Wall clock time and date at job start Tue Mar 31 2020 10:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47478 * 2 1 4 4 C 1.52994 * 109.47112 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.46793 * 185.18226 * 4 3 2 6 6 C 1.46895 * 111.00190 * 68.60019 * 5 4 3 7 7 C 1.50707 * 109.47449 * 66.04614 * 6 5 4 8 8 H 1.07998 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00233 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00052 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99895 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47232 * 90.00194 * 11 9 7 13 13 H 1.48504 * 109.47226 * 210.00283 * 11 9 7 14 14 H 1.48499 * 109.47160 * 329.99945 * 11 9 7 15 15 C 1.47222 * 111.00061 * 304.64025 * 5 4 3 16 16 C 1.52837 * 109.23454 * 307.00426 * 15 5 4 17 17 C 1.52672 * 110.39806 * 180.92781 * 16 15 5 18 18 C 1.53337 * 109.51834 * 284.65708 * 17 16 15 19 19 C 1.54507 * 107.51321 * 168.49868 * 17 16 15 20 20 N 1.44785 * 113.00443 * 49.18135 * 17 16 15 21 21 O 1.46311 * 112.18253 * 184.28901 * 20 17 16 22 22 C 1.44798 * 120.28715 * 319.54392 * 20 17 16 23 23 C 1.54489 * 108.20263 * 159.49765 * 22 20 17 24 24 C 1.53332 * 111.18192 * 276.97991 * 22 20 17 25 25 C 1.52669 * 112.94392 * 40.57945 * 22 20 17 26 26 H 1.09000 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47145 * 299.99979 * 1 2 3 28 28 H 1.08995 * 109.46972 * 59.99585 * 1 2 3 29 29 H 1.09005 * 109.47145 * 240.00021 * 2 1 3 30 30 H 1.09004 * 109.47523 * 120.00357 * 2 1 3 31 31 H 1.08999 * 109.46507 * 59.99955 * 3 2 1 32 32 H 1.08992 * 109.46885 * 299.99986 * 3 2 1 33 33 H 1.09000 * 109.47671 * 65.18033 * 4 3 2 34 34 H 1.09007 * 109.47550 * 305.17879 * 4 3 2 35 35 H 1.09002 * 109.47103 * 186.04395 * 6 5 4 36 36 H 1.09004 * 109.47250 * 306.04442 * 6 5 4 37 37 H 0.97000 * 119.99565 * 179.97438 * 10 9 7 38 38 H 1.08703 * 108.94734 * 67.72300 * 15 5 4 39 39 H 1.09245 * 109.36713 * 60.47588 * 16 15 5 40 40 H 1.09237 * 109.38055 * 301.40766 * 16 15 5 41 41 H 1.08999 * 109.47152 * 303.63825 * 18 17 16 42 42 H 1.09008 * 109.47015 * 183.64099 * 18 17 16 43 43 H 1.08998 * 109.47219 * 63.64209 * 18 17 16 44 44 H 1.09007 * 109.46268 * 177.67695 * 19 17 16 45 45 H 1.08997 * 109.47194 * 297.67618 * 19 17 16 46 46 H 1.09001 * 109.47403 * 57.68147 * 19 17 16 47 47 H 0.96697 * 113.99793 * 180.02562 * 21 20 17 48 48 H 1.08997 * 109.47630 * 60.00536 * 23 22 20 49 49 H 1.09007 * 109.46942 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.47217 * 299.99458 * 23 22 20 51 51 H 1.08993 * 109.47541 * 59.99832 * 24 22 20 52 52 H 1.09005 * 109.46755 * 179.97438 * 24 22 20 53 53 H 1.08996 * 109.47078 * 299.99284 * 24 22 20 54 54 H 1.09234 * 109.44341 * 70.99267 * 25 22 20 55 55 H 1.09238 * 109.43846 * 190.15654 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8218 0.1245 6 6 3.7640 3.3667 1.4562 7 6 4.5523 2.6108 2.4947 8 1 5.2071 1.8058 2.1954 9 6 4.4367 2.9462 3.8270 10 7 5.1242 2.2863 4.7333 11 14 3.3036 4.3381 4.3448 12 1 1.9483 3.7969 4.6196 13 1 3.8381 4.9811 5.5720 14 1 3.2235 5.3430 3.2543 15 6 3.4986 3.6788 -0.9329 16 6 3.7631 3.0370 -2.2945 17 6 3.2113 3.9168 -3.4137 18 6 1.6845 3.7846 -3.4636 19 6 3.7613 3.3691 -4.7496 20 7 3.6125 5.3027 -3.2939 21 8 2.9937 6.1473 -4.3159 22 6 3.6399 5.9456 -1.9967 23 6 4.5636 7.1804 -2.0894 24 6 2.2475 6.4494 -1.5986 25 6 4.1896 5.0416 -0.8960 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 3.9330 1.0112 -0.9336 34 1 3.9337 0.8502 0.8391 35 1 4.0398 4.4208 1.4869 36 1 2.6987 3.2637 1.6626 37 1 5.0431 2.5226 5.6706 38 1 2.4301 3.7903 -0.7669 39 1 3.2824 2.0567 -2.3325 40 1 4.8391 2.9071 -2.4312 41 1 1.4144 2.7360 -3.5885 42 1 1.2971 4.3620 -4.3032 43 1 1.2565 4.1620 -2.5349 44 1 3.3529 3.9507 -5.5762 45 1 4.8486 3.4457 -4.7537 46 1 3.4702 2.3247 -4.8616 47 1 3.2444 7.0796 -4.2603 48 1 4.1759 7.8687 -2.8403 49 1 4.5996 7.6807 -1.1216 50 1 5.5675 6.8629 -2.3713 51 1 1.5554 5.6085 -1.5555 52 1 2.3000 6.9268 -0.6200 53 1 1.8974 7.1708 -2.3368 54 1 5.2642 4.9072 -1.0387 55 1 4.0190 5.5084 0.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170003098.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:40 Heat of formation + Delta-G solvation = -26.546443 kcal Electronic energy + Delta-G solvation = -29703.267791 eV Core-core repulsion = 26161.895819 eV Total energy + Delta-G solvation = -3541.371972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 312.252 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.35950 -38.86902 -36.24971 -35.78736 -35.17963 -34.36577 -31.54866 -30.46946 -29.23671 -28.61722 -27.88544 -27.58705 -27.23150 -24.61560 -23.43828 -22.40693 -21.71590 -20.51523 -19.32818 -18.91216 -17.89301 -17.00021 -16.85759 -16.32260 -16.15757 -15.86279 -15.39292 -15.11341 -14.96576 -14.78598 -14.68151 -14.30664 -14.25582 -13.92479 -13.88315 -13.83075 -13.48640 -13.21991 -13.18325 -13.07202 -12.79666 -12.75128 -12.66111 -12.49879 -12.44044 -12.34485 -12.24740 -12.12071 -11.95700 -11.90799 -11.73338 -11.63025 -11.60788 -11.49060 -11.33113 -11.14482 -10.99045 -10.75829 -9.01212 -8.89557 -8.27442 -6.28237 1.29860 1.31396 1.41364 1.74441 2.32147 3.03653 3.10048 3.57745 3.67978 3.85717 3.86892 3.96187 4.00223 4.05131 4.19064 4.26736 4.34493 4.37621 4.38730 4.41102 4.50402 4.59658 4.68421 4.72356 4.73642 4.79512 4.81252 4.85368 4.88376 4.90166 4.92394 4.95649 4.99043 5.05007 5.05925 5.08322 5.13450 5.15866 5.19315 5.21990 5.29960 5.32880 5.39196 5.42424 5.46723 5.50617 5.57396 5.62394 6.03881 6.26252 6.43494 6.69834 6.77958 6.86774 7.34346 8.89293 Molecular weight = 312.25amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.005472 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.646917 B = 5115.517947 C = 6519.531585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.145 4.145 4 C 0.064 3.936 5 N -0.533 5.533 6 C 0.173 3.827 7 C -0.505 4.505 8 H 0.039 0.961 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.935 3.065 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.250 1.250 15 C 0.086 3.914 16 C -0.095 4.095 17 C 0.141 3.859 18 C -0.165 4.165 19 C -0.127 4.127 20 N -0.386 5.386 21 O -0.413 6.413 22 C 0.111 3.889 23 C -0.139 4.139 24 C -0.172 4.172 25 C -0.100 4.100 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.028 0.972 36 H -0.017 1.017 37 H 0.265 0.735 38 H 0.033 0.967 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.385 0.615 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.044 0.956 52 H 0.058 0.942 53 H 0.072 0.928 54 H 0.069 0.931 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 6.079 -19.069 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.184 4.184 4 C -0.064 4.064 5 N -0.255 5.255 6 C 0.046 3.954 7 C -0.543 4.543 8 H 0.058 0.942 9 C -0.186 4.186 10 N -0.588 5.588 11 Si 0.759 3.241 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.173 1.173 15 C -0.023 4.023 16 C -0.133 4.133 17 C 0.052 3.948 18 C -0.224 4.224 19 C -0.185 4.185 20 N -0.151 5.151 21 O -0.310 6.310 22 C 0.021 3.979 23 C -0.196 4.196 24 C -0.231 4.231 25 C -0.138 4.138 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.000 1.000 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.232 0.768 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.077 0.923 53 H 0.091 0.909 54 H 0.087 0.913 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.345 5.462 -19.195 21.266 hybrid contribution -1.663 0.955 1.730 2.583 sum -9.008 6.417 -17.465 20.672 Atomic orbital electron populations 1.21738 0.95080 1.02117 1.01466 1.21427 0.96483 0.95655 1.01996 1.22145 0.97362 0.98079 1.00818 1.22100 0.92678 0.90229 1.01430 1.62232 1.58593 1.02209 1.02498 1.19925 0.93121 0.95353 0.87005 1.21239 1.24917 1.17239 0.90934 0.94243 1.25721 0.97274 0.98933 0.96633 1.70042 1.43851 1.43230 1.01725 0.85892 0.79230 0.80434 0.78504 1.19741 1.20670 1.17344 1.21520 0.95700 0.93199 0.91858 1.21743 1.02320 0.98239 0.91005 1.20660 0.93830 0.83837 0.96476 1.22477 0.96168 1.02444 1.01330 1.22108 1.01094 1.00314 0.94970 1.62629 1.53451 0.97308 1.01714 1.89492 1.72833 1.24000 1.44645 1.21102 0.95322 0.94780 0.86738 1.22248 0.99352 0.95486 1.02543 1.22585 0.97036 1.01330 1.02140 1.21660 1.00843 0.94206 0.97084 0.91529 0.94079 0.92028 0.90485 0.93460 0.94503 0.91274 0.89904 0.93111 0.95372 0.99962 0.92606 0.94959 0.89568 0.90948 0.91320 0.92101 0.93925 0.92333 0.92502 0.91271 0.76833 0.90591 0.91736 0.91986 0.93713 0.92301 0.90884 0.91251 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.12 -3.19 5.93 30.59 0.18 -3.01 16 3 C -0.15 -4.64 4.27 30.59 0.13 -4.51 16 4 C 0.06 2.32 4.63 86.30 0.40 2.72 16 5 N -0.53 -21.21 4.55 -875.73 -3.99 -25.20 16 6 C 0.17 8.17 3.52 85.56 0.30 8.47 16 7 C -0.50 -28.94 8.95 25.60 0.23 -28.71 16 8 H 0.04 2.53 7.41 -2.91 -0.02 2.51 16 9 C 0.01 0.67 5.47 84.65 0.46 1.13 16 10 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 11 Si 0.94 44.29 27.47 68.60 1.88 46.18 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 15 C 0.09 2.72 1.14 44.75 0.05 2.77 16 16 C -0.09 -2.51 3.31 30.43 0.10 -2.41 16 17 C 0.14 3.28 0.74 4.44 0.00 3.29 16 18 C -0.17 -3.69 7.97 72.10 0.57 -3.12 16 19 C -0.13 -2.60 8.32 72.49 0.60 -2.00 16 20 N -0.39 -8.90 4.05 -430.57 -1.74 -10.65 16 21 O -0.41 -8.43 12.02 -50.19 -0.60 -9.03 16 22 C 0.11 2.62 0.72 4.43 0.00 2.62 16 23 C -0.14 -2.67 8.25 72.49 0.60 -2.07 16 24 C -0.17 -3.95 7.96 72.09 0.57 -3.37 16 25 C -0.10 -3.04 3.85 30.43 0.12 -2.93 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 1.39 6.33 -2.39 -0.02 1.37 16 32 H 0.07 1.97 6.12 -2.39 -0.01 1.96 16 33 H 0.08 2.60 6.49 -2.39 -0.02 2.58 16 34 H 0.05 2.24 6.67 -2.38 -0.02 2.22 16 35 H 0.03 1.34 5.06 -2.39 -0.01 1.33 16 36 H -0.02 -0.82 5.67 -2.38 -0.01 -0.83 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.03 1.08 5.07 -2.54 -0.01 1.07 16 39 H 0.09 2.13 5.63 -2.26 -0.01 2.11 16 40 H 0.07 2.04 8.07 -2.26 -0.02 2.02 16 41 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.06 1.37 7.54 -2.38 -0.02 1.35 16 43 H 0.04 1.05 4.98 -2.39 -0.01 1.04 16 44 H 0.06 1.21 7.76 -2.38 -0.02 1.19 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.39 5.32 7.12 -74.06 -0.53 4.79 16 48 H 0.08 1.06 6.55 -2.39 -0.02 1.04 16 49 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 51 H 0.04 1.15 4.99 -2.39 -0.01 1.13 16 52 H 0.06 1.37 8.06 -2.38 -0.02 1.36 16 53 H 0.07 1.41 7.55 -2.39 -0.02 1.39 16 54 H 0.07 2.26 8.07 -2.26 -0.02 2.24 16 55 H 0.06 2.06 6.18 -2.26 -0.01 2.04 16 Total: -1.00 -65.52 388.73 1.17 -64.36 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.28 Total: 27.13 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 5.04 Total: -33.80 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -5.43 Total: -94.83 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.60 Total: -9.03 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -65.52 1.17 -64.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170003098.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.810 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds