 4.561 12 H 0.089 0.911 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.740 3.260 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.196 1.196 19 C 0.001 3.999 20 N -0.173 5.173 21 C -0.079 4.079 22 Br 0.079 6.921 23 H 0.101 0.899 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.176 0.824 27 H 0.120 0.880 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.099 -15.496 -1.359 22.387 hybrid contribution 0.763 1.284 0.372 1.539 sum -15.337 -14.212 -0.987 20.933 Atomic orbital electron populations 1.20938 0.88756 1.04227 1.03657 1.20603 0.98302 0.91579 1.01639 1.21675 0.92264 0.98762 0.91325 1.20619 0.94078 0.94244 1.05768 1.20618 0.83477 0.87731 0.73846 1.90789 1.72810 1.30307 1.46034 1.86538 1.16389 1.42033 1.81363 1.20747 0.90370 0.77473 0.94959 0.93325 1.22187 0.98907 1.03946 0.96367 1.21012 1.00739 0.97741 1.36612 0.91134 1.24882 0.98826 0.94676 0.95507 1.69890 1.37137 1.01102 1.44506 0.86248 0.82401 0.77706 0.79662 1.20289 1.20943 1.19554 1.23374 1.01288 0.85383 0.89900 1.67543 1.05722 1.31676 1.12363 1.22967 0.92165 0.91654 1.01131 1.96743 1.71088 1.27130 1.97104 0.89920 0.90313 0.90114 0.82405 0.88004 0.94255 0.96466 0.92303 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.56 36.01 0.34 -0.59 16 2 C -0.12 -1.34 5.89 -104.51 -0.62 -1.96 16 3 C -0.01 -0.18 9.39 -38.86 -0.37 -0.55 16 4 C -0.14 -2.29 5.89 -104.84 -0.62 -2.90 16 5 C 0.50 10.16 7.88 34.58 0.27 10.43 16 6 O -0.51 -11.47 15.68 -19.25 -0.30 -11.78 16 7 O -0.35 -7.89 9.14 -40.53 -0.37 -8.26 16 8 C 0.22 5.64 2.57 -27.88 -0.07 5.56 16 9 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 10 C -0.16 -3.86 9.32 37.16 0.35 -3.51 16 11 C -0.52 -14.28 8.90 -34.44 -0.31 -14.59 16 12 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 13 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -24.72 11.30 55.43 0.63 -24.10 16 15 Si 0.91 20.69 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 C 0.16 2.39 10.79 -17.11 -0.18 2.21 16 20 N -0.46 -6.74 10.30 -11.27 -0.12 -6.86 16 21 C 0.14 1.75 7.16 -17.37 -0.12 1.62 16 22 Br -0.01 -0.05 31.93 -68.01 -2.17 -2.22 16 23 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 24 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.08 0.58 6.64 -51.93 -0.34 0.24 16 26 H 0.16 1.90 7.73 -52.49 -0.41 1.50 16 27 H 0.10 2.69 6.05 -51.93 -0.31 2.38 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.19 2.62 7.62 -52.48 -0.40 2.22 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -29.57 295.72 -7.39 -36.95 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.07 Total: -1.20 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.42 Total: -2.67 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.51 Total: -30.95 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.67 Total: -20.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.17 Total: -2.22 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.57 -7.39 -36.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122622536.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.931 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds