Wall clock time and date at job start Tue Mar 31 2020 10:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47365 * 2 1 4 4 C 1.42896 * 113.99891 * 174.84625 * 3 2 1 5 5 H 1.08997 * 109.47718 * 4.30469 * 4 3 2 6 6 C 1.50704 * 109.46883 * 124.30164 * 4 3 2 7 7 O 1.21285 * 119.99915 * 4.99521 * 6 4 3 8 8 N 1.34776 * 120.00157 * 184.99806 * 6 4 3 9 9 C 1.46927 * 120.62873 * 359.72458 * 8 6 4 10 10 C 1.53617 * 108.54527 * 126.36844 * 9 8 6 11 11 C 1.53036 * 109.24573 * 54.85226 * 10 9 8 12 12 C 1.53002 * 109.45061 * 178.50052 * 11 10 9 13 13 N 1.46501 * 109.47068 * 295.06090 * 12 11 10 14 14 C 1.36935 * 120.00055 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00234 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00113 * 179.97438 * 14 13 12 17 17 N 1.31627 * 119.99644 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00241 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47226 * 89.99673 * 18 16 14 20 20 H 1.48497 * 109.46954 * 209.99877 * 18 16 14 21 21 H 1.48504 * 109.46694 * 329.99898 * 18 16 14 22 22 C 1.53046 * 109.53727 * 298.51225 * 11 10 9 23 23 C 1.46918 * 120.63013 * 179.97438 * 8 6 4 24 24 C 1.52997 * 109.47382 * 244.29579 * 4 3 2 25 25 C 1.53001 * 109.47271 * 305.53360 * 24 4 3 26 26 C 1.53004 * 109.46811 * 65.52978 * 24 4 3 27 27 H 1.08996 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47320 * 300.00005 * 1 2 3 29 29 H 1.08999 * 109.47148 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.47320 * 239.99994 * 2 1 3 31 31 H 1.08999 * 109.47148 * 119.99974 * 2 1 3 32 32 H 1.09004 * 109.58044 * 246.19632 * 9 8 6 33 33 H 1.08999 * 109.58632 * 6.61633 * 9 8 6 34 34 H 1.09006 * 109.63199 * 294.85885 * 10 9 8 35 35 H 1.09000 * 109.43627 * 174.72483 * 10 9 8 36 36 H 1.08998 * 109.46429 * 58.53406 * 11 10 9 37 37 H 1.08997 * 109.47260 * 55.05823 * 12 11 10 38 38 H 1.09001 * 109.47101 * 175.06183 * 12 11 10 39 39 H 0.97000 * 120.00133 * 359.97438 * 13 12 11 40 40 H 0.97003 * 119.99607 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.49931 * 301.41141 * 22 11 10 42 42 H 1.08994 * 109.49588 * 181.31688 * 22 11 10 43 43 H 1.09002 * 109.59178 * 353.37715 * 23 8 6 44 44 H 1.09004 * 109.58871 * 113.66191 * 23 8 6 45 45 H 1.09003 * 109.47650 * 185.53056 * 24 4 3 46 46 H 1.08994 * 109.47334 * 59.99807 * 25 24 4 47 47 H 1.09004 * 109.46746 * 179.97438 * 25 24 4 48 48 H 1.08999 * 109.46733 * 299.99636 * 25 24 4 49 49 H 1.08999 * 109.46861 * 66.08551 * 26 24 4 50 50 H 1.08996 * 109.47066 * 186.08453 * 26 24 4 51 51 H 1.08993 * 109.47112 * 306.08612 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4259 1.4618 0.1173 5 1 3.8727 0.4677 0.1077 6 6 3.9624 2.2647 -1.0398 7 8 3.1972 2.7727 -1.8319 8 7 5.2924 2.4182 -1.1944 9 6 6.2316 1.8138 -0.2398 10 6 7.2440 0.9636 -1.0222 11 6 7.9087 1.8302 -2.0942 12 6 8.9450 0.9978 -2.8519 13 7 10.0241 0.6126 -1.9389 14 6 11.0718 -0.1410 -2.3964 15 1 11.1029 -0.4512 -3.4304 16 6 12.0945 -0.5055 -1.5314 17 7 12.0573 -0.1262 -0.2716 18 14 13.5242 -1.5330 -2.1558 19 1 14.5990 -0.6362 -2.6515 20 1 14.0507 -2.3723 -1.0496 21 1 13.0592 -2.4073 -3.2625 22 6 6.8471 2.3368 -3.0734 23 6 5.8304 3.1975 -2.3176 24 6 3.7741 2.1649 1.4307 25 6 3.0357 3.5029 1.5044 26 6 3.3520 1.2839 2.6083 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 6.7544 2.5995 0.3056 33 1 5.6851 1.1818 0.4602 34 1 6.7306 0.1274 -1.4970 35 1 8.0036 0.5839 -0.3388 36 1 8.4010 2.6796 -1.6209 37 1 8.4699 0.1018 -3.2512 38 1 9.3557 1.5873 -3.6715 39 1 9.9967 0.8921 -1.0104 40 1 12.7718 -0.3812 0.3330 41 1 6.3375 1.4878 -3.5289 42 1 7.3243 2.9346 -3.8499 43 1 5.0191 3.4788 -2.9891 44 1 6.3189 4.0953 -1.9387 45 1 4.8490 2.3403 1.4752 46 1 1.9608 3.3276 1.4600 47 1 3.2835 4.0035 2.4404 48 1 3.3364 4.1305 0.6655 49 1 3.9555 0.3763 2.6176 50 1 3.5001 1.8284 3.5408 51 1 2.2996 1.0194 2.5052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205241911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:43 Heat of formation + Delta-G solvation = -86.531753 kcal Electronic energy + Delta-G solvation = -27598.024097 eV Core-core repulsion = 23918.217872 eV Total energy + Delta-G solvation = -3679.806225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 312.220 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.69958 -38.58274 -37.31463 -35.40745 -34.75613 -32.81081 -31.39484 -31.14408 -30.31911 -27.83211 -27.34875 -26.23338 -23.75181 -23.33758 -22.99913 -21.90093 -20.74201 -20.23853 -19.17764 -17.36415 -17.03650 -16.94613 -16.15749 -15.78856 -15.14191 -14.82313 -14.65566 -14.54263 -14.16031 -14.07727 -13.73194 -13.59154 -13.43460 -13.00056 -12.79032 -12.69018 -12.56201 -12.44002 -12.31479 -12.27139 -12.12887 -11.83571 -11.59481 -11.37107 -11.17896 -11.14107 -11.02132 -10.89318 -10.85199 -10.43052 -10.36662 -10.30987 -10.11170 -9.98052 -9.66631 -9.31497 -8.89140 -8.61310 -6.93572 -5.79211 -3.07160 2.56143 2.73786 3.41793 3.47258 3.48570 3.56544 4.29664 4.45693 4.56719 4.57641 4.78898 4.80401 4.84797 4.92959 5.02974 5.05897 5.09395 5.11817 5.20798 5.33973 5.34382 5.37757 5.45275 5.52283 5.54057 5.62349 5.63512 5.66294 5.70562 5.79314 5.82637 5.87196 5.93526 5.96234 6.03166 6.06914 6.17202 6.19062 6.26087 6.42096 6.43573 6.61277 6.78572 6.88046 6.90667 7.37454 7.68404 8.16010 8.40341 9.51541 10.09489 10.44296 11.43792 Molecular weight = 312.22amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.002845 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.790836 B = 9839.930890 C =10214.736120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.079 3.921 5 H 0.087 0.913 6 C 0.508 3.492 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.125 4.125 11 C -0.094 4.094 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.125 4.125 23 C 0.113 3.887 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.708 3.770 4.540 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.268 6.268 4 C 0.017 3.983 5 H 0.105 0.895 6 C 0.295 3.705 7 O -0.405 6.405 8 N -0.342 5.342 9 C -0.023 4.023 10 C -0.164 4.164 11 C -0.113 4.113 12 C 0.030 3.970 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.164 4.164 23 C -0.009 4.009 24 C -0.129 4.129 25 C -0.198 4.198 26 C -0.205 4.205 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.166 4.094 3.989 21.924 hybrid contribution 1.219 -0.819 0.001 1.469 sum -19.947 3.275 3.990 20.604 Atomic orbital electron populations 1.21713 0.93492 1.02179 1.03246 1.22668 0.95933 0.83748 1.00125 1.88008 1.18556 1.26123 1.94152 1.21979 0.83666 0.99279 0.93367 0.89476 1.20745 0.81970 0.81305 0.86453 1.90679 1.56545 1.48498 1.44784 1.48142 1.05134 1.52781 1.28129 1.22154 0.91496 0.97287 0.91386 1.22020 0.97952 0.97764 0.98629 1.21304 0.95413 0.98630 0.95912 1.20670 0.88439 0.95096 0.92754 1.42373 1.22219 1.63452 1.09583 1.19233 0.98468 1.24353 0.94856 0.91283 1.24724 0.99021 1.01540 0.95746 1.69654 1.34373 1.50769 1.03551 0.86197 0.82746 0.79841 0.77462 1.21742 1.21780 1.20804 1.21904 0.96357 0.99965 0.98190 1.21605 0.97345 0.93577 0.88334 1.21652 1.01493 0.96747 0.93008 1.21701 1.01394 0.95335 1.01332 1.21845 1.01908 0.99357 0.97401 0.91107 0.91879 0.91669 0.93332 0.93092 0.90780 0.89837 0.91802 0.89269 0.90913 0.96452 0.96353 0.78282 0.93548 0.91644 0.90611 0.89297 0.91486 0.89073 0.91577 0.92631 0.92858 0.92524 0.91925 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.48 6.11 37.16 0.23 0.70 16 3 O -0.35 -4.22 8.11 -55.09 -0.45 -4.66 16 4 C 0.08 0.88 1.50 -27.88 -0.04 0.84 16 5 H 0.09 0.85 6.91 -51.93 -0.36 0.49 16 6 C 0.51 7.05 6.13 -10.98 -0.07 6.98 16 7 O -0.53 -9.27 15.92 -14.31 -0.23 -9.49 16 8 N -0.61 -7.60 2.97 -172.53 -0.51 -8.11 16 9 C 0.10 1.12 4.92 -3.49 -0.02 1.10 16 10 C -0.13 -1.76 5.26 -26.39 -0.14 -1.89 16 11 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 12 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 13 N -0.73 -17.93 5.32 -59.91 -0.32 -18.25 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 18 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.13 -1.62 5.36 -26.63 -0.14 -1.76 16 23 C 0.11 1.41 6.43 -3.73 -0.02 1.39 16 24 C -0.11 -1.03 2.29 -90.62 -0.21 -1.24 16 25 C -0.14 -1.42 8.81 37.16 0.33 -1.10 16 26 C -0.15 -1.14 9.11 37.16 0.34 -0.81 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.38 7.63 -51.93 -0.40 -0.01 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.79 4.73 -51.93 -0.25 0.55 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.42 7.15 -51.93 -0.37 1.05 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 9.70 6.84 -40.82 -0.28 9.43 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.81 5.42 -51.93 -0.28 0.53 16 46 H 0.07 0.72 7.55 -51.93 -0.39 0.33 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.05 0.63 7.40 -51.93 -0.38 0.25 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.49 7.00 -51.93 -0.36 0.12 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -32.50 391.66 -9.06 -41.56 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -9.32 Total: 5.17 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 0.17 Total: -2.35 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.67 Total: -14.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.50 -9.06 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205241911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.972 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds