Wall clock time and date at job start Tue Mar 31 2020 11:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99960 * 2 1 4 4 H 1.48500 * 109.46863 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46901 * 299.99543 * 3 2 1 6 6 H 1.48494 * 109.46995 * 60.00119 * 3 2 1 7 7 C 1.38817 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00096 * 0.02562 * 7 2 1 10 10 S 1.65595 * 120.00016 * 185.06509 * 9 7 2 11 11 O 1.42106 * 106.40077 * 310.80157 * 10 9 7 12 12 O 1.42106 * 106.40155 * 177.88335 * 10 9 7 13 13 C 1.76194 * 107.21936 * 64.34057 * 10 9 7 14 14 C 1.38224 * 119.99823 * 244.48471 * 13 10 9 15 15 C 1.38299 * 120.02665 * 179.97438 * 14 13 10 16 16 Cl 1.73600 * 119.99298 * 180.02562 * 15 14 13 17 17 C 1.38490 * 120.01301 * 0.02562 * 15 14 13 18 18 Cl 1.73606 * 120.00359 * 179.97438 * 17 15 14 19 19 C 1.38273 * 119.98958 * 359.69587 * 17 15 14 20 20 C 1.38446 * 119.99411 * 64.46318 * 13 10 9 21 21 F 1.35105 * 120.00217 * 0.02562 * 20 13 10 22 22 H 0.97000 * 120.00080 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99875 * 5.06822 * 9 7 2 24 24 H 1.08000 * 119.98339 * 0.02562 * 14 13 10 25 25 H 1.08001 * 120.01669 * 180.30397 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3882 0.0005 10 16 2.1486 -3.8194 0.1278 11 8 3.1973 -3.7657 -0.8297 12 8 1.1668 -4.8465 0.1483 13 6 2.9212 -3.8378 1.7112 14 6 4.3001 -3.8429 1.8074 15 6 4.9071 -3.8568 3.0500 16 17 6.6390 -3.8625 3.1697 17 6 4.1336 -3.8662 4.1987 18 17 4.8959 -3.8844 5.7584 19 6 2.7542 -3.8554 4.1033 20 6 2.1470 -3.8468 2.8590 21 9 0.7993 -3.8419 2.7648 22 1 -0.4850 0.8400 -0.0004 23 1 0.3585 -2.3898 -0.0740 24 1 4.9036 -3.8351 0.9118 25 1 2.1507 -3.8578 4.9989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201277996.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:01 Heat of formation + Delta-G solvation = -123.462388 kcal Electronic energy + Delta-G solvation = -19459.002874 eV Core-core repulsion = 15758.279964 eV Total energy + Delta-G solvation = -3700.722911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 312.953 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39591 -40.46955 -38.02481 -37.84794 -37.67913 -36.70245 -36.57995 -32.95612 -32.58505 -31.56744 -26.51802 -24.96628 -24.29529 -20.54271 -20.13530 -19.50580 -18.68322 -18.36030 -17.98843 -17.04578 -16.88232 -16.53068 -16.09602 -15.61657 -15.40445 -15.13078 -15.07884 -14.49620 -13.85774 -13.39098 -13.19029 -13.12154 -13.04147 -13.01059 -12.86440 -12.56861 -12.50508 -12.34377 -12.25018 -12.08485 -11.82558 -11.75060 -10.54856 -10.26492 -9.97171 -8.43712 -5.93556 -0.86039 -0.40673 -0.36549 0.45134 0.81930 1.50539 1.52118 1.63416 1.72705 2.22660 2.56827 2.74266 2.85763 3.14425 3.17433 3.58227 3.71161 4.02732 4.08196 4.32025 4.40327 4.52895 5.06180 5.13118 5.51083 6.66000 6.83002 7.22685 8.72855 Molecular weight = 312.95amu Principal moments of inertia in cm(-1) A = 0.014169 B = 0.005891 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.734749 B = 4752.271610 C = 5231.226159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.008 4.008 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.295 4.295 8 H 0.115 0.885 9 N -0.949 5.949 10 S 2.620 3.380 11 O -0.980 6.980 12 O -1.010 7.010 13 C -0.697 4.697 14 C 0.016 3.984 15 C -0.067 4.067 16 Cl -0.025 7.025 17 C 0.035 3.965 18 Cl -0.010 7.010 19 C -0.147 4.147 20 C 0.198 3.802 21 F -0.120 7.120 22 H 0.279 0.721 23 H 0.409 0.591 24 H 0.173 0.827 25 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.124 -4.066 10.508 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.214 4.214 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.435 4.435 8 H 0.132 0.868 9 N -0.700 5.700 10 S 2.712 3.288 11 O -0.971 6.971 12 O -0.999 6.999 13 C -0.779 4.779 14 C -0.004 4.004 15 C -0.095 4.095 16 Cl 0.005 6.995 17 C 0.007 3.993 18 Cl 0.019 6.981 19 C -0.167 4.167 20 C 0.177 3.823 21 F -0.098 7.098 22 H 0.089 0.911 23 H 0.244 0.756 24 H 0.190 0.810 25 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.456 -4.807 10.119 14.659 hybrid contribution -0.340 0.928 0.678 1.198 sum 9.116 -3.879 10.796 14.653 Atomic orbital electron populations 1.69795 1.07427 1.29455 1.47766 1.26151 0.96364 1.02632 0.96222 0.85008 0.79162 0.77183 0.78062 1.17711 1.20211 1.20059 1.19763 0.92888 0.83306 1.47575 0.86767 1.51690 1.18074 1.20300 1.79980 1.06251 0.72834 0.73584 0.76156 1.93449 1.57675 1.87330 1.58597 1.93432 1.60089 1.58369 1.88022 1.31881 1.04820 1.16764 1.24467 1.20819 0.91651 0.89986 0.97940 1.20868 0.87127 1.08307 0.93228 1.98390 1.06057 1.96743 1.98347 1.20668 0.92104 0.98924 0.87590 1.98415 1.80710 1.96005 1.22939 1.21211 0.93256 1.04407 0.97818 1.17074 0.76941 0.94842 0.93435 1.91617 1.28624 1.92657 1.96941 0.91133 0.75595 0.80969 0.79388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.34 13.06 21.65 0.28 -46.06 15 2 C -0.01 -0.39 5.50 84.86 0.47 0.08 15 3 Si 0.98 37.98 29.55 68.60 2.03 40.01 15 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 5 H -0.28 -10.61 7.11 99.48 0.71 -9.90 15 6 H -0.28 -10.41 7.11 99.48 0.71 -9.70 15 7 C -0.29 -14.28 9.64 84.03 0.81 -13.47 15 8 H 0.11 5.21 7.80 -2.91 -0.02 5.19 15 9 N -0.95 -44.96 5.74 -54.26 -0.31 -45.28 15 10 S 2.62 113.95 5.34 -56.49 -0.30 113.64 15 11 O -0.98 -44.95 16.67 -128.00 -2.13 -47.09 15 12 O -1.01 -47.70 17.46 -128.00 -2.23 -49.94 15 13 C -0.70 -25.69 5.82 22.32 0.13 -25.56 15 14 C 0.02 0.50 9.33 22.28 0.21 0.71 15 15 C -0.07 -1.83 6.32 22.34 0.14 -1.69 15 16 Cl -0.02 -0.57 27.96 -2.72 -0.08 -0.65 15 17 C 0.04 0.90 6.32 22.34 0.14 1.04 15 18 Cl -0.01 -0.21 27.96 -2.72 -0.08 -0.29 15 19 C -0.15 -3.93 9.81 22.33 0.22 -3.72 15 20 C 0.20 6.82 7.21 22.37 0.16 6.98 15 21 F -0.12 -4.53 16.30 44.97 0.73 -3.79 15 22 H 0.28 13.40 8.31 -92.71 -0.77 12.63 15 23 H 0.41 20.06 8.04 -96.75 -0.78 19.28 15 24 H 0.17 5.17 7.33 -2.91 -0.02 5.15 15 25 H 0.19 3.77 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -57.91 280.85 0.69 -57.22 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.50 Total: 17.84 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 2.28 Total: -35.62 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -0.03 Total: -91.33 kcal Atomic # 8 Polarization: -92.66 SS G_CDS: -4.37 Total: -97.02 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.73 Total: -3.79 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 113.95 SS G_CDS: -0.30 Total: 113.64 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.15 Total: -0.93 kcal Total: -57.91 0.69 -57.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201277996.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.244 kcal (2) G-P(sol) polarization free energy of solvation -57.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds