Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86799 * 120.00044 * 2 1 4 4 H 1.48497 * 109.46928 * 239.99862 * 3 2 1 5 5 H 1.48493 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46989 * 120.00198 * 3 2 1 7 7 C 1.39867 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00069 * 197.63840 * 7 2 1 9 9 C 1.41195 * 120.00140 * 17.63493 * 7 2 1 10 10 C 1.40789 * 120.56630 * 203.65872 * 9 7 2 11 11 N 1.31468 * 120.39068 * 180.02562 * 10 9 7 12 12 C 1.32740 * 121.73923 * 359.97438 * 11 10 9 13 13 N 1.38415 * 119.43771 * 179.97438 * 12 11 10 14 14 C 1.46499 * 119.99707 * 0.02562 * 13 12 11 15 15 H 1.08998 * 110.63394 * 14.29771 * 14 13 12 16 16 S 1.82476 * 110.70891 * 251.18453 * 14 13 12 17 17 C 1.77283 * 94.26240 * 241.44786 * 16 14 13 18 18 O 1.21566 * 126.16254 * 179.97438 * 17 16 14 19 19 N 1.33469 * 107.67032 * 359.97438 * 17 16 14 20 20 C 1.32241 * 121.26746 * 0.02562 * 19 17 16 21 21 O 1.21230 * 123.10902 * 180.02562 * 20 19 17 22 22 C 1.39784 * 121.12671 * 0.25879 * 12 11 10 23 23 Cl 1.73604 * 120.26478 * 179.72351 * 22 12 11 24 24 C 1.36671 * 119.47358 * 359.48088 * 22 12 11 25 25 H 0.97002 * 119.99856 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.80781 * 0.04318 * 10 9 7 27 27 H 0.96998 * 119.99915 * 179.97438 * 13 12 11 28 28 H 0.97007 * 119.36509 * 180.02562 * 19 17 16 29 29 H 1.08004 * 120.79848 * 180.26663 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0083 -1.2113 -0.0005 8 1 3.0502 -1.2335 0.2828 9 6 1.3521 -2.4052 -0.3715 10 6 1.8307 -3.6528 0.0719 11 7 1.2173 -4.7623 -0.2760 12 6 0.1374 -4.7506 -1.0478 13 7 -0.4704 -5.9475 -1.3854 14 6 0.0784 -7.2127 -0.8911 15 1 0.7911 -7.0338 -0.0861 16 16 0.8590 -8.1511 -2.2474 17 6 -0.2366 -9.5367 -2.0967 18 8 -0.2140 -10.5461 -2.7738 19 7 -1.0908 -9.2718 -1.1059 20 6 -1.0277 -8.1367 -0.4303 21 8 -1.7855 -7.8620 0.4752 22 6 -0.3930 -3.5507 -1.5303 23 17 -1.8023 -3.5620 -2.5441 24 6 0.2037 -2.3682 -1.1936 25 1 -0.4850 0.8401 -0.0004 26 1 2.7068 -3.6986 0.7018 27 1 -1.2602 -5.9484 -1.9485 28 1 -1.7710 -9.9245 -0.8770 29 1 -0.1906 -1.4283 -1.5508 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155843816.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = -43.310827 kcal Electronic energy + Delta-G solvation = -20405.033363 eV Core-core repulsion = 16865.971991 eV Total energy + Delta-G solvation = -3539.061372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 313.007 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.60795 -40.68755 -40.08049 -37.39520 -37.18094 -36.78455 -35.36776 -32.46364 -31.61519 -29.16646 -26.61966 -26.05745 -24.19784 -23.19675 -22.45116 -19.80788 -19.46243 -19.32137 -18.91835 -18.12519 -17.44043 -17.09255 -16.77964 -16.52241 -16.08877 -15.84107 -15.62743 -15.12338 -14.84495 -14.59719 -14.00218 -13.65805 -13.30765 -13.14834 -12.89589 -12.74891 -12.52737 -12.44550 -12.05155 -11.89547 -11.69651 -11.43239 -11.21426 -10.71628 -10.30482 -10.07591 -9.79812 -8.87230 -8.61005 -6.27425 -0.40643 -0.21748 0.22682 0.62963 0.92410 1.18414 1.33834 1.44893 1.48261 1.55496 1.59795 2.19201 2.23481 2.52506 2.71427 3.59558 3.82892 3.95293 4.40530 4.55394 4.71296 4.96762 5.06622 5.12478 5.23748 5.54361 5.67017 5.71705 6.02084 6.21030 6.34122 6.41446 6.72161 6.78654 7.50903 8.26511 Molecular weight = 313.01amu Principal moments of inertia in cm(-1) A = 0.026106 B = 0.003638 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.291046 B = 7693.728778 C = 8044.104504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.469 4.469 8 H 0.094 0.906 9 C 0.024 3.976 10 C 0.010 3.990 11 N -0.493 5.493 12 C 0.263 3.737 13 N -0.677 5.677 14 C 0.176 3.824 15 H 0.176 0.824 16 S -0.159 6.159 17 C 0.561 3.439 18 O -0.460 6.460 19 N -0.661 5.661 20 C 0.537 3.463 21 O -0.469 6.469 22 C -0.090 4.090 23 Cl -0.083 7.083 24 C -0.111 4.111 25 H 0.292 0.708 26 H 0.157 0.843 27 H 0.414 0.586 28 H 0.432 0.568 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 -8.919 -2.236 9.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.499 4.499 8 H 0.112 0.888 9 C 0.019 3.981 10 C -0.150 4.150 11 N -0.207 5.207 12 C 0.030 3.970 13 N -0.319 5.319 14 C -0.047 4.047 15 H 0.193 0.807 16 S 0.064 5.936 17 C 0.240 3.760 18 O -0.334 6.334 19 N -0.331 5.331 20 C 0.317 3.683 21 O -0.338 6.338 22 C -0.122 4.122 23 Cl -0.055 7.055 24 C -0.138 4.138 25 H 0.102 0.898 26 H 0.174 0.826 27 H 0.253 0.747 28 H 0.276 0.724 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.305 -9.645 -2.608 9.996 hybrid contribution -1.826 1.060 0.255 2.127 sum -2.130 -8.585 -2.352 9.153 Atomic orbital electron populations 1.69832 1.09002 1.31144 1.34472 1.26756 0.95428 1.04653 0.91226 0.85220 0.78714 0.75536 0.80206 1.18473 1.19817 1.18129 1.19695 0.98774 0.91355 1.40060 0.88845 1.18643 0.92713 0.94871 0.91907 1.22600 1.02355 0.86517 1.03501 1.66591 1.07643 1.32590 1.13882 1.17297 0.94548 0.83946 1.01194 1.43448 1.32648 0.99529 1.56261 1.23427 0.96651 0.87054 0.97572 0.80707 1.88642 1.42075 1.15036 1.47856 1.21767 0.83284 0.90563 0.80357 1.90936 1.69040 1.28174 1.45218 1.44145 1.34532 1.21280 1.33129 1.20184 0.84890 0.81740 0.81441 1.90888 1.41476 1.74570 1.26894 1.20884 0.93725 0.94510 1.03081 1.98262 1.40632 1.98638 1.67956 1.21259 0.98169 0.95832 0.98554 0.89755 0.82612 0.74723 0.72433 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.68 10.92 21.82 0.24 -38.45 15 2 C 0.04 1.60 5.17 85.23 0.44 2.04 15 3 Si 0.98 34.18 29.59 68.60 2.03 36.21 15 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 5 H -0.27 -9.25 7.11 99.48 0.71 -8.55 15 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 7 C -0.47 -21.89 9.06 23.39 0.21 -21.68 15 8 H 0.09 4.07 7.90 -2.91 -0.02 4.05 15 9 C 0.02 1.15 5.59 -21.18 -0.12 1.03 15 10 C 0.01 0.44 10.97 85.37 0.94 1.37 15 11 N -0.49 -20.11 8.88 -191.09 -1.70 -21.81 15 12 C 0.26 10.36 7.48 133.32 1.00 11.36 15 13 N -0.68 -21.54 5.18 -336.61 -1.74 -23.28 15 14 C 0.18 4.73 3.99 85.83 0.34 5.07 15 15 H 0.18 4.95 7.01 -2.39 -0.02 4.93 15 16 S -0.16 -3.93 23.14 -56.49 -1.31 -5.24 15 17 C 0.56 12.44 8.91 129.99 1.16 13.60 15 18 O -0.46 -12.07 18.04 -3.92 -0.07 -12.14 15 19 N -0.66 -12.35 5.05 -439.48 -2.22 -14.57 15 20 C 0.54 12.81 7.85 88.24 0.69 13.50 15 21 O -0.47 -13.83 18.02 -2.87 -0.05 -13.88 15 22 C -0.09 -3.75 6.32 22.28 0.14 -3.61 15 23 Cl -0.08 -2.94 27.56 -2.72 -0.07 -3.01 15 24 C -0.11 -5.21 8.53 22.65 0.19 -5.02 15 25 H 0.29 12.60 8.30 -92.71 -0.77 11.83 15 26 H 0.16 6.01 8.06 -2.91 -0.02 5.99 15 27 H 0.41 12.23 7.41 -92.71 -0.69 11.54 15 28 H 0.43 5.93 8.88 -92.70 -0.82 5.10 15 29 H 0.13 6.31 6.19 -2.91 -0.02 6.29 15 Total: -1.00 -53.35 295.32 -0.14 -53.49 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.24 Total: 25.02 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 4.99 Total: 17.67 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -5.42 Total: -98.12 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.12 Total: -26.02 kcal Atomic # 14 Polarization: 34.18 SS G_CDS: 2.03 Total: 36.21 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.31 Total: -5.24 kcal Atomic # 17 Polarization: -2.94 SS G_CDS: -0.07 Total: -3.01 kcal Total: -53.35 -0.14 -53.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155843816.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -53.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds